Origin IGS: taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatttatcacgtttctgacacccaagaaatagcaatgttggcatgagaaacgtgctcaatcacgcccttgcaatgtaacagcgatttgacataaaatcgctatggttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggttttacaatgccttgattatgaagtggttaaacaacaactatgcttatgaaaaatatttacagcattttcattttatttccgccccctgaatatgctgaaactacccaataaaaaaagcacgacaaatacgaaatgtacttgccgtgcccttatttatattatgtgtaatatagtttcttta Mask Tandem Repeat Region ================================================ taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Find is-nt database================================================ Query_seq: PI0932:PI0933|PI0932:PI0933:conserved hypothetical protein; possible hemin receptor:hypothetical protein:->->:865425..865839 415 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0932:PI0933|PI0932:PI0933:conserved hypothetical protein; possible hemin receptor:hypothetical protein:->->:865425..865839 415 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0932:PI0933|PI0932:PI0933:conserved hypothetical protein; possible hemin receptor:hypothetical protein:->->:865425..865839 415 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 214 End: 312 ..................................................................................................................................................................................................................... M H G K S G S F A L Q N L R F C N V K T Q L P L F N K I I F T K P ....................................................................................................... Protein_Len: 39 Strand: + Start: 236 End: 352 ........................................................................................................................................................................................................................................... M H C K T Y A F A M S K R N C H F L I K L S L Q N H S D F M S N R C Y I A R A ............................................................... Protein_Len: 60 Strand: - Start: 96 End: 299 ............................................................................................... Q L Y K E Y A Y N N N L W K M I L A N Y F R N N R T G F A Y T K C P L L P E K A N C F R R K Q L T L V C N G S K L L I M .................................................................................................................... Protein_Len: 43 Strand: - Start: 1 End: 129 L S V I N C M I Y I L A R C T C K T N T T S K K N P L K L M N L P R F Y F S F A T F M .............................................................................................................................................................................................................................................................................................. taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 174 End: 203 .............................................................................................................................................................................TTTGGAACGCGAAACAATAGGTTTTACAAT.................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -12.7 Tail_Score: -5.8187 Start: 35 End: 65 Full_Region: ATAATATAAATAAGG GCACGGCAAGTAC ATTTC GTATTTGTCGTGC TTTTTTTATTGGGTA ..................................GCACGGCAAGTACATTTCGTATTTGTCGTGC.............................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -19.3 Tail_Score: -4.16943 Start: 205 End: 255 Full_Region: TTTCGCGTTCCAAAA GCGTAGGTTTTGCACGGTAAAAG CGGCT CTTTTGCATTGCAAAACCTACGC TTTTGCAATGTCAAA ............................................................................................................................................................................................................GCGTAGGTTTTGCACGGTAAAAGCGGCTCTTTTGCATTGCAAAACCTACGC................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -17.1 Tail_Score: -4.07568 Start: 205 End: 255 Full_Region: tttgacattgcaaaa gcgtaggttttgcaatgcaaaag agccg cttttaccgtgcaaaacctacgc ttttggaacgcgaaa ............................................................................................................................................................................................................gcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgc................................................................................................................................................................ TransTerm Strand: + Conf: 58 HP_score: -6.1 Tail_Score: -3.17075 Start: 313 End: 336 Full_Region: ATCTTTACAAAACCA TAGCGATTT TATGTC AAATCGCTG TTACATTGCAAGGGC ........................................................................................................................................................................................................................................................................................................................TAGCGATTTTATGTCAAATCGCTG............................................................................... TransTerm Strand: - Conf: 48 HP_score: -3.9 Tail_Score: -3.17598 Start: 313 End: 336 Full_Region: gcccttgcaatgtaa cagcgattt gacata aaatcgcta tggttttgtaaagat ........................................................................................................................................................................................................................................................................................................................cagcgatttgacataaaatcgcta............................................................................... Find igs database================================================ Query_seq: PI0932:PI0933|PI0932:PI0933:conserved hypothetical protein; possible hemin receptor:hypothetical protein:->->:865425..865839 415 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Intra-Species Hit: Count: 46 Min: 1 Max: 415 Len: 415 Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 0.0 bit: 781.0 Len: 415 Query Start:1 Query End:415 Subject Strand: POSITIVE Subject Start: 1 Subject End: 415 taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgcnnnnnnnattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca taaagaaactatattacacataatataaataagggcacggcaagtacatttcgtatttgtcgtgctttttttattgggtagtttcagcatattcagggggcggaaataaaatgaaaatgctgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgattttatgtcaaatcgctgttacattgcaagggcgtgattgagcacgtttctcatgccaacattgctatttcttgggtgtcagaaacgtgataaatca Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 143 Query Start:166 Query End:308 Subject Strand: POSITIVE Subject Start: 166 Subject End: 308 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... .....................................................................................................................................................................atcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa........................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 141 Query Start:169 Query End:309 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 281 ........................................................................................................................................................................aaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ........................................................................................................................................................................aaggcattataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa.......................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 144 Query Start:166 Query End:309 Subject Strand: POSITIVE Subject Start: 334 Subject End: 477 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... .....................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.......................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 6.0E-36 bit: 153.0 Len: 145 Query Start:166 Query End:310 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 287 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... .....................................................................................................................................................................atcaagactttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaac......................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 144 Query Start:179 Query End:322 Subject Strand: NEGATIVE Subject Start: 66 Subject End: 209 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccatagcgatttt............................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaagcaaagctatttt............................................................................................. Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 135 Query Start:178 Query End:312 Subject Strand: POSITIVE Subject Start: 232 Subject End: 365 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacca....................................................................................................... .................................................................................................................................................................................taaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcgtttttcaat-gaattatctttacaaaacca....................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 132 Query Start:178 Query End:309 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 313 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa.......................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-27 bit: 123.0 Len: 134 Query Start:179 Query End:312 Subject Strand: NEGATIVE Subject Start: 198 Subject End: 330 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacca....................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaacca....................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 133 Query Start:178 Query End:310 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 275 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaac......................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 133 Query Start:178 Query End:310 Subject Strand: POSITIVE Subject Start: 190 Subject End: 322 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... .................................................................................................................................................................................taaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac......................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:121 Query End:270 Subject Strand: POSITIVE Subject Start: 358 Subject End: 507 ........................................................................................................................tgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaa................................................................................................................................................. ........................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa................................................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 131 Query Start:179 Query End:309 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 321 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..................................................................................................................................................................................aaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa.......................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 130 Query Start:178 Query End:307 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 242 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaa............................................................................................................ .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa............................................................................................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 137 Query Start:174 Query End:310 Subject Strand: POSITIVE Subject Start: 93 Subject End: 229 .............................................................................................................................................................................attgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... .............................................................................................................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac......................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 101 Query Start:179 Query End:279 Subject Strand: NEGATIVE Subject Start: 175 Subject End: 275 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattg........................................................................................................................................ ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattg........................................................................................................................................ Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 132 Query Start:179 Query End:310 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 276 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaac......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 197 Subject End: 232 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 132 Query Start:179 Query End:310 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 296 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaac......................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 135 Query Start:179 Query End:313 Subject Strand: POSITIVE Subject Start: 255 Subject End: 389 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccat...................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccat...................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: NEGATIVE Subject Start: 299 Subject End: 334 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1117_PI1118|glycosyl transferase, family 2:glycosyl transferases, group 1|POSITIVE:POSITIVE|[1042340,1042635]|296 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 105 Query Start:166 Query End:270 Subject Strand: POSITIVE Subject Start: 76 Subject End: 180 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaa................................................................................................................................................. .....................................................................................................................................................................atcaagacattgtaaaacctattgtttcgcgttccaaaagcggctgttttacacggtaaaagcgtaggttttgcatcgcaaaacaaccgcttttggaatgtcaaa................................................................................................................................................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:179 Query End:309 Subject Strand: POSITIVE Subject Start: 305 Subject End: 435 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa.......................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 122 Query Start:183 Query End:304 Subject Strand: NEGATIVE Subject Start: 507 Subject End: 628 ......................................................................................................................................................................................cctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatcttta............................................................................................................... ......................................................................................................................................................................................cctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta............................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 189 Query Start:121 Query End:309 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 279 ........................................................................................................................tgtaaatatttttcataagcatagttgttgtttaac-cacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ........................................................................................................................tgtaaatatttttcacaagcatagttgttgtctaactcgctatatt-tcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa.......................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 190 Query Start:121 Query End:310 Subject Strand: POSITIVE Subject Start: 39 Subject End: 228 ........................................................................................................................tgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... ........................................................................................................................tgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 176 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgctgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 145 Query Start:166 Query End:310 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 256 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... .....................................................................................................................................................................atcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaac......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 164 Subject End: 199 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 144 Query Start:166 Query End:309 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 254 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... .....................................................................................................................................................................atcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa.......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 162 Subject End: 197 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 132 Query Start:179 Query End:310 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 180 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaac......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 101 Subject End: 136 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 123 Query Start:187 Query End:309 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 348 ..........................................................................................................................................................................................ttgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..........................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa.......................................................................................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:202 Query End:249 Subject Strand: POSITIVE Subject Start: 277 Subject End: 324 .........................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaac...................................................................................................................................................................... .........................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaac...................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:178 Query End:308 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 330 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... .................................................................................................................................................................................taaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 250 Subject End: 285 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 278 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 199 Subject End: 234 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 189 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 110 Subject End: 145 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 129 Query Start:179 Query End:307 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 298 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaa............................................................................................................ ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa............................................................................................................ HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 219 Subject End: 254 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 140 Query Start:166 Query End:305 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 244 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttac.............................................................................................................. .....................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttac.............................................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 152 Subject End: 187 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 131 Query Start:179 Query End:309 Subject Strand: POSITIVE Subject Start: 152 Subject End: 282 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa.......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 231 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 127 Query Start:182 Query End:308 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 436 .....................................................................................................................................................................................acctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... .....................................................................................................................................................................................acctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 360 Subject End: 395 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 143 Query Start:166 Query End:308 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 622 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... .....................................................................................................................................................................atcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 530 Subject End: 565 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 131 Query Start:179 Query End:309 Subject Strand: POSITIVE Subject Start: 88 Subject End: 218 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaatcgaaattaccattttctaaagaaataatctttacaaaa.......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: NEGATIVE Subject Start: 132 Subject End: 167 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 344 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa........................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 265 Subject End: 300 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 110 Query Start:161 Query End:270 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 289 ................................................................................................................................................................tcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaa................................................................................................................................................. ................................................................................................................................................................tcattatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa................................................................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 138 Query Start:174 Query End:311 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 350 .............................................................................................................................................................................attgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacc........................................................................................................ .............................................................................................................................................................................attgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaacc........................................................................................................ Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 100 Query Start:208 Query End:307 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 262 ...............................................................................................................................................................................................................taggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaa............................................................................................................ ...............................................................................................................................................................................................................taggttttacacagtaaaagcggctgttttgcgatgcaaaatagccgcttttgcaatgccaaagcgcagttatcactttttaagagaattatctttacaa............................................................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 132 Query Start:179 Query End:310 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 244 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaac......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: POSITIVE Subject Start: 165 Subject End: 200 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt............................................................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 131 Query Start:179 Query End:309 Subject Strand: POSITIVE Subject Start: 95 Subject End: 225 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.......................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa.......................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 143 Query Start:166 Query End:308 Subject Strand: POSITIVE Subject Start: 374 Subject End: 516 .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa........................................................................................................... .....................................................................................................................................................................atcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa........................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 134 Query Start:179 Query End:312 Subject Strand: POSITIVE Subject Start: 411 Subject End: 544 ..................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacca....................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaacca....................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 134 Query Start:178 Query End:311 Subject Strand: POSITIVE Subject Start: 110 Subject End: 243 .................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacc........................................................................................................ .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc........................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:224 Query End:259 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 190 ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt............................................................................................................................................................ ...............................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgctttt............................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGAAACUAUAUUACACAUAAUAUAAAUAAGGGCACGGCAAGUACAUUUCGUAUUUGUCGUGCUUUUUUUAUUGGGUAGUUUCAGCAUAUUCAGGGGGCGGAAAUAAAAUGAAAAUGCUGUAAAUAUUUUUCAUAAGCAUAGUUGUUGUUUAACCACUUCAUAAUCAAGGCAUUGUAAAACCUAUUGUUUCGCGUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUCUUUUGCAUUGCAAAACCUACGCUUUUGCAAUGUCAAAACGCAAUUGCCACUUUUUAAUAAAAUUAUCUUUACAAAACCAUAGCGAUUUUAUGUCAAAUCGCUGUUACAUUGCAAGGGCGUGAUUGAGCACGUUUCUCAUGCCAACAUUGCUAUUUCUUGGGUGUCAGAAACGUGAUAAAUCA ....((((((((....((......(((((.(((((((((((((((((.....)))))))))))))))))))))))).)))))))).((........(((((((((((((.(((((.(((((................))))).((((.....))))...))))).....(((..........))).))))))).))))))..((((((((((((((((..(((((((.....)))))))..))))))))))))))))(((((((((......((....))...............................((((((((((......)))))))))).)))))))))..))..((((...(((((((((.(((((.................))))).)))))))))...)))). (-127.92) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUUAUCACGUUUCUGACACCCAAGAAAUAGCAAUGUUGGCAUGAGAAACGUGCUCAAUCACGCCCUUGCAAUGUAACAGCGAUUUGACAUAAAAUCGCUAUGGUUUUGUAAAGAUAAUUUUAUUAAAAAGUGGCAAUUGCGUUUUGACAUUGCAAAAGCGUAGGUUUUGCAAUGCAAAAGAGCCGCUUUUACCGUGCAAAACCUACGCUUUUGGAACGCGAAACAAUAGGUUUUACAAUGCCUUGAUUAUGAAGUGGUUAAACAACAACUAUGCUUAUGAAAAAUAUUUACAGCAUUUUCAUUUUAUUUCCGCCCCCUGAAUAUGCUGAAACUACCCAAUAAAAAAAGCACGACAAAUACGAAAUGUACUUGCCGUGCCCUUAUUUAUAUUAUGUGUAAUAUAGUUUCUUUA (((((...(((((((((.(...((((.(........).))))..).)))))))))...))))).((((((.((.......((((((((......))))))))..(((.((((((((.((((((((((....))))).))))).((((((.(.((.(((((((((((((((((((....(((((.....)))))....))))))))))))))))))).)).)))))))......)))))))).))).......))))).)))........(((((((.(((((...(((((...((((((.((((................)))).))))))...................(((((.(((.(((.....))).))).)))))........)))))...))))))))))))...... (-110.09) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 908 250 201 72 23 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 908 250 201 227 178 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 877 260 212 110 62 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 864 239 194 61 16 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 833 230 181 161 112 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 833 230 181 180 131 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 807 240 194 189 143 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 807 240 194 62 16 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 787 270 221 92 43 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 787 239 194 47 2 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 778 230 181 114 65 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 708 229 181 224 176 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 708 229 181 51 3 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 708 229 181 178 130 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 688 229 181 184 136 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 688 229 181 198 150 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 688 229 181 91 43 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 688 229 181 184 136 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 682 218 172 187 141 pint:PI0653|5end_hypothetical_protein_596046..596276_POSITIVE 679 229 181 211 163 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 908 250 201 105 56 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 881 240 194 117 71 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 830 230 181 151 102 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 824 240 194 117 71 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 746 270 221 56 7 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 708 229 181 133 85 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 708 229 181 57 9 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 704 229 181 145 97 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 699 251 212 151 112 pint:PI1761|3end_hypothetical_protein_1684543..1684693_POSITIVE 688 229 181 145 97 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 688 229 181 145 97 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 688 229 181 145 97 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 688 229 181 145 97 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 688 229 181 84 36 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 688 229 181 133 85 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 688 229 181 133 85 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 688 229 181 145 97 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 670 229 181 133 85 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 670 229 181 128 80 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 664 230 181 137 85 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE