Origin IGS: taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ggcacagattgtttttatatcgcttacaaaagtaagaaatatttttctatttccaatgattcacctgcctgcaacattcctctaagttttcatttcagggggttatgctcctactccatttcgcctatacaccttattacaataggtagaaaaaggcaacaatggtgtaaatatttttcacaacaatacctatcgcataacaaactaatcatcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaaacaaagggattatcttgtaacggctttcggtaatacaaagaaaatagttctactattaaagctctgctgaaacgattttttgccaccattcttgtatatacttactcgaacagaacgtatataaaaaatccctttcgctaagtgctgaaagggattttctgtatttgttgttttgctgaaatta Mask Tandem Repeat Region ================================================ taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Find is-nt database================================================ Query_seq: PI0794:PI0796|PI0794:PI0796:long-chain-fatty-acid--CoA ligase:competence protein:->->:732926..733463 538 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0794:PI0796|PI0794:PI0796:long-chain-fatty-acid--CoA ligase:competence protein:->->:732926..733463 538 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0794:PI0796|PI0794:PI0796:long-chain-fatty-acid--CoA ligase:competence protein:->->:732926..733463 538 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 56 End: 172 ....................................................... M F Y I R S V R V S I Y K N G G K K S F Q Q S F N S R T I F F V L P K A V T R .............................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 218 End: 307 ......................................................................................................................................................................................................................... M R F G V A K A A L L C C K T Y A F T V Q N S R F C N A K Q ....................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 211 End: 324 .................................................................................................................................................................................................................. M I T A L W R C E S G S F V L Q N L R F Y R A K Q P L L Q C E T I G F V R R ...................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 96 End: 425 ............................................................................................... M V A K N R F S R A L I V E L F S L Y Y R K P L Q D N P F V F V K I I L L K I D N C A L A L R K R L F C A A K P T L L P ................................................................................................................. Protein_Len: 60 Strand: - Start: 155 End: 520 .......................................................................................................................................................... H S L Y Q Q S F Y K C W Q Q R K R G I T I L H I P S I S Y S C L G R F H F S L P I N C A P S D N S I S F Y K K S K Y A M .................. Protein_Len: 47 Strand: - Start: 118 End: 258 ..................................................................................................................... C L K L L L V I K K T N G F A T V L Y D R Q K Q L S L E R L F Q Y S R K P T A F A A R K H Q M ........................................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: - Start: 9 End: 110 ........ C F L L Y L F D R E A S L S L S K K Y V N Q E L L Y I C S H H C F M ............................................................................................................................................................................................................................................................................................................................................................................................................................................ taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 63 HP_score: -6.1 Tail_Score: -3.67611 Start: 18 End: 69 Full_Region: ATTTCAGCAAAACAA CAAATACAGAAAATCCCTTTCAGC ACTTA GCGAAAGGGATTTTTTATATACG TTCTGTTCGAGTAAG .................CAAATACAGAAAATCCCTTTCAGCACTTAGCGAAAGGGATTTTTTATATACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 74 HP_score: -9.9 Tail_Score: -2.66255 Start: 22 End: 65 Full_Region: CAGCAAAACAACAAA TACAGAAAATCCCTTTCAGC ACTTA GCGAAAGGGATTTTTTATA TACGTTCTGTTCGAG .....................TACAGAAAATCCCTTTCAGCACTTAGCGAAAGGGATTTTTTATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -9.9 Tail_Score: -4.70107 Start: 22 End: 65 Full_Region: ctcgaacagaacgta tataaaaaatccctttcgc taagt gctgaaagggattttctgta tttgttgttttgctg .....................tataaaaaatccctttcgctaagtgctgaaagggattttctgta......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -8.4 Tail_Score: -4.77778 Start: 31 End: 56 Full_Region: aacgtatataaaaaa tccctttcgc taagt gctgaaaggga ttttctgtatttgtt ..............................tccctttcgctaagtgctgaaaggga.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 74 HP_score: -4.0 Tail_Score: -5.10033 Start: 130 End: 140 Full_Region: TCAGCAGAGCTTTAA TAGT AGA ACTA TTTTCTTTGTATTAC .................................................................................................................................TAGTAGAACTA.............................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 89 HP_score: -11.2 Tail_Score: -4.13767 Start: 239 End: 289 Full_Region: TTTGGCGTTGCGAAA GCGGCTCTTTTGTGCTGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGCAATGCGAAA ..............................................................................................................................................................................................................................................GCGGCTCTTTTGTGCTGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC......................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 75 HP_score: -9.0 Tail_Score: -3.53012 Start: 239 End: 289 Full_Region: tttcgcattgcaaaa gcggctgttttgcacggtaaaagc gta ggttttgcagcacaaaagagccgc tttcgcaacgccaaa ..............................................................................................................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgc......................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI0794:PI0796|PI0794:PI0796:long-chain-fatty-acid--CoA ligase:competence protein:->->:732926..733463 538 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Intra-Species Hit: Count: 48 Min: 1 Max: 538 Len: 538 Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 0.0 bit: 1066.0 Len: 538 Query Start:1 Query End:538 Subject Strand: POSITIVE Subject Start: 1 Subject End: 538 taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc taatttcagcaaaacaacaaatacagaaaatccctttcagcacttagcgaaagggattttttatatacgttctgttcgagtaagtatatacaagaatggtggcaaaaaatcgtttcagcagagctttaatagtagaactattttctttgtattaccgaaagccgttacaagataatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttctacctattgtaataaggtgtataggcgaaatggagtaggagcataaccccctgaaatgaaaacttagaggaatgttgcaggcaggtgaatcattggaaatagaaaaatatttcttacttttgtaagcgatataaaaacaatctgtgcc Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 147 Query Start:182 Query End:328 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 285 .....................................................................................................................................................................................tgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. .....................................................................................................................................................................................tgtttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 150 Query Start:185 Query End:334 Subject Strand: POSITIVE Subject Start: 111 Subject End: 260 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattag............................................................................................................................................................................................................ ........................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttag............................................................................................................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 9.0E-54 bit: 212.0 Len: 191 Query Start:184 Query End:374 Subject Strand: NEGATIVE Subject Start: 36 Subject End: 226 .......................................................................................................................................................................................tttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacac.................................................................................................................................................................... .......................................................................................................................................................................................tttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttacac.................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 9.0E-54 bit: 212.0 Len: 143 Query Start:186 Query End:328 Subject Strand: POSITIVE Subject Start: 480 Subject End: 622 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. .........................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 190 Query Start:185 Query End:374 Subject Strand: POSITIVE Subject Start: 50 Subject End: 239 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacac.................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacac.................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-52 bit: 206.0 Len: 132 Query Start:185 Query End:316 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 227 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg.............................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg.............................................................................................................................................................................................................................. Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 135 Query Start:185 Query End:319 Subject Strand: POSITIVE Subject Start: 166 Subject End: 300 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 6.0E-49 bit: 196.0 Len: 143 Query Start:186 Query End:328 Subject Strand: POSITIVE Subject Start: 310 Subject End: 452 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. .........................................................................................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 134 Query Start:186 Query End:319 Subject Strand: POSITIVE Subject Start: 215 Subject End: 348 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 134 Query Start:186 Query End:319 Subject Strand: POSITIVE Subject Start: 60 Subject End: 193 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 9.0E-48 bit: 192.0 Len: 145 Query Start:185 Query End:329 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 435 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatg................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatg................................................................................................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 148 Query Start:187 Query End:334 Subject Strand: POSITIVE Subject Start: 170 Subject End: 317 ..........................................................................................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattag............................................................................................................................................................................................................ ..........................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttag............................................................................................................................................................................................................ Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 135 Query Start:185 Query End:319 Subject Strand: POSITIVE Subject Start: 146 Subject End: 280 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 135 Query Start:185 Query End:319 Subject Strand: NEGATIVE Subject Start: 693 Subject End: 827 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 134 Query Start:186 Query End:319 Subject Strand: POSITIVE Subject Start: 149 Subject End: 282 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 134 Query Start:186 Query End:319 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 384 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa........................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaa........................................................................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 140 Query Start:189 Query End:328 Subject Strand: POSITIVE Subject Start: 105 Subject End: 244 ............................................................................................................................................................................................gtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ............................................................................................................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:185 Query End:316 Subject Strand: POSITIVE Subject Start: 114 Subject End: 245 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg.............................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg.............................................................................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 8.0E-42 bit: 172.0 Len: 143 Query Start:186 Query End:328 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 516 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. .........................................................................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:186 Query End:315 Subject Strand: POSITIVE Subject Start: 200 Subject End: 329 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt............................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-40 bit: 167.0 Len: 148 Query Start:179 Query End:326 Subject Strand: POSITIVE Subject Start: 195 Subject End: 341 ..................................................................................................................................................................................ctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttg.................................................................................................................................................................................................................... ..................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg.................................................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 191 Query Start:185 Query End:375 Subject Strand: NEGATIVE Subject Start: 38 Subject End: 228 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacacc................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttacacc................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:185 Query End:315 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 241 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 144 Query Start:185 Query End:328 Subject Strand: POSITIVE Subject Start: 113 Subject End: 256 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 144 Query Start:185 Query End:328 Subject Strand: POSITIVE Subject Start: 10 Subject End: 153 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 7.0E-33 bit: 143.0 Len: 200 Query Start:174 Query End:373 Subject Strand: NEGATIVE Subject Start: 274 Subject End: 473 .............................................................................................................................................................................aatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttaca..................................................................................................................................................................... .............................................................................................................................................................................aatcgctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattaggctgttatgcgaaaatttttcttgtgaaaaatatttaca..................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 7.0E-33 bit: 143.0 Len: 144 Query Start:185 Query End:328 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 541 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgat.................................................................................................................................................................................................................. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 131 Query Start:185 Query End:315 Subject Strand: POSITIVE Subject Start: 141 Subject End: 271 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt............................................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 109 Query Start:186 Query End:294 Subject Strand: POSITIVE Subject Start: 257 Subject End: 365 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttg.................................................................................................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttg.................................................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 150 Query Start:179 Query End:328 Subject Strand: NEGATIVE Subject Start: 28 Subject End: 177 ..................................................................................................................................................................................ctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ..................................................................................................................................................................................ctttggttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgat.................................................................................................................................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 131 Query Start:185 Query End:315 Subject Strand: POSITIVE Subject Start: 155 Subject End: 285 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 139 Query Start:178 Query End:316 Subject Strand: POSITIVE Subject Start: 84 Subject End: 222 .................................................................................................................................................................................cctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg.............................................................................................................................................................................................................................. .................................................................................................................................................................................cctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.............................................................................................................................................................................................................................. Subject: pint_PI0191_PI0192|O-methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[181846,182270]|425 HSP 1 e-value: 3.0E-23 bit: 111.0 Len: 108 Query Start:221 Query End:328 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 276 ............................................................................................................................................................................................................................cgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ............................................................................................................................................................................................................................cgctttcgctttgcaatagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaacgcgctgat.................................................................................................................................................................................................................. Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 187 Query Start:187 Query End:373 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 390 ..........................................................................................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttaca..................................................................................................................................................................... ..........................................................................................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca..................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 150 Query Start:179 Query End:328 Subject Strand: POSITIVE Subject Start: 73 Subject End: 222 ..................................................................................................................................................................................ctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ..................................................................................................................................................................................ctttgcttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgat.................................................................................................................................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 205 Query Start:187 Query End:391 Subject Strand: POSITIVE Subject Start: 113 Subject End: 317 ..........................................................................................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttct................................................................................................................................................... ..........................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttct................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 189 Query Start:186 Query End:374 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 308 .........................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacac.................................................................................................................................................................... .........................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttacac.................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 144 Query Start:185 Query End:328 Subject Strand: NEGATIVE Subject Start: 334 Subject End: 477 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat.................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgat.................................................................................................................................................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 104 Query Start:224 Query End:327 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 ...............................................................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttga................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................tttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttga................................................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 150 Query Start:224 Query End:373 Subject Strand: POSITIVE Subject Start: 180 Subject End: 329 ...............................................................................................................................................................................................................................tttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttaca..................................................................................................................................................................... ...............................................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca..................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 134 Query Start:174 Query End:307 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 332 .............................................................................................................................................................................aatccctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaa....................................................................................................................................................................................................................................... .............................................................................................................................................................................aatcccttttgttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa....................................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 196 Query Start:188 Query End:383 Subject Strand: POSITIVE Subject Start: 190 Subject End: 385 ...........................................................................................................................................................................................tgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgc........................................................................................................................................................... ...........................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgc........................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 132 Query Start:185 Query End:316 Subject Strand: POSITIVE Subject Start: 144 Subject End: 275 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg.............................................................................................................................................................................................................................. ........................................................................................................................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg.............................................................................................................................................................................................................................. Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 9.0E-11 bit: 69.9 Len: 123 Query Start:185 Query End:307 Subject Strand: POSITIVE Subject Start: 226 Subject End: 348 ........................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaa....................................................................................................................................................................................................................................... ........................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa....................................................................................................................................................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 138 Query Start:178 Query End:315 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 311 .................................................................................................................................................................................cctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... .................................................................................................................................................................................cctttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggtttt............................................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 5.0E-9 bit: 63.9 Len: 168 Query Start:207 Query End:374 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 215 ..............................................................................................................................................................................................................aaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacac.................................................................................................................................................................... ..............................................................................................................................................................................................................aaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttacac.................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 137 Query Start:179 Query End:315 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 368 ..................................................................................................................................................................................ctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt............................................................................................................................................................................................................................... ..................................................................................................................................................................................ctttggttttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggtttt............................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUUCAGCAAAACAACAAAUACAGAAAAUCCCUUUCAGCACUUAGCGAAAGGGAUUUUUUAUAUACGUUCUGUUCGAGUAAGUAUAUACAAGAAUGGUGGCAAAAAAUCGUUUCAGCAGAGCUUUAAUAGUAGAACUAUUUUCUUUGUAUUACCGAAAGCCGUUACAAGAUAAUCCCUUUGUUUUUGUAAAGAUAAUUCUCUUAAAAAUUGAUAACUGCGCUUUGGCGUUGCGAAAGCGGCUCUUUUGUGCUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGCAAUGCGAAACAAUAGGUUUUGUAAGGCGUUGAUGAUUAGUUUGUUAUGCGAUAGGUAUUGUUGUGAAAAAUAUUUACACCAUUGUUGCCUUUUUCUACCUAUUGUAAUAAGGUGUAUAGGCGAAAUGGAGUAGGAGCAUAACCCCCUGAAAUGAAAACUUAGAGGAAUGUUGCAGGCAGGUGAAUCAUUGGAAAUAGAAAAAUAUUUCUUACUUUUGUAAGCGAUAUAAAAACAAUCUGUGCC ........(((.........(((.((((((((((((((.((.....)))))))))))))))).)))..((((((((...(((......)))..(((((((........))))))).))))))))........((((.((((((((..((..(((((....(((.......((((.(((((..(((((..(..((.............((((((((....(((((((.(((((((((((((((((.(((((..(.(.((((.......)))).).)..))))).)))))))))))))))))...((((......))))))))))).....))))))))(((((((..((((((((.........))))))))..(((((.((((((.....(((((.........)))))...))))))))))).......)))))))...))...)..)))))..)).))).))))...))).)))))..))..))))))))....(((((.(((((....))))).)))))........))))))). (-155.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGCACAGAUUGUUUUUAUAUCGCUUACAAAAGUAAGAAAUAUUUUUCUAUUUCCAAUGAUUCACCUGCCUGCAACAUUCCUCUAAGUUUUCAUUUCAGGGGGUUAUGCUCCUACUCCAUUUCGCCUAUACACCUUAUUACAAUAGGUAGAAAAAGGCAACAAUGGUGUAAAUAUUUUUCACAACAAUACCUAUCGCAUAACAAACUAAUCAUCAACGCCUUACAAAACCUAUUGUUUCGCAUUGCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAGCACAAAAGAGCCGCUUUCGCAACGCCAAAGCGCAGUUAUCAAUUUUUAAGAGAAUUAUCUUUACAAAAACAAAGGGAUUAUCUUGUAACGGCUUUCGGUAAUACAAAGAAAAUAGUUCUACUAUUAAAGCUCUGCUGAAACGAUUUUUUGCCACCAUUCUUGUAUAUACUUACUCGAACAGAACGUAUAUAAAAAAUCCCUUUCGCUAAGUGCUGAAAGGGAUUUUCUGUAUUUGUUGUUUUGCUGAAAUUA ((((.((((((((((..((..((((.....((((.(((.(((((((.((((.((.((((((.................(((((((((....)))).)))))(((((((...(((.(((((..((((....((((.........))))......))))...))))).)))..((((.........))))......))))))).....))))))....((((((((((((((.((((((.((.((((.(((((((((.(((((....((((((.(...).))))))....))))).))))))))).)))).)).......................(((((....)))))....)))))).))).))...)))))).)))....)).))))....))))))).)))))))....))))..))..))))))))))..))))....(((..(((......)))..)))(((((((.(((((.((((((((((((((.....)).)))))))))))).)))))....)))))))......... (-132.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 984 270 221 54 5 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 925 270 221 215 166 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 925 270 221 54 5 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 910 270 221 103 54 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 901 290 241 101 52 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 901 290 241 62 13 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 863 280 231 52 3 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 848 290 241 74 25 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 840 250 201 214 165 pint:PI0202|5end_DNA_helicase_191753..191983_POSITIVE 834 300 251 84 33 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 834 300 251 56 5 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 834 300 251 56 5 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 833 290 241 74 25 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 833 290 241 205 156 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 832 310 261 94 45 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 832 310 261 51 2 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 832 310 261 55 6 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 832 310 261 220 171 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 832 310 261 55 6 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 832 310 261 55 6 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 906 290 241 57 8 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 901 290 241 57 8 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 893 270 221 96 47 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 882 280 231 146 97 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 860 280 231 106 57 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 840 270 221 146 97 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 840 250 201 116 67 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 833 280 231 146 97 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 819 270 221 140 91 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 814 280 231 146 97 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 808 280 231 146 97 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 799 310 262 49 1 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 799 310 262 49 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 783 260 212 126 78 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 779 280 231 120 71 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 778 270 221 146 97 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 758 280 231 146 95 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 755 245 201 151 107 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 754 319 271 52 4 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 734 270 224 150 104 pint:PI1528|3end_hypothetical_protein_1449878..1450028_POSITIVE