Origin IGS: aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taattagaaacgtagaacaagtaattcttaaattacataatcaaatcctcggtgcgaaagtaccgaggattttttgttataacaaataaaaaatgagttcaataagaaaatatttgtgagttaatttcatctttcttattcaaggtaaatactggaaaacaaacatggctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgattaagaagttaagaaacagacacgcttaggaaaaatgtttacagcattaccaactttttcccgtccataaaataagttttcgcctttcagtttctactattcctaaaatgggtataaagtaaaattaacgcccattatgcaaagcatttaagaaaataatcactacttttgcattaacagataacacaaaacaaatacagaatatgaacaacttaccaacgataggaagataccatttt Mask Tandem Repeat Region ================================================ aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Find is-nt database================================================ Query_seq: PI0892:PI0893|PI0892:PI0893:acyl-ACP thioesterase:outer membrane protein 41 precursor:->->:824000..824552 553 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0892:PI0893|PI0892:PI0893:acyl-ACP thioesterase:outer membrane protein 41 precursor:->->:824000..824552 553 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0892:PI0893|PI0892:PI0893:acyl-ACP thioesterase:outer membrane protein 41 precursor:->->:824000..824552 553 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 17 End: 112 ................ M V G K L F I F C I C F V L S V N A K V V I I F L N A L H N G R ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 221 End: 415 ............................................................................................................................................................................................................................ M F L N F L I I S V L Q N L L F C V P K V A V L H G K S V G F A T Q N S R F R N V K T Q L S L F K R I I F T K P C L F S .......................................................................................................................................... Protein_Len: 47 Strand: + Start: 312 End: 452 ....................................................................................................................................................................................................................................................................................................................... M Q R K T A A F A M S K R S Y H F L R E L S L Q S H V C F P V F T L N K K D E I N S Q I F S Y ..................................................................................................... Protein_Len: 30 Strand: - Start: 263 End: 352 ...................................................................................................................................................................................................................................................................... Q K A N W F H S N Q V T F A Y T K C R L V A A K A I D F R M ......................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 214 End: 405 ..................................................................................................................................................................................................................... R L K K I M L T N C F R N N Q T G F T A T K C P L L T P K A V C F L R K R L T L V C N D S K L L I I K V F G H K N E L M .................................................................................................................................................... aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 89 HP_score: -11.2 Tail_Score: -3.59262 Start: 281 End: 331 Full_Region: TTTTGCGTTCCAAAA GTGGCTGTTTTGCACGGTAAAAGC GTA GGTTTTGCAACGCAAAACAGCCGC TTTCGCAATGTCAAA ........................................................................................................................................................................................................................................................................................GTGGCTGTTTTGCACGGTAAAAGCGTAGGTTTTGCAACGCAAAACAGCCGC.............................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -11.2 Tail_Score: -4.07568 Start: 281 End: 331 Full_Region: tttgacattgcgaaa gcggctgttttgcgttgcaaaacc tac gcttttaccgtgcaaaacagccac ttttggaacgcaaaa ........................................................................................................................................................................................................................................................................................gcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccac.............................................................................................................................................................................................................................. TransTerm Strand: + Conf: 93 HP_score: -11.0 Tail_Score: -4.05848 Start: 485 End: 508 Full_Region: TGTTATAACAAAAAA TCCTCGGTAC TTTC GCACCGAGGA TTTGATTATGTAATT ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGGTACTTTCGCACCGAGGA............................................. TransTerm Strand: - Conf: 100 HP_score: -13.2 Tail_Score: -5.55769 Start: 485 End: 508 Full_Region: aattacataatcaaa tcctcggtgc gaaa gtaccgagga ttttttgttataaca ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcctcggtgcgaaagtaccgagga............................................. Find igs database================================================ Query_seq: PI0892:PI0893|PI0892:PI0893:acyl-ACP thioesterase:outer membrane protein 41 precursor:->->:824000..824552 553 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Intra-Species Hit: Count: 49 Min: 1 Max: 553 Len: 553 Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 0.0 bit: 1096.0 Len: 553 Query Start:1 Query End:553 Subject Strand: POSITIVE Subject Start: 1 Subject End: 553 aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta aaaatggtatcttcctatcgttggtaagttgttcatattctgtatttgttttgtgttatctgttaatgcaaaagtagtgattattttcttaaatgctttgcataatgggcgttaattttactttatacccattttaggaatagtagaaactgaaaggcgaaaacttattttatggacgggaaaaagttggtaatgctgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccatgtttgttttccagtatttaccttgaataagaaagatgaaattaactcacaaatattttcttattgaactcattttttatttgttataacaaaaaatcctcggtactttcgcaccgaggatttgattatgtaatttaagaattacttgttctacgtttctaatta Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 4.0E-65 bit: 250.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 147 Subject End: 280 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 1.0E-62 bit: 242.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 300 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 6.0E-58 bit: 226.0 Len: 146 Query Start:240 Query End:385 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 359 ...............................................................................................................................................................................................................................................tcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaag........................................................................................................................................................................ ...............................................................................................................................................................................................................................................tcatcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaag........................................................................................................................................................................ Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-56 bit: 220.0 Len: 143 Query Start:243 Query End:385 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 290 ..................................................................................................................................................................................................................................................tcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaag........................................................................................................................................................................ ..................................................................................................................................................................................................................................................tcagtatgttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaag........................................................................................................................................................................ Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 190 Query Start:197 Query End:386 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 247 ....................................................................................................................................................................................................tgtaaacatttttcctaagcgtgtctgtttcttaacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagc....................................................................................................................................................................... ....................................................................................................................................................................................................tgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaagc....................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 6.0E-55 bit: 216.0 Len: 149 Query Start:237 Query End:385 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 347 ............................................................................................................................................................................................................................................taatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaag........................................................................................................................................................................ ............................................................................................................................................................................................................................................taatcatcagagagttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaag........................................................................................................................................................................ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 144 Query Start:241 Query End:384 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 194 ................................................................................................................................................................................................................................................catcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ................................................................................................................................................................................................................................................catcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 134 Query Start:251 Query End:384 Subject Strand: POSITIVE Subject Start: 148 Subject End: 281 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-52 bit: 208.0 Len: 133 Query Start:251 Query End:383 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 302 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaa.......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa.......................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-52 bit: 208.0 Len: 137 Query Start:248 Query End:384 Subject Strand: POSITIVE Subject Start: 298 Subject End: 434 .......................................................................................................................................................................................................................................................gtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .......................................................................................................................................................................................................................................................gtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 131 Query Start:254 Query End:384 Subject Strand: POSITIVE Subject Start: 97 Subject End: 227 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 135 Query Start:251 Query End:385 Subject Strand: NEGATIVE Subject Start: 479 Subject End: 613 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaag........................................................................................................................................................................ ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaag........................................................................................................................................................................ Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 131 Query Start:254 Query End:384 Subject Strand: POSITIVE Subject Start: 96 Subject End: 226 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 148 Query Start:237 Query End:384 Subject Strand: POSITIVE Subject Start: 77 Subject End: 224 ............................................................................................................................................................................................................................................taatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ............................................................................................................................................................................................................................................taatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 130 Query Start:255 Query End:384 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 241 ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-47 bit: 190.0 Len: 136 Query Start:251 Query End:386 Subject Strand: NEGATIVE Subject Start: 308 Subject End: 443 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagc....................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaagc....................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 131 Query Start:254 Query End:384 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 245 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaa......................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 135 Query Start:251 Query End:385 Subject Strand: POSITIVE Subject Start: 383 Subject End: 517 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaag........................................................................................................................................................................ ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaag........................................................................................................................................................................ Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 319 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 8.0E-42 bit: 172.0 Len: 143 Query Start:242 Query End:384 Subject Strand: POSITIVE Subject Start: 98 Subject End: 240 .................................................................................................................................................................................................................................................atcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .................................................................................................................................................................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:255 Query End:384 Subject Strand: NEGATIVE Subject Start: 142 Subject End: 271 ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 5.0E-40 bit: 167.0 Len: 128 Query Start:254 Query End:381 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 232 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttac............................................................................................................................................................................ .............................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttac............................................................................................................................................................................ Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 247 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 118 Query Start:229 Query End:346 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 225 ....................................................................................................................................................................................................................................taacttcttaatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaa............................................................................................................................................................................................................... ....................................................................................................................................................................................................................................taactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa............................................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 134 Query Start:251 Query End:384 Subject Strand: POSITIVE Subject Start: 693 Subject End: 826 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa......................