Origin IGS: taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacgaaacgacaagcgaaaaaagaacctgtaaagatgtaaatatttttcacaagaatacctattgtataacattctcattatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttccttacgaattatccttacaaaaccaaagaatttctttagcatttggcataagcaataaaaagaaaaccacactactgaaactccactgtgcccacacataaaaagcctcactcggacttctccaaacgaggcttcttaataattttagaatcagaagtttta Mask Tandem Repeat Region ================================================ taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Find is-nt database================================================ Query_seq: PI0948:PI0949|PI0948:PI0949:hypothetical protein:endonuclease:->->:882039..882403 365 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0948:PI0949|PI0948:PI0949:hypothetical protein:endonuclease:->->:882039..882403 365 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0948:PI0949|PI0948:PI0949:hypothetical protein:endonuclease:->->:882039..882403 365 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 9 End: 158 ........ M I L K L L R S L V W R S P S E A F Y V W A Q W S F S S V V F F L L L M P N A K E I L W F C K D N S ............................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 52 End: 225 ................................................... M R L F M C G H S G V S V V W F S F Y C L C Q M L K K F F G F V R I I R K E N D N F D L A L R K R L F C I A K Q P L ............................................................................................................................................ Protein_Len: 38 Strand: + Start: 167 End: 280 ...................................................................................................................................................................... M I I S I W H C E S G C F A S Q N S R F D R V K P T L L Q C K T I G F A L R ..................................................................................... Protein_Len: 37 Strand: + Start: 253 End: 363 ............................................................................................................................................................................................................................................................ M Q N N R F C I A L I M R M L Y N R Y S C E K Y L H L Y R F F F R L S F R .. Protein_Len: 46 Strand: - Start: 127 End: 264 .............................................................................................................................. L F E K T K Y P Y N T L F I I I E I Q C Q S L P Q K A D C F L R K S R T F G V S K C H L V M ..................................................................................................... Protein_Len: 34 Strand: - Start: 108 End: 209 ........................................................................................................... Q K H W I S F F N K P K T L I I R L S F S L K S K A N R F R S N Q M ............................................................................................................................................................ Protein_Len: 50 Strand: - Start: 65 End: 214 ................................................................ T H A C H L K L L T T K K K N S I G F A L S I R Q N Q L S L E Y P F H Y N R N P M A F A A T K C R M ....................................................................................................................................................... taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -13.8 Tail_Score: -2.87344 Start: 25 End: 64 Full_Region: TGATTCTAAAATTAT TAAGAAGCCTCGTTTGGA GAAG TCCGAGTGAGGCTTTTTA TGTGTGGGCACAGTG ........................TAAGAAGCCTCGTTTGGAGAAGTCCGAGTGAGGCTTTTTA............................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 73 HP_score: -5.9 Tail_Score: -4.3898 Start: 124 End: 140 Full_Region: TGCTTATGCCAAATG CTAAAGA AAT TCTTTGG TTTTGTAAGGATAAT ...........................................................................................................................CTAAAGAAATTCTTTGG................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -21.9 Tail_Score: -3.59262 Start: 195 End: 223 Full_Region: TTTGGCATTGCGAAA GCGGCTGTTTTGC ATC GCAAAACAGCCGC TTTGACCGTGTAAAA ..................................................................................................................................................................................................GCGGCTGTTTTGCATCGCAAAACAGCCGC.............................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -21.9 Tail_Score: -3.57144 Start: 195 End: 223 Full_Region: ttttacacggtcaaa gcggctgttttgc gat gcaaaacagccgc tttcgcaatgccaaa ..................................................................................................................................................................................................gcggctgttttgcgatgcaaaacagccgc.............................................................................................................................................. TransTerm Strand: + Conf: 68 HP_score: -9.0 Tail_Score: -2.52635 Start: 250 End: 278 Full_Region: AAAACCTACGCTTTT ACAATGCAAAAC AATAG GTTTTGCATTGC GTTGATAATGAGAAT .........................................................................................................................................................................................................................................................ACAATGCAAAACAATAGGTTTTGCATTGC....................................................................................... TransTerm Strand: - Conf: 70 HP_score: -8.4 Tail_Score: -3.29511 Start: 254 End: 274 Full_Region: tcattatcaacgcaa tgcaaaac ctatt gttttgca ttgtaaaagcgtagg .............................................................................................................................................................................................................................................................tgcaaaacctattgttttgca........................................................................................... Find igs database================================================ Query_seq: PI0948:PI0949|PI0948:PI0949:hypothetical protein:endonuclease:->->:882039..882403 365 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Intra-Species Hit: Count: 46 Min: 1 Max: 365 Len: 365 Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 0.0 bit: 724.0 Len: 365 Query Start:1 Query End:365 Subject Strand: POSITIVE Subject Start: 1 Subject End: 365 taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta taaaacttctgattctaaaattattaagaagcctcgtttggagaagtccgagtgaggctttttatgtgtgggcacagtggagtttcagtagtgtggttttctttttattgcttatgccaaatgctaaagaaattctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatctttacaggttcttttttcgcttgtcgtttcgtta Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 190 Query Start:140 Query End:329 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 238 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...........................................................................................................................................gttttgtaaagattattcgtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttaca.................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:192 Query End:226 Subject Strand: POSITIVE Subject Start: 152 Subject End: 186 ...............................................................................................................................................................................................aaagcggctgttttgcatcgcaaaacagccgcttt........................................................................................................................................... ...............................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacagccgcttt........................................................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 122 Query Start:151 Query End:272 Subject Strand: POSITIVE Subject Start: 155 Subject End: 276 ......................................................................................................................................................ataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. ......................................................................................................................................................ataattcgtagagaaaatgacaatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg............................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 139 Query Start:134 Query End:272 Subject Strand: NEGATIVE Subject Start: 56 Subject End: 194 .....................................................................................................................................tctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. .....................................................................................................................................tctttcgttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg............................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 137 Query Start:135 Query End:271 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 310 ......................................................................................................................................ctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ......................................................................................................................................ctttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 190 Query Start:140 Query End:329 Subject Strand: POSITIVE Subject Start: 143 Subject End: 332 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...........................................................................................................................................gttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttaca.................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 8.0E-35 bit: 149.0 Len: 131 Query Start:141 Query End:271 Subject Strand: POSITIVE Subject Start: 741 Subject End: 871 ............................................................................................................................................ttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ............................................................................................................................................ttttgtaaagaaagttcgcaagaaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 165 Query Start:171 Query End:335 Subject Strand: POSITIVE Subject Start: 109 Subject End: 273 ..........................................................................................................................................................................taatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttta.............................. ..........................................................................................................................................................................taattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgatacacagattgttatttaatagtggtgcttgtgaaaaatatttacagcttta.............................. HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 35 Query Start:192 Query End:226 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 164 ...............................................................................................................................................................................................aaagcggctgttttgcatcgcaaaacagccgcttt........................................................................................................................................... ...............................................................................................................................................................................................aaagcggctcttttgcatcgcaaaacagccgcttt........................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 5.0E-33 bit: 143.0 Len: 100 Query Start:172 Query End:271 Subject Strand: POSITIVE Subject Start: 175 Subject End: 274 ...........................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ...........................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 5.0E-33 bit: 143.0 Len: 100 Query Start:172 Query End:271 Subject Strand: POSITIVE Subject Start: 213 Subject End: 312 ...........................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ...........................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................. HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:192 Query End:226 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 267 ...............................................................................................................................................................................................aaagcggctgttttgcatcgcaaaacagccgcttt........................................................................................................................................... ...............................................................................................................................................................................................aaagcggctgttttgcaatgcaaaacagccgcttt........................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 137 Query Start:135 Query End:271 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 368 ......................................................................................................................................ctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ......................................................................................................................................ctttggttttgtaaagataattcatt-gaaaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 155 Query Start:180 Query End:334 Subject Strand: POSITIVE Subject Start: 226 Subject End: 380 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttt............................... ...................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt............................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 146 Query Start:140 Query End:285 Subject Strand: POSITIVE Subject Start: 9 Subject End: 154 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgata................................................................................ ...........................................................................................................................................gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata................................................................................ Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 142 Query Start:164 Query End:305 Subject Strand: POSITIVE Subject Start: 238 Subject End: 379 ...................................................................................................................................................................aaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaatag............................................................ ...................................................................................................................................................................aaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaatacgttgatatacagattgttatacaatag............................................................ Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 189 Query Start:141 Query End:329 Subject Strand: POSITIVE Subject Start: 155 Subject End: 343 ............................................................................................................................................ttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ............................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca.................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 132 Query Start:140 Query End:271 Subject Strand: POSITIVE Subject Start: 265 Subject End: 396 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ...........................................................................................................................................gttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 144 Query Start:142 Query End:285 Subject Strand: NEGATIVE Subject Start: 373 Subject End: 516 .............................................................................................................................................tttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgata................................................................................ .............................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgata................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 143 Query Start:187 Query End:329 Subject Strand: POSITIVE Subject Start: 147 Subject End: 289 ..........................................................................................................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ..........................................................................................................................................................................................ttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca.................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 138 Query Start:135 Query End:272 Subject Strand: NEGATIVE Subject Start: 331 Subject End: 468 ......................................................................................................................................ctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. ......................................................................................................................................ctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttg............................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:133 Query End:282 Subject Strand: POSITIVE Subject Start: 193 Subject End: 341 ....................................................................................................................................ttctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttg................................................................................... ....................................................................................................................................ttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgat-gcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:192 Query End:226 Subject Strand: NEGATIVE Subject Start: 252 Subject End: 285 ...............................................................................................................................................................................................aaagcggctgttttgcatcgcaaaacagccgcttt........................................................................................................................................... ...............................................................................................................................................................................................aaagcggctgttttgcatcgc-aaacagccgcttt........................................................................................................................................... Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 149 Query Start:138 Query End:286 Subject Strand: NEGATIVE Subject Start: 71 Subject End: 219 .........................................................................................................................................tggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataa............................................................................... .........................................................................................................................................tggttttgtaaagataatttacaaggaaaacggtattttcgatttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttgtaaagcgttgataa............................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 156 Query Start:180 Query End:335 Subject Strand: POSITIVE Subject Start: 150 Subject End: 305 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttta.............................. ...................................................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagcttta.............................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 168 Query Start:163 Query End:330 Subject Strand: NEGATIVE Subject Start: 29 Subject End: 196 ..................................................................................................................................................................gaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacat................................... ..................................................................................................................................................................gaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgataacaagacgattacacaagagatactcttgtgaaaaatatttacat................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 7.0E-23 bit: 109.0 Len: 155 Query Start:137 Query End:291 Subject Strand: POSITIVE Subject Start: 84 Subject End: 238 ........................................................................................................................................ttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgaga.......................................................................... ........................................................................................................................................ttggttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgcaaagtgttgatagtgaga.......................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 150 Query Start:180 Query End:329 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 353 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...................................................................................................................................................................................tttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca.................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 143 Query Start:187 Query End:329 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 263 ..........................................................................................................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ..........................................................................................................................................................................................ttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttaca.................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 114 Query Start:170 Query End:283 Subject Strand: POSITIVE Subject Start: 120 Subject End: 233 .........................................................................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttga.................................................................................. .........................................................................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga.................................................................................. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 107 Query Start:180 Query End:286 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 438 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataa............................................................................... ...................................................................................................................................................................................tttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgataa............................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 150 Query Start:180 Query End:329 Subject Strand: POSITIVE Subject Start: 224 Subject End: 373 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttaca.................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 132 Query Start:140 Query End:271 Subject Strand: NEGATIVE Subject Start: 416 Subject End: 547 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ...........................................................................................................................................gttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggtttt.............................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 123 Query Start:164 Query End:286 Subject Strand: POSITIVE Subject Start: 136 Subject End: 258 ...................................................................................................................................................................aaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataa............................................................................... ...................................................................................................................................................................aaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgataa............................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 155 Query Start:180 Query End:334 Subject Strand: NEGATIVE Subject Start: 35 Subject End: 189 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttt............................... ...................................................................................................................................................................................tttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttacaccttt............................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 139 Query Start:134 Query End:272 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 178 .....................................................................................................................................tctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. .....................................................................................................................................tctttggttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttg............................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 109 Query Start:164 Query End:272 Subject Strand: POSITIVE Subject Start: 169 Subject End: 277 ...................................................................................................................................................................aaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. ...................................................................................................................................................................aaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 156 Query Start:180 Query End:335 Subject Strand: POSITIVE Subject Start: 518 Subject End: 673 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgata-atgagaatgttatacaataggtattcttgtgaaaaatatttacatcttta.............................. ...................................................................................................................................................................................tttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgatacataataa-gttatataacagttatacttgcgaaaaatatttacatattta.............................. Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 132 Query Start:141 Query End:272 Subject Strand: POSITIVE Subject Start: 341 Subject End: 472 ............................................................................................................................................ttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. ............................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg............................................................................................. Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 128 Query Start:144 Query End:271 Subject Strand: POSITIVE Subject Start: 72 Subject End: 199 ...............................................................................................................................................tgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.............................................................................................. ...............................................................................................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................. Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 143 Query Start:187 Query End:329 Subject Strand: POSITIVE Subject Start: 105 Subject End: 247 ..........................................................................................................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ..........................................................................................................................................................................................ttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca.................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 107 Query Start:180 Query End:286 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 188 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataa............................................................................... ...................................................................................................................................................................................tttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataa............................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 110 Query Start:180 Query End:289 Subject Strand: NEGATIVE Subject Start: 161 Subject End: 270 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatga............................................................................ ...................................................................................................................................................................................tttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggttttacaatgccttgattatga............................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 150 Query Start:180 Query End:329 Subject Strand: POSITIVE Subject Start: 153 Subject End: 302 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...................................................................................................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 93 Query Start:235 Query End:327 Subject Strand: POSITIVE Subject Start: 241 Subject End: 333 ..........................................................................................................................................................................................................................................aaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatattta...................................... ..........................................................................................................................................................................................................................................aaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgctgatgatgagattgttaggtgaaagttattgttgtgaaaaatattta...................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 56 Query Start:140 Query End:195 Subject Strand: POSITIVE Subject Start: 146 Subject End: 201 ...........................................................................................................................................gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaag.......................................................................................................................................................................... ...........................................................................................................................................gttttgtaaagataattctgaagaaaaacgataatttcgatttggcactgcgaaag.......................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 150 Query Start:180 Query End:329 Subject Strand: POSITIVE Subject Start: 348 Subject End: 497 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................... ...................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgataacaagagaattacacaataggtgtgtctgtgaaaaatatttaca.................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 9.0E-10 bit: 65.9 Len: 105 Query Start:168 Query End:272 Subject Strand: NEGATIVE Subject Start: 410 Subject End: 514 .......................................................................................................................................................................tgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg............................................................................................. .......................................................................................................................................................................tgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 105 Query Start:180 Query End:284 Subject Strand: POSITIVE Subject Start: 150 Subject End: 254 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgat................................................................................. ...................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgat................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-6 bit: 54.0 Len: 107 Query Start:180 Query End:286 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 243 ...................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataa............................................................................... ...................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataa............................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAACUUCUGAUUCUAAAAUUAUUAAGAAGCCUCGUUUGGAGAAGUCCGAGUGAGGCUUUUUAUGUGUGGGCACAGUGGAGUUUCAGUAGUGUGGUUUUCUUUUUAUUGCUUAUGCCAAAUGCUAAAGAAAUUCUUUGGUUUUGUAAGGAUAAUUCGUAAGGAAAAUGAUAAUUUCGAUUUGGCAUUGCGAAAGCGGCUGUUUUGCAUCGCAAAACAGCCGCUUUGACCGUGUAAAACCUACGCUUUUACAAUGCAAAACAAUAGGUUUUGCAUUGCGUUGAUAAUGAGAAUGUUAUACAAUAGGUAUUCUUGUGAAAAAUAUUUACAUCUUUACAGGUUCUUUUUUCGCUUGUCGUUUCGUUA ....(((.(((((((((.......((((((((((((((((((....)))))))))))))))))).(((....)))..)))))..)))).)))((.(((((((((..(((((((.(((.(((.(((((((.....)))))))))))))))).))))....))))))))).)).....(((..(((((..(((((((((((((((((((...)))))))))))))...((((.((((((((((.........(((((((((((.....))))))))))).(((((((((......))))).)))))))).....((((((.....))))))..))))))))))....)))))).)))))..)))... (-116.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACGAAACGACAAGCGAAAAAAGAACCUGUAAAGAUGUAAAUAUUUUUCACAAGAAUACCUAUUGUAUAACAUUCUCAUUAUCAACGCAAUGCAAAACCUAUUGUUUUGCAUUGUAAAAGCGUAGGUUUUACACGGUCAAAGCGGCUGUUUUGCGAUGCAAAACAGCCGCUUUCGCAAUGCCAAAUCGAAAUUAUCAUUUUCCUUACGAAUUAUCCUUACAAAACCAAAGAAUUUCUUUAGCAUUUGGCAUAAGCAAUAAAAAGAAAACCACACUACUGAAACUCCACUGUGCCCACACAUAAAAAGCCUCACUCGGACUUCUCCAAACGAGGCUUCUUAAUAAUUUUAGAAUCAGAAGUUUUA ....(((((.....(((((....((.((((((((..((((((....))).))).....((((((((.((((........))))))..((((((((((((.....))))))))))))......)))))))))))).))))..((((((((((((((...))))))))))))))))))).(((((((((.((((.......))))........................((((.....))))...))))))))).........................((((.........(((....))).(((.(((((((....(((....)))....))))))).)))............))))..))))). (-89.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 822 230 181 195 146 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 822 230 181 107 58 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 792 226 181 180 135 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 762 270 221 70 21 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 761 217 173 45 1 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 729 207 165 43 1 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 719 260 211 115 66 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 719 260 211 115 66 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 712 230 181 200 151 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 707 249 201 231 183 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 703 217 173 45 1 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 703 217 173 45 1 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 701 260 212 71 23 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 695 279 231 79 31 pint:PI2131|5end_hypothetical_protein_2080678..2080908_POSITIVE 690 217 171 229 183 pint:PI1830|5end_conserved_hypothetical_protein_1769439..1769669_POSITIVE 686 230 181 107 58 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 685 270 221 106 57 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 674 270 221 70 21 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 674 270 221 70 21 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 670 217 173 45 1 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 822 230 181 140 91 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 787 208 162 139 93 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 778 207 161 111 64 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 734 207 161 117 71 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 733 200 151 150 101 pint:PI1167|3end_hypothetical_protein_1089890..1090040_POSITIVE 709 217 171 127 81 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 690 217 171 149 103 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 682 200 151 110 61 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 656 226 181 150 105 pint:PI1528|3end_hypothetical_protein_1449878..1450028_POSITIVE 618 208 161 118 71 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 612 239 191 50 2 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 604 230 181 140 91 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 598 230 181 144 95 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 595 220 171 130 81 pint:PI2131|3end_hypothetical_protein_2080868..2081018_POSITIVE 585 239 191 109 61 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 582 230 181 140 91 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 573 230 181 140 91 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 562 270 221 53 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 562 270 221 53 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 555 230 181 150 101 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE