Origin IGS: tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tatgtaactattggttcaatagaaagttattgggacagttgttttcccttttcttgcctaatgccgtaactgaaaatcccttttgttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatgtatagatagttaccgaacagttatgcttgtgaaaaatatttacactattacaacccactttttacctatataataaggaacacaagcaaaatagggcagcgatgaaacggtgctttctgtttaaagaaagtgaagctatacgcttattctcccacaattatcgaccgcctcaacta Mask Tandem Repeat Region ================================================ tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Find is-nt database================================================ Query_seq: PI0874:PI0875|PI0874:PI0875:conserved hypothetical protein:conserved hypothetical protein:->->:810342..810747 406 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0874:PI0875|PI0874:PI0875:conserved hypothetical protein:conserved hypothetical protein:->->:810342..810747 406 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0874:PI0875|PI0874:PI0875:conserved hypothetical protein:conserved hypothetical protein:->->:810342..810747 406 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 20 End: 112 ................... M W E N K R I A S L S L N R K H R F I A A L F C L C S L L Y R ...................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 119 End: 346 ...................................................................................................................... M G C N S V N I F H K H N C S V T I Y T S A C Y K T C C F A F Q K R R F Y T V K A A L L Q R K T Y A F A M P K R S Y P F ............................................................ Protein_Len: 30 Strand: + Start: 307 End: 396 .................................................................................................................................................................................................................................................................................................................. M I F T K Q K G F S V T A L G K K R E N N C P N N F L L N Q .......... Protein_Len: 37 Strand: - Start: 182 End: 292 ..................................................................................................................................................................................... R T I F R T T K C E L L T P K V R Y F R S K Q L A F G V S E C H W L A T M .................................................................................................................. Protein_Len: 60 Strand: - Start: 171 End: 377 .......................................................................................................................................................................... N N Q M G F A Y T K C P L L P E K A V C F R R K R L A L A C N D K K L P I I K V F C F P N E T V A N P L F L S F L Q G M ............................. Protein_Len: 47 Strand: - Start: 1 End: 141 L Q P P R Y N H S F L R I A E S E K F L F C R K M A A R N Q K H E K N Y L Y F T P Q L L T F M ......................................................................................................................................................................................................................................................................... tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 74 HP_score: -9.1 Tail_Score: -3.57144 Start: 217 End: 267 Full_Region: TTTTGCATTCCAAAA GCGTAGGTTTTACACGGTAAAAG CGGCT CTTTTGCAACGCAAAACCTACGC TTTCGCAATGCCAAA ........................................................................................................................................................................................................................GCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCAACGCAAAACCTACGC........................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.5 Tail_Score: -4.13767 Start: 217 End: 267 Full_Region: tttggcattgcgaaa gcgtaggttttgcgttgcaaaag agccg cttttaccgtgtaaaacctacgc ttttggaatgcaaaa ........................................................................................................................................................................................................................gcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgc........................................................................................................................................... TransTerm Strand: - Conf: 82 HP_score: -8.1 Tail_Score: -4.27316 Start: 261 End: 289 Full_Region: ccttaaaaaaggata actgcgctttggc att gcgaaagcgtagg ttttgcgttgcaaaa ....................................................................................................................................................................................................................................................................actgcgctttggcattgcgaaagcgtagg..................................................................................................................... TransTerm Strand: + Conf: 79 HP_score: -9.4 Tail_Score: -3.81575 Start: 262 End: 288 Full_Region: TTTGCAACGCAAAAC CTACGCTTTCGC AAT GCCAAAGCGCAG TTATCCTTTTTTAAG .....................................................................................................................................................................................................................................................................CTACGCTTTCGCAATGCCAAAGCGCAG...................................................................................................................... TransTerm Strand: - Conf: 83 HP_score: -11.6 Tail_Score: -3.16068 Start: 262 End: 288 Full_Region: cttaaaaaaggataa ctgcgctttggc att gcgaaagcgtag gttttgcgttgcaaa .....................................................................................................................................................................................................................................................................ctgcgctttggcattgcgaaagcgtag...................................................................................................................... Find igs database================================================ Query_seq: PI0874:PI0875|PI0874:PI0875:conserved hypothetical protein:conserved hypothetical protein:->->:810342..810747 406 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Intra-Species Hit: Count: 50 Min: 1 Max: 406 Len: 406 Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 0.0 bit: 805.0 Len: 406 Query Start:1 Query End:406 Subject Strand: POSITIVE Subject Start: 1 Subject End: 406 tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata tagttgaggcggtcgataattgtgggagaataagcgtatagcttcactttctttaaacagaaagcaccgtttcatcgctgccctattttgcttgtgttccttattatataggtaaaaagtgggttgtaatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggattttcagttacggcattaggcaagaaaagggaaaacaactgtcccaataactttctattgaaccaatagttacata Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 124 Query Start:199 Query End:322 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 266 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaac.................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 123 Query Start:199 Query End:321 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 201 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa..................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 131 Query Start:190 Query End:320 Subject Strand: POSITIVE Subject Start: 178 Subject End: 308 .............................................................................................................................................................................................taaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... .............................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa...................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 6.0E-36 bit: 153.0 Len: 129 Query Start:199 Query End:327 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 322 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaag............................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaccaaag............................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 6.0E-36 bit: 153.0 Len: 141 Query Start:187 Query End:327 Subject Strand: POSITIVE Subject Start: 229 Subject End: 368 ..........................................................................................................................................................................................ttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaag............................................................................... ..........................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcgtttttcaa-tgaattatctttacaaaaccaaag............................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 104 Query Start:199 Query End:302 Subject Strand: POSITIVE Subject Start: 355 Subject End: 458 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaa........................................................................................................ ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaa........................................................................................................ Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 9.0E-35 bit: 149.0 Len: 135 Query Start:187 Query End:321 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 275 ..........................................................................................................................................................................................ttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ..........................................................................................................................................................................................ttataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa..................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 186 Query Start:133 Query End:318 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 375 ....................................................................................................................................tgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttaca........................................................................................ ....................................................................................................................................tgtaaatatttttcacaagggaaactattgcataactatctatacatcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca........................................................................................ Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 145 Query Start:131 Query End:275 Subject Strand: POSITIVE Subject Start: 114 Subject End: 258 ..................................................................................................................................agtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaa................................................................................................................................... ..................................................................................................................................agtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaa................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-33 bit: 143.0 Len: 192 Query Start:131 Query End:322 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 240 ..................................................................................................................................agtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ..................................................................................................................................agtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaac.................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 101 Subject End: 135 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 143 Query Start:177 Query End:319 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 255 ................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaa....................................................................................... ................................................................................................................................................................................catcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa....................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 113 Query Start:187 Query End:299 Subject Strand: NEGATIVE Subject Start: 763 Subject End: 875 ..........................................................................................................................................................................................ttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttt........................................................................................................... ..........................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaattatcattttt........................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 5.0E-27 bit: 123.0 Len: 190 Query Start:133 Query End:322 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 334 ....................................................................................................................................tgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ....................................................................................................................................tgtaaatatttttcgcaggtgtaactgttgtgtaacttgctatgcttcaatgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaac.................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 178 Subject End: 310 .............................................................................................................................................................................................taaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... .............................................................................................................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac.................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 103 Query Start:180 Query End:282 Subject Strand: NEGATIVE Subject Start: 184 Subject End: 286 ...................................................................................................................................................................................cagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaa............................................................................................................................ ...................................................................................................................................................................................cagcgtattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa............................................................................................................................ Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 5.0E-24 bit: 113.0 Len: 189 Query Start:132 Query End:320 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 388 ...................................................................................................................................gtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ...................................................................................................................................gtgtaaatatttttcgcaagttcaactgttgcttaactctctaatcatcagagagttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa...................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 250 Subject End: 284 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 136 Query Start:199 Query End:334 Subject Strand: POSITIVE Subject Start: 65 Subject End: 200 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggatttt........................................................................ ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttt........................................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 144 Query Start:177 Query End:320 Subject Strand: POSITIVE Subject Start: 241 Subject End: 384 ................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ................................................................................................................................................................................catcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa...................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 123 Query Start:199 Query End:321 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 313 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ......................................................................................................................................................................................................ttgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa..................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 143 Query Start:177 Query End:319 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 312 ................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaa....................................................................................... ................................................................................................................................................................................catcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa....................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 219 Subject End: 253 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 118 Query Start:199 Query End:316 Subject Strand: NEGATIVE Subject Start: 507 Subject End: 624 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatcttta.......................................................................................... ......................................................................................................................................................................................................ttgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta.......................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 190 Query Start:132 Query End:321 Subject Strand: POSITIVE Subject Start: 246 Subject End: 435 ...................................................................................................................................gtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ...................................................................................................................................gtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa..................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 350 Subject End: 384 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 157 Query Start:165 Query End:321 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 267 ....................................................................................................................................................................taactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ....................................................................................................................................................................taactatctaaccatcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa..................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 162 Subject End: 196 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 101 Query Start:199 Query End:299 Subject Strand: POSITIVE Subject Start: 115 Subject End: 215 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttt........................................................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttt........................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 144 Query Start:178 Query End:321 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 369 .................................................................................................................................................................................atcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... .................................................................................................................................................................................atcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa..................................................................................... Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 100 Query Start:220 Query End:319 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 262 ...........................................................................................................................................................................................................................taggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaa....................................................................................... ...........................................................................................................................................................................................................................taggttttacacagtaaaagcggctgttttgcgatgcaaaatagccgcttttgcaatgccaaagcgcagttatcactttttaagagaattatctttacaa....................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 188 Query Start:133 Query End:320 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 667 ....................................................................................................................................tgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ....................................................................................................................................tgtaaatatttttcgcaagtataactgttatataacttattatgtatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa...................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 530 Subject End: 564 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 124 Query Start:199 Query End:322 Subject Strand: POSITIVE Subject Start: 105 Subject End: 228 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ......................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac.................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 124 Query Start:199 Query End:322 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 288 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ......................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaac.................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 195 Query Start:128 Query End:322 Subject Strand: POSITIVE Subject Start: 353 Subject End: 547 ...............................................................................................................................aatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ...............................................................................................................................aatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 150 Query Start:171 Query End:320 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 298 ..........................................................................................................................................................................tctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ..........................................................................................................................................................................tctatacgtcagtatgttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa...................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 199 Subject End: 233 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 123 Query Start:199 Query End:321 Subject Strand: POSITIVE Subject Start: 160 Subject End: 282 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ......................................................................................................................................................................................................ttgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa..................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 231 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 139 Query Start:184 Query End:322 Subject Strand: POSITIVE Subject Start: 104 Subject End: 242 .......................................................................................................................................................................................gtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... .......................................................................................................................................................................................gtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac.................................................................................... HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 156 Subject End: 190 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 127 Query Start:199 Query End:325 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 236 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaa................................................................................. ......................................................................................................................................................................................................ttgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaacaaa................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 165 Subject End: 199 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 122 Query Start:199 Query End:320 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 431 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ......................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa...................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 360 Subject End: 394 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 134 Query Start:199 Query End:332 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 307 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggatt.......................................................................... ......................................................................................................................................................................................................ttgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaaacaaagggatt.......................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 148 Query Start:177 Query End:324 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 291 ................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaa.................................................................................. ................................................................................................................................................................................catcagcgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcaaggcaaaagagccgcttttggacggtaaaacctacactttcgcagtgccaaatcgaaattatcgtttttcttcagaattatctttacaaaacaa.................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 122 Query Start:199 Query End:320 Subject Strand: POSITIVE Subject Start: 395 Subject End: 516 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa...................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 142 Query Start:184 Query End:325 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 196 .......................................................................................................................................................................................gtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaa................................................................................. .......................................................................................................................................................................................gtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaagcaaa................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 110 Subject End: 144 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 157 Query Start:165 Query End:321 Subject Strand: POSITIVE Subject Start: 69 Subject End: 225 ....................................................................................................................................................................taactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ....................................................................................................................................................................taactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa..................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 144 Query Start:177 Query End:320 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 358 ................................................................................................................................................................................catcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... ................................................................................................................................................................................catcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa...................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 265 Subject End: 299 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 127 Query Start:199 Query End:325 Subject Strand: POSITIVE Subject Start: 106 Subject End: 232 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaa................................................................................. ......................................................................................................................................................................................................ttgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaa................................................................................. HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 177 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 190 Query Start:132 Query End:321 Subject Strand: POSITIVE Subject Start: 638 Subject End: 827 ...................................................................................................................................gtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... ...................................................................................................................................gtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa..................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 742 Subject End: 776 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 158 Query Start:165 Query End:322 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 371 ....................................................................................................................................................................taactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ....................................................................................................................................................................taacaatctgtatatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaac.................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 266 Subject End: 300 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 119 Query Start:199 Query End:317 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 223 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttac......................................................................................... ......................................................................................................................................................................................................ttgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttac......................................................................................... HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 152 Subject End: 186 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 4.0E-9 bit: 63.9 Len: 144 Query Start:178 Query End:321 Subject Strand: POSITIVE Subject Start: 75 Subject End: 218 .................................................................................................................................................................................atcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa..................................................................................... .................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaatcgaaattaccattttctaaagaaataatctttacaaaa..................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 167 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 119 Query Start:202 Query End:320 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 375 .........................................................................................................................................................................................................ttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa...................................................................................... .........................................................................................................................................................................................................ttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa...................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 2.0E-7 bit: 58.0 Len: 145 Query Start:178 Query End:322 Subject Strand: POSITIVE Subject Start: 398 Subject End: 542 .................................................................................................................................................................................atcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... .................................................................................................................................................................................atcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaac.................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-6 bit: 56.0 Len: 124 Query Start:199 Query End:322 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 235 ......................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................... ......................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaac.................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:236 Query End:270 Subject Strand: POSITIVE Subject Start: 164 Subject End: 198 ...........................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................ ...........................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUUGAGGCGGUCGAUAAUUGUGGGAGAAUAAGCGUAUAGCUUCACUUUCUUUAAACAGAAAGCACCGUUUCAUCGCUGCCCUAUUUUGCUUGUGUUCCUUAUUAUAUAGGUAAAAAGUGGGUUGUAAUAGUGUAAAUAUUUUUCACAAGCAUAACUGUUCGGUAACUAUCUAUACAUCAGCGUGUUAUAAAACGUGUUGUUUUGCAUUCCAAAAGCGUAGGUUUUACACGGUAAAAGCGGCUCUUUUGCAACGCAAAACCUACGCUUUCGCAAUGCCAAAGCGCAGUUAUCCUUUUUUAAGGGAAUUAUCUUUACAAAACAAAAGGGAUUUUCAGUUACGGCAUUAGGCAAGAAAAGGGAAAACAACUGUCCCAAUAACUUUCUAUUGAACCAAUAGUUACAUA ....(((((((((.(....((((..(((((.((((.....))))....)))))...))))....))))))))))..((.((((..((((((((((((........))))))))))))...)))).))....(((.(((....)))))).....((((((((.(((..............(((..((((....(((.(((.((((((((((.(.((((((((((((((.(...(((((((.....)))))))...).)))))))))))))).).)))).)))))))))))).(((((((((..(..((((.(((((........)))))))))..).......((.....))..))))))))).)))).)))...(((((......))))).))))))))))).... (-107.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUGUAACUAUUGGUUCAAUAGAAAGUUAUUGGGACAGUUGUUUUCCCUUUUCUUGCCUAAUGCCGUAACUGAAAAUCCCUUUUGUUUUGUAAAGAUAAUUCCCUUAAAAAAGGAUAACUGCGCUUUGGCAUUGCGAAAGCGUAGGUUUUGCGUUGCAAAAGAGCCGCUUUUACCGUGUAAAACCUACGCUUUUGGAAUGCAAAACAACACGUUUUAUAACACGCUGAUGUAUAGAUAGUUACCGAACAGUUAUGCUUGUGAAAAAUAUUUACACUAUUACAACCCACUUUUUACCUAUAUAAUAAGGAACACAAGCAAAAUAGGGCAGCGAUGAAACGGUGCUUUCUGUUUAAAGAAAGUGAAGCUAUACGCUUAUUCUCCCACAAUUAUCGACCGCCUCAACUA ...(((((((((....((.(((...(((((.(((((.(((((((..................((.((............((((........)))).......((((....))))...)).))......(((((.(((((((((((((((((((..(.(((((.....))))).)..))))))))))))))))))).))))).)))))))..))))))))))...))).))....))))))))).....((((.((((((((...((((.......))))...............(((........)))..)))))))).....((((.(((((((...((.(((((((......))))))).((((.....))))......))....)))))).).)))).)))). (-105.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 823 250 201 215 166 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 823 250 201 60 11 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 810 270 221 80 31 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 775 250 201 122 73 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 749 250 201 187 138 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 749 250 201 60 11 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 749 250 201 169 120 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 749 250 201 188 139 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 740 280 232 90 42 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 732 320 271 72 23 pint:PI1041|5end_hypothetical_protein_960443..960673_POSITIVE 705 279 231 117 69 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 701 320 271 57 8 pint:PI1540|5end_hypothetical_protein_1461362..1461592_POSITIVE 692 320 271 116 67 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 688 290 241 140 94 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 688 290 241 57 11 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 671 279 231 202 149 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 650 320 271 78 29 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 648 280 231 86 37 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 648 280 231 130 81 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 644 280 231 68 19 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 903 280 231 145 96 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 852 280 231 123 74 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 781 280 231 145 96 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 781 280 231 54 5 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 676 278 232 144 93 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 660 280 231 128 74 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 625 290 241 106 60 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 602 240 191 149 100 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 591 278 231 144 100 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 579 280 231 114 60 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 571 279 231 150 110 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 569 240 191 144 95 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 569 240 191 144 95 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 569 240 191 144 95 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 569 240 191 144 95 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 569 240 191 83 34 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 569 240 191 132 83 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 569 240 191 132 83 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 569 240 191 144 95 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 569 240 191 132 83 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE