Origin IGS: gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttggctgacaaatttacctatttatttttaaaagtctgcaattttggcagagtttaacaaacactaatagttttcttttgacttaccagaaacccctgcgaatatacctgcgcttctcccataatacagaaaaactgacggaaggtttcgcttcggctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttacacatctttcatcttttctcacctatctaataaggtcttttgctctgcttcaagtttcagcaaacagcaataattctgaaaacattgctctttatctaaaaacttttgattaactttgtagc Mask Tandem Repeat Region ================================================ gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Find is-nt database================================================ Query_seq: PI0831:PI0832|PI0831:PI0832:hypothetical protein:sigma-54-dependent transcriptional regulator:->->:768509..768973 465 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0831:PI0832|PI0831:PI0832:hypothetical protein:sigma-54-dependent transcriptional regulator:->->:768509..768973 465 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0831:PI0832|PI0831:PI0832:hypothetical protein:sigma-54-dependent transcriptional regulator:->->:768509..768973 465 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 214 End: 399 ..................................................................................................................................................................................................................... M H G K S G C F A L Q N L R F R N V K A Q L S L F N G I I F T K P K R N L P S V F L Y Y G R S A G I F A G V S G K S K E .................................................................. Protein_Len: 60 Strand: + Start: 101 End: 409 .................................................................................................... M R K D E R C V N I F H N N I F C V T A L L S T L C K T Y C F A F Q K R R F C T V K A A V L H C K T Y A F A T S K R S C ........................................................ Protein_Len: 50 Strand: - Start: 305 End: 454 ................................................................................................................................................................................................................................................................................................................ L A S A F G E T L K E T N H S F R L Y I R L P K Q Y T L L F S N T N T L S Q W F Q L S K F I F L Y M ........... Protein_Len: 60 Strand: - Start: 96 End: 299 ............................................................................................... H L Y K E C C Y R K R L Q K I I L A K Y F R N N Q T G F A Y T K C P L L P Q K A N C F R R K R L T L A C N D S K L P I M ...................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 53 End: 142 .................................................... Q Q K S F S S A S C F V K N S L H S F I F S T Y I N K V V M ................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 13 End: 129 ............ D F T K L Y L A I N E S N N S N A S V Q L L A F S R I L Y T L F S S L H T F M ................................................................................................................................................................................................................................................................................................................................................ gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -15.0 Tail_Score: -3.54424 Start: 205 End: 255 Full_Region: TTTTGCGTTCCAAAA GCGTAGGTTTTGCACGGTAAAA GCGGCTG TTTTGCATTGCAAAACCTACGC TTTCGCAACGTCAAA ............................................................................................................................................................................................................GCGTAGGTTTTGCACGGTAAAAGCGGCTGTTTTGCATTGCAAAACCTACGC.................................................................................................................................................................................................................. TransTerm Strand: - Conf: 95 HP_score: -12.8 Tail_Score: -4.07568 Start: 205 End: 255 Full_Region: tttgacgttgcgaaa gcgtaggttttgcaatgcaaaa cagccgc ttttaccgtgcaaaacctacgc ttttggaacgcaaaa ............................................................................................................................................................................................................gcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgc.................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PI0831:PI0832|PI0831:PI0832:hypothetical protein:sigma-54-dependent transcriptional regulator:->->:768509..768973 465 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Intra-Species Hit: Count: 57 Min: 1 Max: 465 Len: 465 Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 0.0 bit: 922.0 Len: 465 Query Start:1 Query End:465 Subject Strand: POSITIVE Subject Start: 1 Subject End: 465 gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa gctacaaagttaatcaaaagtttttagataaagagcaatgttttcagaattattgctgtttgctgaaacttgaagcagagcaaaagaccttattagataggtgagaaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcgaaaccttccgtcagtttttctgtattatgggagaagcgcaggtatattcgcaggggtttctggtaagtcaaaagaaaactattagtgtttgttaaactctgccaaaattgcagacttttaaaaataaataggtaaatttgtcagccaa Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-49 bit: 196.0 Len: 131 Query Start:178 Query End:308 Subject Strand: NEGATIVE Subject Start: 142 Subject End: 272 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 107 Query Start:164 Query End:270 Subject Strand: POSITIVE Subject Start: 71 Subject End: 177 ...................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... ...................................................................................................................................................................ttatcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 143 Query Start:166 Query End:308 Subject Strand: POSITIVE Subject Start: 166 Subject End: 308 .....................................................................................................................................................................atcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .....................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 145 Query Start:164 Query End:308 Subject Strand: POSITIVE Subject Start: 332 Subject End: 476 ...................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ...................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 321 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 330 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 205 Query Start:106 Query End:310 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 262 .........................................................................................................aaaagatgaaagatgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagc........................................................................................................................................................... .........................................................................................................aaaagatgatagacgtgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaagc........................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 7.0E-39 bit: 163.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 180 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 128 Query Start:179 Query End:306 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 317 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttaca............................................................................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca............................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 136 Query Start:173 Query End:308 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 280 ............................................................................................................................................................................ctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ............................................................................................................................................................................ctttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 131 Query Start:178 Query End:308 Subject Strand: POSITIVE Subject Start: 190 Subject End: 320 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .................................................................................................................................................................................taaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 132 Query Start:178 Query End:309 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 330 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ .................................................................................................................................................................................taaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaag............................................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 143 Query Start:166 Query End:308 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 254 .....................................................................................................................................................................atcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .....................................................................................................................................................................atcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 131 Query Start:179 Query End:309 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 278 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaag............................................................................................................................................................ Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 143 Query Start:166 Query End:308 Subject Strand: POSITIVE Subject Start: 292 Subject End: 434 .....................................................................................................................................................................atcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .....................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:224 Query End:258 Subject Strand: NEGATIVE Subject Start: 350 Subject End: 384 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 122 Query Start:187 Query End:308 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 348 ..........................................................................................................................................................................................ttgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..........................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaa............................................................................................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 48 Query Start:202 Query End:249 Subject Strand: POSITIVE Subject Start: 277 Subject End: 324 .........................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaac........................................................................................................................................................................................................................ .........................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaac........................................................................................................................................................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 186 Query Start:120 Query End:305 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 290 .......................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttac................................................................................................................................................................ .......................................................................................................................gtgtaaatatttttcacaggcataactattgtgtaacttacttgttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttac................................................................................................................................................................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 80 Subject End: 209 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 129 Query Start:179 Query End:307 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 298 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaa.............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa.............................................................................................................................................................. HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:224 Query End:258 Subject Strand: POSITIVE Subject Start: 219 Subject End: 253 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 188 Query Start:121 Query End:308 Subject Strand: POSITIVE Subject Start: 94 Subject End: 281 ........................................................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ........................................................................................................................tgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 127 Query Start:183 Query End:309 Subject Strand: NEGATIVE Subject Start: 502 Subject End: 628 ......................................................................................................................................................................................cctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ ......................................................................................................................................................................................cctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatctttataaag............................................................................................................................................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 147 Query Start:164 Query End:310 Subject Strand: NEGATIVE Subject Start: 308 Subject End: 454 ...................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagc........................................................................................................................................................... ...................................................................................................................................................................ttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaagc........................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 131 Query Start:178 Query End:308 Subject Strand: POSITIVE Subject Start: 110 Subject End: 240 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa............................................................................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 130 Query Start:178 Query End:307 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 242 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaa.............................................................................................................................................................. .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa.............................................................................................................................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 157 Query Start:152 Query End:308 Subject Strand: POSITIVE Subject Start: 70 Subject End: 226 .......................................................................................................................................................gtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .......................................................................................................................................................gtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 104 Query Start:167 Query End:270 Subject Strand: POSITIVE Subject Start: 45 Subject End: 148 ......................................................................................................................................................................tcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... ......................................................................................................................................................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa................................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 6.0E-30 bit: 133.0 Len: 191 Query Start:118 Query End:308 Subject Strand: POSITIVE Subject Start: 34 Subject End: 224 .....................................................................................................................atgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .....................................................................................................................atgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 130 Query Start:179 Query End:308 Subject Strand: POSITIVE Subject Start: 98 Subject End: 227 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:224 Query End:258 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 177 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 133 Query Start:179 Query End:311 Subject Strand: POSITIVE Subject Start: 255 Subject End: 387 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagcc.......................................................................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaagcc.......................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:224 Query End:258 Subject Strand: NEGATIVE Subject Start: 300 Subject End: 334 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 145 Query Start:165 Query End:309 Subject Strand: NEGATIVE Subject Start: 479 Subject End: 623 ....................................................................................................................................................................tatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ ....................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaag............................................................................................................................................................ Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 131 Query Start:178 Query End:308 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 275 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 131 Query Start:178 Query End:308 Subject Strand: NEGATIVE Subject Start: 183 Subject End: 313 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaa............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 27 Query Start:223 Query End:249 Subject Strand: POSITIVE Subject Start: 232 Subject End: 258 ..............................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac........................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac........................................................................................................................................................................................................................ Subject: pint_PI0560_PI0561|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[508971,509091]|121 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 111 Query Start:122 Query End:232 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 114 .........................................................................................................................gtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggct......................................................................................................................................................................................................................................... .........................................................................................................................gtaaatatttttcacaagcaaagctttcacgcaacctcttaattatcaacgctttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggct......................................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 147 Subject End: 276 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaa............................................................................................................................................................. HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:224 Query End:258 Subject Strand: POSITIVE Subject Start: 197 Subject End: 231 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 190 Query Start:121 Query End:310 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 444 ........................................................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagc........................................................................................................................................................... ........................................................................................................................tgtaaatatttttcacaaacataactattgcataacttgttcgttatcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaagc........................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 296 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaa............................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:224 Query End:258 Subject Strand: POSITIVE Subject Start: 217 Subject End: 251 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcgctgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 9.0E-26 bit: 119.0 Len: 100 Query Start:164 Query End:263 Subject Strand: POSITIVE Subject Start: 92 Subject End: 191 ...................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaa.......................................................................................................................................................................................................... ...................................................................................................................................................................ttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaa.......................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 131 Query Start:179 Query End:309 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 344 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaag............................................................................................................................................................ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:121 Query End:270 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 257 ........................................................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... ........................................................................................................................tgtaaatatttttcgcaaacatagctattgcgtaactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa................................................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 244 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaa............................................................................................................................................................. Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 151 Query Start:120 Query End:270 Subject Strand: POSITIVE Subject Start: 357 Subject End: 507 .......................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... .......................................................................................................................gtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 189 Query Start:120 Query End:308 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 302 .......................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaact-gctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .......................................................................................................................gtgtaaatatttttcgcaaccgtatctcttgcgcaacacgctct-ttatcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 189 Query Start:120 Query End:308 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 374 .......................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. .......................................................................................................................gtgtaaatatttttcacaacaatacctatcgcataacaaactaatcatcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 143 Query Start:121 Query End:263 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 329 ........................................................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaa.......................................................................................................................................................................................................... ........................................................................................................................tgtaaatatttttcacaagaatacctattgtataacattctcattatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaa.......................................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 130 Query Start:179 Query End:308 Subject Strand: POSITIVE Subject Start: 697 Subject End: 826 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa............................................................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 150 Query Start:121 Query End:270 Subject Strand: POSITIVE Subject Start: 30 Subject End: 179 ........................................................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... ........................................................................................................................tgtaaatatttttcacaagagtatctcttgtgtaatcgtcttgttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaa................................................................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 154 Query Start:165 Query End:318 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 359 ....................................................................................................................................................................tatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaagccgaagcga................................................................................................................................................... ....................................................................................................................................................................tatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaaccgaggcga................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:224 Query End:258 Subject Strand: POSITIVE Subject Start: 266 Subject End: 300 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 145 Query Start:165 Query End:309 Subject Strand: POSITIVE Subject Start: 373 Subject End: 517 ....................................................................................................................................................................tatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaag............................................................................................................................................................ ....................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaag............................................................................................................................................................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:224 Query End:258 Subject Strand: NEGATIVE Subject Start: 432 Subject End: 466 ...............................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................... ...............................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacctacgcttt............................................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 141 Query Start:178 Query End:318 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 286 .................................................................................................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcacttt-ttaacggaattatctttacaaagccgaagcga................................................................................................................................................... .................................................................................................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaatcgaagcga................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 130 Query Start:179 Query End:308 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 221 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 100 Query Start:208 Query End:307 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 262 ...............................................................................................................................................................................................................taggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaa.............................................................................................................................................................. ...............................................................................................................................................................................................................taggttttacacagtaaaagcggctgttttgcgatgcaaaatagccgcttttgcaatgccaaagcgcagttatcactttttaagagaattatctttacaa.............................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 144 Query Start:165 Query End:308 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 154 ....................................................................................................................................................................tatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ....................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaa............................................................................................................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 5.0E-15 bit: 83.8 Len: 130 Query Start:179 Query End:308 Subject Strand: POSITIVE Subject Start: 411 Subject End: 540 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................................................................. ..................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaa............................................................................................................................................................. Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 129 Query Start:120 Query End:248 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 277 .......................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaa......................................................................................................................................................................................................................... .......................................................................................................................gtgtaaatatttttcgcaagagtatctttcacttaactctctcactatcaacactttgcaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaa......................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 107 Query Start:164 Query End:270 Subject Strand: POSITIVE Subject Start: 26 Subject End: 132 ...................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................................................................... ...................................................................................................................................................................ttatcaatgctttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaa................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 140 Query Start:179 Query End:318 Subject Strand: POSITIVE Subject Start: 332 Subject End: 471 ..................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcacttt-ttaacggaattatctttacaaagccgaagcga................................................................................................................................................... ..................................................................................................................................................................................aaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaaccaaagcga................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUACAAAGUUAAUCAAAAGUUUUUAGAUAAAGAGCAAUGUUUUCAGAAUUAUUGCUGUUUGCUGAAACUUGAAGCAGAGCAAAAGACCUUAUUAGAUAGGUGAGAAAAGAUGAAAGAUGUGUAAAUAUUUUUCACAACAAUAUCUUUUGCGUAACUGCUUUAUUAUCAACGCUUUGUAAAACCUAUUGUUUUGCGUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUGUUUUGCAUUGCAAAACCUACGCUUUCGCAACGUCAAAGCGCAGUUGUCACUUUUUAACGGAAUUAUCUUUACAAAGCCGAAGCGAAACCUUCCGUCAGUUUUUCUGUAUUAUGGGAGAAGCGCAGGUAUAUUCGCAGGGGUUUCUGGUAAGUCAAAAGAAAACUAUUAGUGUUUGUUAAACUCUGCCAAAAUUGCAGACUUUUAAAAAUAAAUAGGUAAAUUUGUCAGCCAA ((((((((.(((.......(((((((((.....(((((((..........)))))))((((((.((((((((((((((.((((((((.((((((.....))))))......((((((((((....))))))))))........))))))))....))))))))........((((((((((.......((((((((((.(.(((((((((((((((((..((((((.......))))))..))))))))))))))))).).)))).))))))...((((........)))).........))))))))))....(((((.....((....((((((((........))))))))...))....)))))...)))))).(((((((..((...((((.......)))).))..))).))))......)))))).))))))))).......))).))))).)))... (-134.64) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGGCUGACAAAUUUACCUAUUUAUUUUUAAAAGUCUGCAAUUUUGGCAGAGUUUAACAAACACUAAUAGUUUUCUUUUGACUUACCAGAAACCCCUGCGAAUAUACCUGCGCUUCUCCCAUAAUACAGAAAAACUGACGGAAGGUUUCGCUUCGGCUUUGUAAAGAUAAUUCCGUUAAAAAGUGACAACUGCGCUUUGACGUUGCGAAAGCGUAGGUUUUGCAAUGCAAAACAGCCGCUUUUACCGUGCAAAACCUACGCUUUUGGAACGCAAAACAAUAGGUUUUACAAAGCGUUGAUAAUAAAGCAGUUACGCAAAAGAUAUUGUUGUGAAAAAUAUUUACACAUCUUUCAUCUUUUCUCACCUAUCUAAUAAGGUCUUUUGCUCUGCUUCAAGUUUCAGCAAACAGCAAUAAUUCUGAAAACAUUGCUCUUUAUCUAAAAACUUUUGAUUAACUUUGUAGC ...((((.((((.(((..((....((((((((((...(((((.((..(((((((....((((.......(((...(((((((......((((((((.(((..........))).............(((.....)))..))..))))))((....)).................)))))))...)))..(.((((((((.((((.(((((((((((((((((((....((((.......))))....))))))))))))))))))).)))).(((((.....))))).)))))))).)......((((((....(((((((((.(((((((((.(((....................))).))))......))))).))))))))).))))))...))))..((.....))...)))))))..)).))))).))))...))))))....))..))).)))))))) (-110.85) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 914 240 191 189 140 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 914 240 191 62 13 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 914 240 191 171 122 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 905 230 181 52 3 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 897 239 191 189 141 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 885 230 181 207 158 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 885 230 181 52 3 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 876 239 193 47 1 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 842 239 191 123 75 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 767 258 212 108 62 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 760 229 181 224 176 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 760 229 181 51 3 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 760 229 181 178 130 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 757 270 221 92 43 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 740 229 181 184 136 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 740 229 181 198 150 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 740 229 181 91 43 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 740 229 181 184 136 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 731 229 181 211 163 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 724 300 253 79 32 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 885 230 181 107 58 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 885 230 181 85 36 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 882 230 181 151 102 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 828 230 181 107 58 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 760 229 181 133 85 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 760 229 181 57 9 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 756 229 181 145 97 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 740 229 181 145 97 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 740 229 181 145 97 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 740 229 181 145 97 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 740 229 181 145 97 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 740 229 181 84 36 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 740 229 181 133 85 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 740 229 181 133 85 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 740 229 181 145 97 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 722 229 181 133 85 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 722 229 181 128 80 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 716 230 181 137 85 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 706 229 181 145 97 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 681 207 161 150 104 pint:PI2023|3end_hypothetical_protein_1978832..1978982_POSITIVE