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 137 Query Start:248 Query End:384 Subject Strand: POSITIVE Subject Start: 404 Subject End: 540 .......................................................................................................................................................................................................................................................gtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .......................................................................................................................................................................................................................................................gtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 145 Query Start:242 Query End:386 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 399 .................................................................................................................................................................................................................................................atcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagc....................................................................................................................................................................... .................................................................................................................................................................................................................................................atcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaagc....................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 334 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaa-cagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 131 Query Start:254 Query End:384 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 222 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 145 Query Start:239 Query End:383 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 257 ..............................................................................................................................................................................................................................................atcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaa.......................................................................................................................................................................... ..............................................................................................................................................................................................................................................atcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa.......................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 130 Query Start:255 Query End:384 Subject Strand: NEGATIVE Subject Start: 156 Subject End: 285 ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 134 Query Start:251 Query End:384 Subject Strand: POSITIVE Subject Start: 37 Subject End: 170 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 133 Query Start:255 Query End:387 Subject Strand: POSITIVE Subject Start: 179 Subject End: 311 ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagcc...................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagcc...................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:300 Query End:334 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 258 ...........................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaacgcaaaacagccgcttt........................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt........................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 148 Query Start:237 Query End:384 Subject Strand: POSITIVE Subject Start: 314 Subject End: 461 ............................................................................................................................................................................................................................................taatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ............................................................................................................................................................................................................................................taatcatcagtgcgttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 325 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 144 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 108 Query Start:239 Query End:346 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 487 ..............................................................................................................................................................................................................................................atcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaa............................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................atcaccagtgtattacaaaacctattgtttcgcattccaaaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgctttcgcaacgtcaaa............................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 131 Query Start:254 Query End:384 Subject Strand: POSITIVE Subject Start: 346 Subject End: 476 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa......................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 142 Query Start:241 Query End:382 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 331 ................................................................................................................................................................................................................................................catcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttaca........................................................................................................................................................................... ................................................................................................................................................................................................................................................catcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca........................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 134 Query Start:251 Query End:384 Subject Strand: NEGATIVE Subject Start: 80 Subject End: 213 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 3.0E-23 bit: 111.0 Len: 144 Query Start:241 Query End:384 Subject Strand: POSITIVE Subject Start: 177 Subject End: 320 ................................................................................................................................................................................................................................................catcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ................................................................................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 131 Query Start:254 Query End:384 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 275 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .............................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaa......................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 3.0E-20 bit: 101.0 Len: 143 Query Start:242 Query End:384 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 369 .................................................................................................................................................................................................................................................atcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... .................................................................................................................................................................................................................................................atcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaa......................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 3.0E-20 bit: 101.0 Len: 135 Query Start:255 Query End:389 Subject Strand: POSITIVE Subject Start: 179 Subject End: 313 ..............................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagccat.................................................................................................................................................................... ..............................................................................................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaaccat.................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:299 Query End:334 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 259 ..........................................................................................................................................................................................................................................................................................................aaaagcgtaggttttgcaacgcaaaacagccgcttt........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................aaaagcgtaggttttgcaatgcaaaagagccgcttt........................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 142 Query Start:243 Query End:384 Subject Strand: POSITIVE Subject Start: 221 Subject End: 361 ..................................................................................................................................................................................................................................................tcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......................................................................................................................................................................... ..................................................................................................................................................................................................................................................tcagtgtattataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaa......................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:300 Query End:334 Subject Strand: NEGATIVE Subject Start: 278 Subject End: 312 ...........................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaacgcaaaacagccgcttt........................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt........................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 133 Query Start:251 Query End:383 Subject Strand: POSITIVE Subject Start: 258 Subject End: 390 ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaa.......................................................................................................................................................................... ..........................................................................................................................................................................................................................................................ttacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa.......................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 110 Query Start:254 Query End:363 Subject Strand: POSITIVE Subject Start: 106 Subject End: 215 .............................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttt.............................................................................................................................................................................................. .............................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttt.............................................................................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 104 Query Start:243 Query End:346 Subject Strand: POSITIVE Subject Start: 162 Subject End: 265 ..................................................................................................................................................................................................................................................tcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaa............................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................tcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaa............................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAUGGUAUCUUCCUAUCGUUGGUAAGUUGUUCAUAUUCUGUAUUUGUUUUGUGUUAUCUGUUAAUGCAAAAGUAGUGAUUAUUUUCUUAAAUGCUUUGCAUAAUGGGCGUUAAUUUUACUUUAUACCCAUUUUAGGAAUAGUAGAAACUGAAAGGCGAAAACUUAUUUUAUGGACGGGAAAAAGUUGGUAAUGCUGUAAACAUUUUUCCUAAGCGUGUCUGUUUCUUAACUUCUUAAUCAUCAGUGUGUUACAAAACCUAUUGUUUUGCGUUCCAAAAGUGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAACGCAAAACAGCCGCUUUCGCAAUGUCAAAACGCAGUUAUCACUUUUUAAGAGAAUUAUCUUUACAAAGCCAUGUUUGUUUUCCAGUAUUUACCUUGAAUAAGAAAGAUGAAAUUAACUCACAAAUAUUUUCUUAUUGAACUCAUUUUUUAUUUGUUAUAACAAAAAAUCCUCGGUACUUUCGCACCGAGGAUUUGAUUAUGUAAUUUAAGAAUUACUUGUUCUACGUUUCUAAUUA ..(((((((......)))))))..(((((.(((((......(((((((((((((((((.....))))))))).((((.(((.(((((((((((.....((.(((((..(((((..........(((((.....(((((((....((((((.((.(.((.....((........))..(((((((((((..((....))..))).))))))))..)).).)).))))))....)))))))......)))))............(((..(((((.....((((((((((((((((...((((((.(...).))))))...)))))))))))))))))))))...)))))))).)))))))...))))))))))).))).)))).....(((.(((.(((((.((.......)).))).)).))).)))..........))))))))........)))))....((((((...((((((.....(((((((((((........))))))))))).....)))))).))))))..)))))................. (-130.44) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUAGAAACGUAGAACAAGUAAUUCUUAAAUUACAUAAUCAAAUCCUCGGUGCGAAAGUACCGAGGAUUUUUUGUUAUAACAAAUAAAAAAUGAGUUCAAUAAGAAAAUAUUUGUGAGUUAAUUUCAUCUUUCUUAUUCAAGGUAAAUACUGGAAAACAAACAUGGCUUUGUAAAGAUAAUUCUCUUAAAAAGUGAUAACUGCGUUUUGACAUUGCGAAAGCGGCUGUUUUGCGUUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCACUUUUGGAACGCAAAACAAUAGGUUUUGUAACACACUGAUGAUUAAGAAGUUAAGAAACAGACACGCUUAGGAAAAAUGUUUACAGCAUUACCAACUUUUUCCCGUCCAUAAAAUAAGUUUUCGCCUUUCAGUUUCUACUAUUCCUAAAAUGGGUAUAAAGUAAAAUUAACGCCCAUUAUGCAAAGCAUUUAAGAAAAUAAUCACUACUUUUGCAUUAACAGAUAACACAAAACAAAUACAGAAUAUGAACAACUUACCAACGAUAGGAAGAUACCAUUUU ....(((((((...((((..((((((....))))))......(((((((((((((....)))))))))))))(((((....)))))..........)))).....((((((....(((.(((..((((...(((((((.(((.(((......((.(((((....((.(((((...((((......))))..))))).))......((((((.(.((.((((((.((((((((((((..(.((((.......)))).)..)))))))))))).)))))).)).))))))).....))))).))....)))..))).)))))))....))))..))).)))...(((((((.(((............))))))))))..............))))))........)))))))...((((((.((((((..(.((......)).)..)))))).(((((((.......((......)).....))))))).................................................))))))........... (-124.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 914 330 281 72 23 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 914 330 281 223 174 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 914 330 281 116 67 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 914 330 281 57 8 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 909 340 291 64 15 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 900 339 291 125 77 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 893 330 281 57 8 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 885 310 261 229 180 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 885 310 261 56 7 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 885 310 261 183 134 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 868 320 271 199 150 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 865 310 261 189 140 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 856 310 261 216 167 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 846 350 301 53 4 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 793 310 261 203 154 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 790 310 261 203 154 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 788 360 311 54 5 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 784 330 281 168 119 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 784 330 281 55 6 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 784 330 281 116 67 pint:PI0978|5end_hypothetical_protein_904867..905097_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 939 320 271 148 99 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 939 320 271 72 23 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 881 310 261 150 101 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 868 320 271 99 50 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 868 320 271 148 99 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 865 310 261 150 101 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 865 310 261 150 101 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 865 310 261 150 101 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 865 310 261 150 101 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 865 310 261 138 89 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 865 310 261 150 101 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 848 320 271 148 99 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 846 310 261 150 101 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 823 320 271 148 99 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 812 320 271 148 99 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 812 320 271 143 94 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 789 310 261 150 101 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 697 320 271 148 99 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 669 339 291 140 92 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 651 340 291 141 92 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE