Origin IGS: gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taattttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacacctttactatctttttcctccttatattatataggtctgaacctccacatcaggaagttcagacctaagtttatagaaggtaaaaagaatttcagctaacagccataatcctcctactacattttatttgtgccgatattcaacagaattttaaccgtttctttcgtctttctcgctcctttatactatctttgcataagataggcggcactcggcaaactaagagtaaactctctttgccctcgc Mask Tandem Repeat Region ================================================ gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Find is-nt database================================================ Query_seq: PI0787:PI0788|PI0787:PI0788:glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I):->->:725854..726291 438 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0787:PI0788|PI0787:PI0788:glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I):->->:725854..726291 438 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0787:PI0788|PI0787:PI0788:glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I):->->:725854..726291 438 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 254 End: 355 ............................................................................................................................................................................................................................................................. M F H T S I Y Y V T N C A S T C C K T Y C F A F Q K R L F C T V K A ................................................................................... Protein_Len: 51 Strand: + Start: 286 End: 438 ............................................................................................................................................................................................................................................................................................. M C I N V L Q N L L F C I P K A A V L H G K S V G F A L Q N S R F R N V K A Q L S L F K R I I F T K L Protein_Len: 30 Strand: - Start: 313 End: 402 ........................................................................................................................................................................................................................................................................................................................ Q K A N W F R S N Q V T F A Y T K R Q L V A A K A V D F R M .................................... Protein_Len: 47 Strand: - Start: 285 End: 425 ............................................................................................................................................................................................................................................................................................ S H M L T N C F R N N Q M G F A A T K C P L L T P K A N C F L R K R L T L A C N D S K L L I M ............. Protein_Len: 32 Strand: - Start: 182 End: 277 ..................................................................................................................................................................................... T Q V E Q H P P E S R Y L I L L F F I T F T Y I N K V R T D I M ................................................................................................................................................................. Protein_Len: 35 Strand: - Start: 151 End: 255 ...................................................................................................................................................... S F N K K G E I F K P R F K R I H L N L G I Y Y L S S F S L L P T F M ....................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 2 End: 142 . S P L S L K S K T Q R T G G I K H L S L I F S R S L R F F R N F N Q Q I D A C I F H L L L I M ........................................................................................................................................................................................................................................................................................................ gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -10.1 Tail_Score: -3.86897 Start: 178 End: 217 Full_Region: ttcctccttatatta tataggtctgaacctcc acatca ggaagttcagacctaag tttatagaaggtaaa .................................................................................................................................................................................tataggtctgaacctccacatcaggaagttcagacctaag............................................................................................................................................................................................................................. TransTerm Strand: - Conf: 82 HP_score: -11.4 Tail_Score: -2.91924 Start: 179 End: 216 Full_Region: tcctccttatattat ataggtctgaacctcc acatca ggaagttcagacctaa gtttatagaaggtaa ..................................................................................................................................................................................ataggtctgaacctccacatcaggaagttcagacctaa.............................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -17.1 Tail_Score: -2.85351 Start: 180 End: 215 Full_Region: TACCTTCTATAAACT TAGGTCTGAACTTCC TGATGT GGAGGTTCAGACCTA TATAATATAAGGAGG ...................................................................................................................................................................................TAGGTCTGAACTTCCTGATGTGGAGGTTCAGACCTA............................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.3 Tail_Score: -2.97747 Start: 182 End: 213 Full_Region: CCTTCTATAAACTTA GGTCTGAACTTCC TGATGT GGAGGTTCAGACC TATATAATATAAGGA .....................................................................................................................................................................................GGTCTGAACTTCCTGATGTGGAGGTTCAGACC................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 91 HP_score: -13.1 Tail_Score: -2.70354 Start: 182 End: 213 Full_Region: tccttatattatata ggtctgaacctcc acatca ggaagttcagacc taagtttatagaagg .....................................................................................................................................................................................ggtctgaacctccacatcaggaagttcagacc................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 47 HP_score: -3.9 Tail_Score: -3.00173 Start: 246 End: 264 Full_Region: acataatagatactc gtgtgaa aaata tttacac ctttactatcttttt .....................................................................................................................................................................................................................................................gtgtgaaaaatatttacac.............................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -19.2 Tail_Score: -3.54424 Start: 331 End: 381 Full_Region: TTTTGCATTCCAAAA GCGGCTGTTTTGCACGGTAAAAGC GTA GGTTTTGCGTTGCAAAACAGCCGC TTTCGCAACGTCAAA ..........................................................................................................................................................................................................................................................................................................................................GCGGCTGTTTTGCACGGTAAAAGCGTAGGTTTTGCGTTGCAAAACAGCCGC......................................................... TransTerm Strand: - Conf: 100 HP_score: -17.0 Tail_Score: -4.13767 Start: 331 End: 381 Full_Region: tttgacgttgcgaaa gcggctgttttgcaacgcaaaacc tac gcttttaccgtgcaaaacagccgc ttttggaatgcaaaa ..........................................................................................................................................................................................................................................................................................................................................gcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgc......................................................... Find igs database================================================ Query_seq: PI0787:PI0788|PI0787:PI0788:glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I):->->:725854..726291 438 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Intra-Species Hit: Count: 51 Min: 1 Max: 438 Len: 438 Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 0.0 bit: 868.0 Len: 438 Query Start:1 Query End:438 Subject Strand: POSITIVE Subject Start: 1 Subject End: 438 gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta gcgagggcaaagagagtttactcttagtttgccgagtgccgcctatcttatgcaaagatagtataaaggagcgagaaagacgaaagaaacggttaaaattctgttgaatatcggcacaaataaaatgtagtaggaggattatggctgttagctgaaattctttttaccttctataaacttaggtctgaacttcctgatgtggaggttcagacctatataatataaggaggaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-63 bit: 244.0 Len: 191 Query Start:246 Query End:436 Subject Strand: NEGATIVE Subject Start: 100 Subject End: 290 .....................................................................................................................................................................................................................................................gtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. .....................................................................................................................................................................................................................................................gtgtaaatatttttcacaggcataactattgtgtaacttacttgttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttactaaat.. Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-61 bit: 236.0 Len: 195 Query Start:241 Query End:435 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 244 ................................................................................................................................................................................................................................................taaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ................................................................................................................................................................................................................................................taaaagtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 189 Query Start:246 Query End:434 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 248 .....................................................................................................................................................................................................................................................gtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... .....................................................................................................................................................................................................................................................gtgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa.... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 8.0E-57 bit: 222.0 Len: 144 Query Start:292 Query End:435 Subject Strand: POSITIVE Subject Start: 98 Subject End: 241 ...................................................................................................................................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...................................................................................................................................................................................................................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 3.0E-56 bit: 220.0 Len: 135 Query Start:301 Query End:435 Subject Strand: POSITIVE Subject Start: 94 Subject End: 228 ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 5.0E-55 bit: 216.0 Len: 189 Query Start:247 Query End:435 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 334 ......................................................................................................................................................................................................................................................tgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ......................................................................................................................................................................................................................................................tgtaaatatttttcgcaggtgtaactgttgtgtaacttgctatgcttcaatgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaa... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 132 Query Start:304 Query End:435 Subject Strand: POSITIVE Subject Start: 151 Subject End: 282 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 8.0E-54 bit: 212.0 Len: 195 Query Start:241 Query End:435 Subject Strand: POSITIVE Subject Start: 31 Subject End: 225 ................................................................................................................................................................................................................................................taaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ................................................................................................................................................................................................................................................taaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 8.0E-54 bit: 212.0 Len: 131 Query Start:304 Query End:434 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 345 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa.... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 134 Query Start:305 Query End:438 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 241 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaatta Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 137 Query Start:298 Query End:434 Subject Strand: POSITIVE Subject Start: 248 Subject End: 384 .........................................................................................................................................................................................................................................................................................................gtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... .........................................................................................................................................................................................................................................................................................................gtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa.... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 201 Query Start:234 Query End:434 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 680 .........................................................................................................................................................................................................................................aagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... .........................................................................................................................................................................................................................................aagataataaatatgtaaatatttttcgcaagtataactgttatataacttattatgtatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa.... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 136 Query Start:300 Query End:435 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 249 ...........................................................................................................................................................................................................................................................................................................gttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...........................................................................................................................................................................................................................................................................................................gttgcaaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaa... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 132 Query Start:304 Query End:435 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 297 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaa... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 136 Query Start:299 Query End:434 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 284 ..........................................................................................................................................................................................................................................................................................................tgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ..........................................................................................................................................................................................................................................................................................................tgttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa.... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 5.0E-49 bit: 196.0 Len: 143 Query Start:293 Query End:435 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 233 ....................................................................................................................................................................................................................................................................................................tcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ....................................................................................................................................................................................................................................................................................................tcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 5.0E-49 bit: 196.0 Len: 135 Query Start:304 Query End:438 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 299 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaagatta Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 5.0E-49 bit: 196.0 Len: 135 Query Start:301 Query End:435 Subject Strand: POSITIVE Subject Start: 93 Subject End: 227 ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 130 Query Start:305 Query End:434 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa.... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 145 Query Start:291 Query End:435 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 329 ..................................................................................................................................................................................................................................................................................................catcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ..................................................................................................................................................................................................................................................................................................catcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 135 Query Start:304 Query End:438 Subject Strand: POSITIVE Subject Start: 696 Subject End: 830 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaatta Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 127 Query Start:308 Query End:434 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 436 ...................................................................................................................................................................................................................................................................................................................acctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ...................................................................................................................................................................................................................................................................................................................acctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa.... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 190 Query Start:247 Query End:436 Subject Strand: NEGATIVE Subject Start: 154 Subject End: 343 ......................................................................................................................................................................................................................................................tgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. ......................................................................................................................................................................................................................................................tgtaaatatttttcacaagtgtgtctattgtgtaactatctcatcaccaatgcattataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaat.. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 132 Query Start:305 Query End:436 Subject Strand: NEGATIVE Subject Start: 140 Subject End: 271 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 144 Query Start:292 Query End:435 Subject Strand: POSITIVE Subject Start: 398 Subject End: 541 ...................................................................................................................................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...................................................................................................................................................................................................................................................................................................atcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaa... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 150 Query Start:247 Query End:396 Subject Strand: POSITIVE Subject Start: 30 Subject End: 179 ......................................................................................................................................................................................................................................................tgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaa.......................................... ......................................................................................................................................................................................................................................................tgtaaatatttttcacaagagtatctcttgtgtaatcgtcttgttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaa.......................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:304 Query End:435 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 331 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaa-cagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 131 Query Start:304 Query End:434 Subject Strand: POSITIVE Subject Start: 386 Subject End: 516 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa.... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 132 Query Start:304 Query End:435 Subject Strand: POSITIVE Subject Start: 40 Subject End: 171 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaa... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 132 Query Start:304 Query End:435 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 141 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaa... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 134 Query Start:301 Query End:434 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 390 ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ............................................................................................................................................................................................................................................................................................................ttgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa.... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 132 Query Start:304 Query End:435 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 244 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaa... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 191 Query Start:242 Query End:432 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 380 .................................................................................................................................................................................................................................................aaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttaca...... .................................................................................................................................................................................................................................................aaagatgtaaatatttttcacaagggaaactattgcataactatctatacatcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca...... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 106 Query Start:291 Query End:396 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 213 ..................................................................................................................................................................................................................................................................................................catcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaa.......................................... ..................................................................................................................................................................................................................................................................................................catcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa.......................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 132 Query Start:304 Query End:435 Subject Strand: POSITIVE Subject Start: 331 Subject End: 462 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaa... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 143 Query Start:292 Query End:434 Subject Strand: POSITIVE Subject Start: 166 Subject End: 308 ...................................................................................................................................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaa.... ...................................................................................................................................................................................................................................................................................................atcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa.... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:350 Query End:384 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 258 .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................... .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt...................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 145 Query Start:292 Query End:436 Subject Strand: POSITIVE Subject Start: 334 Subject End: 478 ...................................................................................................................................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. ...................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaat.. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 204 Query Start:230 Query End:433 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 316 .....................................................................................................................................................................................................................................gaaaaagatagtaaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaa..... .....................................................................................................................................................................................................................................gaaaaagacaataaagctgtaaatatttttcacaagagtacctatcgtataactacctcatcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa..... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 133 Query Start:304 Query End:436 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 322 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat.. ...............................................................................................................................................................................................................................................................................................................caaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaat.. Subject: pint_PI1099_PI1100|low molecular weight protein-tyrosine-phosphatase:conserved hypothetical protein; possible rhodanese-domain protein|POSITIVE:POSITIVE|[1023697,1024049]|353 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 77 Query Start:359 Query End:435 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 180 ......................................................................................................................................................................................................................................................................................................................................................................gttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ......................................................................................................................................................................................................................................................................................................................................................................gttttgcgttgcaaaagagccgctttcgcaacgtcaaaacgcagttatcactttttaagggaattatctttacaaaa... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 85 Query Start:247 Query End:331 Subject Strand: NEGATIVE Subject Start: 164 Subject End: 248 ......................................................................................................................................................................................................................................................tgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaag........................................................................................................... ......................................................................................................................................................................................................................................................tgtaaatatttttcacaagggtatctattgtataactgcctgtttatcaataacttgcaaaacctattgttttgcgttgcaaaag........................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 9.0E-26 bit: 119.0 Len: 132 Query Start:304 Query End:435 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 210 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 123 Query Start:313 Query End:435 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 348 ........................................................................................................................................................................................................................................................................................................................ttgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ........................................................................................................................................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa... Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 102 Query Start:337 Query End:438 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 259 ................................................................................................................................................................................................................................................................................................................................................gttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ................................................................................................................................................................................................................................................................................................................................................gttttacacagtaaaagcggctgttttgcgatgcaaaatagccgcttttgcaatgccaaagcgcagttatcactttttaagagaattatctttacaagatta Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 190 Query Start:246 Query End:435 Subject Strand: POSITIVE Subject Start: 132 Subject End: 321 .....................................................................................................................................................................................................................................................gtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... .....................................................................................................................................................................................................................................................gtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:350 Query End:384 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 270 .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................... .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 134 Query Start:305 Query End:438 Subject Strand: NEGATIVE Subject Start: 738 Subject End: 871 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaattatcatttttcttgcgaactttctttacaaaatta Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 135 Query Start:304 Query End:438 Subject Strand: POSITIVE Subject Start: 261 Subject End: 395 ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta ...............................................................................................................................................................................................................................................................................................................caaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatatta Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 135 Query Start:301 Query End:435 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 278 ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ............................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaa... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 35 Query Start:350 Query End:384 Subject Strand: POSITIVE Subject Start: 195 Subject End: 229 .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................... .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 133 Query Start:305 Query End:437 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 312 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatt. ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaatt. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:305 Query End:435 Subject Strand: POSITIVE Subject Start: 179 Subject End: 309 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:305 Query End:435 Subject Strand: POSITIVE Subject Start: 233 Subject End: 362 ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa... ................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaaa... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:350 Query End:384 Subject Strand: NEGATIVE Subject Start: 278 Subject End: 312 .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................... .............................................................................................................................................................................................................................................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt...................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCGAGGGCAAAGAGAGUUUACUCUUAGUUUGCCGAGUGCCGCCUAUCUUAUGCAAAGAUAGUAUAAAGGAGCGAGAAAGACGAAAGAAACGGUUAAAAUUCUGUUGAAUAUCGGCACAAAUAAAAUGUAGUAGGAGGAUUAUGGCUGUUAGCUGAAAUUCUUUUUACCUUCUAUAAACUUAGGUCUGAACUUCCUGAUGUGGAGGUUCAGACCUAUAUAAUAUAAGGAGGAAAAAGAUAGUAAAGGUGUAAAUAUUUUUCACACGAGUAUCUAUUAUGUAACUAACUGUGCAUCAACGUGUUGCAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAACAGCCGCUUUCGCAACGUCAAAGCGCAGUUAUCACUUUUUAAGAGAAUUAUCUUUACAAAAUUA (((..(((((((((((....)))))..))))))..((((((.(((((((.....)))))))...................(....).(((((........)))))......))))))........)))...(((((((((.((((.....)))).)))))))))..(((((((((....(((((((((((((((......))))))))))))))).....))).))))))..((((((((((((((((............(((..(.......)..)))...(((((((((.(..((((..((((((((.....)))))))).....(((((((((((((((((((...(((((....))))).)).)))))))))))))))))....))))..).))))))))).))))))).......)))))))))......... (-142.71) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUUUGUAAAGAUAAUUCUCUUAAAAAGUGAUAACUGCGCUUUGACGUUGCGAAAGCGGCUGUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUGCAACACGUUGAUGCACAGUUAGUUACAUAAUAGAUACUCGUGUGAAAAAUAUUUACACCUUUACUAUCUUUUUCCUCCUUAUAUUAUAUAGGUCUGAACCUCCACAUCAGGAAGUUCAGACCUAAGUUUAUAGAAGGUAAAAAGAAUUUCAGCUAACAGCCAUAAUCCUCCUACUACAUUUUAUUUGUGCCGAUAUUCAACAGAAUUUUAACCGUUUCUUUCGUCUUUCUCGCUCCUUUAUACUAUCUUUGCAUAAGAUAGGCGGCACUCGGCAAACUAAGAGUAAACUCUCUUUGCCCUCGC .......((((((................((((((((((.((.(..((((..(((((((((((((((((((.((.((((.......))))..)))))))))))))))))))))...((((((((.....))))))))..))))..).)).))))).))))).............(((((((.....)))))))))))))..((((((((((..(((((..((.(((((((((((.(((......))).))))))))))).)).))))).))).)))))))......((.....))..........................((((((..((((....))))....................................(((((((.....))))))).))))))..((((((...((((....)))).))))))..... (-132.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 994 380 331 209 160 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 974 380 331 72 23 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 949 370 321 226 177 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 928 370 321 199 150 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 927 389 341 63 15 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 922 380 331 76 27 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 922 380 331 168 119 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 922 380 331 55 6 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 922 380 331 116 67 pint:PI0978|5end_hypothetical_protein_904867..905097_POSITIVE 894 360 311 203 154 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 894 360 311 96 47 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 894 400 351 77 28 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 892 410 361 214 166 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 888 379 331 222 174 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 887 400 351 53 4 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 876 370 321 213 164 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 875 360 311 96 47 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 848 400 351 50 1 pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE 844 380 331 76 27 pint:PI0322|5end_hypothetical_protein_303508..303738_POSITIVE 838 360 311 229 180 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 948 370 321 148 99 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 928 370 321 148 99 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 908 370 321 148 99 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 894 360 311 150 101 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 894 360 311 150 101 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 894 360 311 150 101 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 894 360 311 150 101 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 894 360 311 89 40 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 894 360 311 150 101 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 875 360 311 150 101 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 838 360 311 138 89 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 838 360 311 62 13 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 834 360 311 150 101 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 831 378 331 151 104 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 818 360 311 150 101 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 812 370 323 148 101 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 798 370 321 148 99 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 757 370 321 148 99 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 740 408 361 137 90 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 708 389 341 140 92 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE