Origin IGS: tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacaaggttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgataacaaggttgttaagcgttggatatgcttacgaaaaatatttacagctttattgcagtttttcgtctatatagcaagttctttctgctaaatttcta Mask Tandem Repeat Region ================================================ tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Find is-nt database================================================ Query_seq: PI0770:PI0771|PI0770:PI0771:hypothetical protein:conserved hypothetical protein:->->:706415..706663 249 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0770:PI0771|PI0770:PI0771:hypothetical protein:conserved hypothetical protein:->->:706415..706663 249 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0770:PI0771|PI0770:PI0771:hypothetical protein:conserved hypothetical protein:->->:706415..706663 249 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 60 End: 161 ........................................................... M F R K H I Q R L T T L L S M C Y K T Y C F A F Q K R L F C T V K A ........................................................................................ Protein_Len: 43 Strand: + Start: 119 End: 247 ...................................................................................................................... M F C I P K A A V L H G K S V G F A L Q K S R F R N V K A Q L S L F N G I I F T K P C .. Protein_Len: 30 Strand: - Start: 119 End: 208 ...................................................................................................................... Q K A N W F R S N Q V T F A Y T K R Q L L A A K A V D F R M ......................................... Protein_Len: 60 Strand: - Start: 28 End: 231 ........................... Q L Y K E Y A Y G V S L L R T I L T N Y F R N N Q M G F A A T K C P L L T P K A N C F L R K R L T L A C N D S K L P I M .................. Protein_Len: 31 Strand: - Start: 11 End: 103 .......... C F S S A I Y V F F Q L L A T F I K R L C I W R K V V K N D M .................................................................................................................................................. tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -13.4 Tail_Score: -3.54424 Start: 137 End: 187 Full_Region: TTTTGCATTCCAAAA GCGGCTGTTTTGCACGGTAAAAGC GTA GGTTTTGCGTTGCAAAAGAGCCGC TTTCGCAACGTCAAA ........................................................................................................................................GCGGCTGTTTTGCACGGTAAAAGCGTAGGTTTTGCGTTGCAAAAGAGCCGC.............................................................. TransTerm Strand: - Conf: 86 HP_score: -11.2 Tail_Score: -4.13767 Start: 137 End: 187 Full_Region: tttgacgttgcgaaa gcggctcttttgcaacgcaaaacc tac gcttttaccgtgcaaaacagccgc ttttggaatgcaaaa ........................................................................................................................................gcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgc.............................................................. TransTerm Strand: + Conf: 44 HP_score: -3.4 Tail_Score: -2.72973 Start: 162 End: 207 Full_Region: TGCACGGTAAAAGCG TAGGTTTTGCGTTGCAAAAG AGCCG CTTTCGCAACGTCAAAGCGCA GTTATCGCTTTTTAA .................................................................................................................................................................TAGGTTTTGCGTTGCAAAAGAGCCGCTTTCGCAACGTCAAAGCGCA.......................................... Find igs database================================================ Query_seq: PI0770:PI0771|PI0770:PI0771:hypothetical protein:conserved hypothetical protein:->->:706415..706663 249 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Intra-Species Hit: Count: 52 Min: 1 Max: 249 Len: 249 Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-139 bit: 494.0 Len: 249 Query Start:1 Query End:249 Subject Strand: POSITIVE Subject Start: 1 Subject End: 249 tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta tagaaatttagcagaaagaacttgctatatagacgaaaaactgcaataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaaccttgtta Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-57 bit: 224.0 Len: 145 Query Start:96 Query End:240 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 204 ...............................................................................................ttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... ...............................................................................................ttatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa......... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 4.0E-57 bit: 222.0 Len: 144 Query Start:98 Query End:241 Subject Strand: POSITIVE Subject Start: 292 Subject End: 435 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ .................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa........ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 4.0E-57 bit: 222.0 Len: 132 Query Start:111 Query End:242 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 180 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaac....... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-54 bit: 214.0 Len: 112 Query Start:111 Query End:222 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 231 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaa........................... ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa........................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 4.0E-54 bit: 212.0 Len: 135 Query Start:106 Query End:240 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 334 .........................................................................................................gttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... .........................................................................................................gttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa......... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-52 bit: 206.0 Len: 136 Query Start:105 Query End:240 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 284 ........................................................................................................tgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... ........................................................................................................tgttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa......... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-52 bit: 206.0 Len: 132 Query Start:111 Query End:242 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 244 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaac....... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 135 Query Start:107 Query End:241 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 245 ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..........................................................................................................ttataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa........ Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 129 Query Start:111 Query End:239 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 298 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaa.......... ..............................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa.......... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 130 Query Start:111 Query End:240 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 609 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa......... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-48 bit: 192.0 Len: 149 Query Start:92 Query End:240 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 458 ...........................................................................................cttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... ...........................................................................................cttgttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa......... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 144 Query Start:98 Query End:241 Subject Strand: POSITIVE Subject Start: 82 Subject End: 225 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ .................................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa........ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 132 Query Start:111 Query End:242 Subject Strand: POSITIVE Subject Start: 98 Subject End: 229 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac....... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 6.0E-47 bit: 188.0 Len: 143 Query Start:98 Query End:240 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 357 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... .................................................................................................atcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa......... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 6.0E-47 bit: 188.0 Len: 131 Query Start:111 Query End:241 Subject Strand: POSITIVE Subject Start: 152 Subject End: 282 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..............................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa........ Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 6.0E-47 bit: 188.0 Len: 131 Query Start:111 Query End:241 Subject Strand: POSITIVE Subject Start: 697 Subject End: 827 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..............................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa........ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:98 Query End:202 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 212 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa............................................... .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa............................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 135 Query Start:107 Query End:241 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 289 ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgcttt-ttaacggaattatttttacaaaa........ ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaa........ Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 148 Query Start:96 Query End:243 Subject Strand: POSITIVE Subject Start: 26 Subject End: 173 ...............................................................................................ttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ...............................................................................................ttatcaatgctttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaacc...... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 132 Query Start:111 Query End:242 Subject Strand: POSITIVE Subject Start: 97 Subject End: 228 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac....... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-44 bit: 180.0 Len: 147 Query Start:97 Query End:243 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 359 ................................................................................................tatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ................................................................................................tatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaacc...... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 9.0E-43 bit: 174.0 Len: 144 Query Start:99 Query End:242 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 288 ..................................................................................................tcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..................................................................................................tcaatgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaac....... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 9.0E-43 bit: 174.0 Len: 132 Query Start:111 Query End:242 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 140 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaac....... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 119 Query Start:122 Query End:240 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 375 .........................................................................................................................ttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... .........................................................................................................................ttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa......... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 143 Query Start:98 Query End:240 Subject Strand: POSITIVE Subject Start: 242 Subject End: 384 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... .................................................................................................atcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa......... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 111 Query Start:92 Query End:202 Subject Strand: POSITIVE Subject Start: 69 Subject End: 179 ...........................................................................................cttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa............................................... ...........................................................................................cttgttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaa............................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 132 Query Start:111 Query End:242 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 296 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaac....... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 138 Query Start:106 Query End:243 Subject Strand: POSITIVE Subject Start: 327 Subject End: 464 .........................................................................................................gttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgcttt-ttaacggaattatttttacaaaacc...... .........................................................................................................gttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaacc...... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 135 Query Start:107 Query End:241 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 275 ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..........................................................................................................ttataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa........ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 147 Query Start:97 Query End:243 Subject Strand: POSITIVE Subject Start: 397 Subject End: 543 ................................................................................................tatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ................................................................................................tatcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaacc...... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 131 Query Start:111 Query End:241 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 221 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..............................................................................................................aaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa........ Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 131 Query Start:111 Query End:241 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 315 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..............................................................................................................aaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa........ Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 141 Query Start:98 Query End:238 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 330 .................................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttaca........... .................................................................................................atcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca........... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 133 Query Start:111 Query End:243 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 218 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ..............................................................................................................aaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcagtgtcaaatcgaaattaccgttttccgtcggaattatctttacaaaacc...... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 130 Query Start:111 Query End:240 Subject Strand: POSITIVE Subject Start: 387 Subject End: 516 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa......... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 196 Query Start:44 Query End:239 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 308 ...........................................caataaagctgtaaatatttttcgtaagcatatccaacgcttaacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaa.......... ...........................................caataaagctgtaaatatttttcacaagagtacctatcgtataactacctcatcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa.......... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-32 bit: 141.0 Len: 131 Query Start:110 Query End:240 Subject Strand: POSITIVE Subject Start: 178 Subject End: 308 .............................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaa......... .............................................................................................................taaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa......... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 145 Query Start:97 Query End:241 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 370 ................................................................................................tatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ................................................................................................tatcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa........ Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 133 Query Start:111 Query End:243 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 330 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ..............................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaac-agccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaacc...... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 3.0E-27 bit: 123.0 Len: 150 Query Start:92 Query End:241 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 340 ...........................................................................................cttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ...........................................................................................cttgttgtcaatgcattacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa........ Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 132 Query Start:111 Query End:242 Subject Strand: POSITIVE Subject Start: 57 Subject End: 188 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... ..............................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac....... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 5.0E-23 bit: 109.0 Len: 131 Query Start:111 Query End:241 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 209 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..............................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa........ Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 7.0E-22 bit: 105.0 Len: 113 Query Start:111 Query End:223 Subject Strand: POSITIVE Subject Start: 347 Subject End: 459 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaac.......................... ..............................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac.......................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 135 Query Start:107 Query End:241 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 248 ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgta-ggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa........ ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaa-catacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaa........ HSP 2 e-value: 4.0E-17 bit: 89.7 Len: 57 Query Start:134 Query End:190 Subject Strand: POSITIVE Subject Start: 165 Subject End: 221 .....................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgcttt........................................................... .....................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt........................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 139 Query Start:104 Query End:242 Subject Strand: POSITIVE Subject Start: 184 Subject End: 322 .......................................................................................................gtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac....... .......................................................................................................gtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac....... HSP 2 e-value: 4.0E-11 bit: 69.9 Len: 35 Query Start:156 Query End:190 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 270 ...........................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt........................................................... ...........................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt........................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 129 Query Start:111 Query End:239 Subject Strand: POSITIVE Subject Start: 262 Subject End: 390 ..............................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaa.......... ..............................................................................................................aaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa.......... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 137 Query Start:107 Query End:243 Subject Strand: POSITIVE Subject Start: 229 Subject End: 364 ..........................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... ..........................................................................................................ttataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcg-tttttcaatgaattatctttacaaaacc...... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 122 Query Start:115 Query End:236 Subject Strand: NEGATIVE Subject Start: 507 Subject End: 628 ..................................................................................................................cctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattattttta............. ..................................................................................................................cctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta............. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 118 Query Start:85 Query End:202 Subject Strand: POSITIVE Subject Start: 60 Subject End: 177 ....................................................................................taacaaccttgttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa............................................... ....................................................................................taacaaactcgttatcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaa............................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:156 Query End:190 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 165 ...........................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt........................................................... ...........................................................................................................................................................aaagcgtaggttttgcaatgcaaaagagccgcttt........................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 4.0E-11 bit: 69.9 Len: 107 Query Start:96 Query End:202 Subject Strand: POSITIVE Subject Start: 401 Subject End: 507 ...............................................................................................ttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa............................................... ...............................................................................................ttatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa............................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 134 Query Start:110 Query End:243 Subject Strand: POSITIVE Subject Start: 178 Subject End: 311 .............................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaacc...... .............................................................................................................taaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaacc...... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 36 Query Start:155 Query End:190 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 259 ..........................................................................................................................................................aaaagcgtaggttttgcgttgcaaaagagccgcttt........................................................... ..........................................................................................................................................................aaaagcgtaggttttgcaatgcaaaagagccgcttt........................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAAAUUUAGCAGAAAGAACUUGCUAUAUAGACGAAAAACUGCAAUAAAGCUGUAAAUAUUUUUCGUAAGCAUAUCCAACGCUUAACAACCUUGUUAUCAAUGUGUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAAGAGCCGCUUUCGCAACGUCAAAGCGCAGUUAUCGCUUUUUAACGGAAUUAUUUUUACAAAACCUUGUUA ........((((((.......))))))....(((((......((......)).(((((....((((((((((......(((((.(((((....))))).....)))))............(((((((.((.(.(((((((((.(((((((((...(((((....))))).)).))))))).))))))))).).)).).)))))).........))))....)))))).....)))))......))))). (-59.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACAAGGUUUUGUAAAAAUAAUUCCGUUAAAAAGCGAUAACUGCGCUUUGACGUUGCGAAAGCGGCUCUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAACACAUUGAUAACAAGGUUGUUAAGCGUUGGAUAUGCUUACGAAAAAUAUUUACAGCUUUAUUGCAGUUUUUCGUCUAUAUAGCAAGUUCUUUCUGCUAAAUUUCUA ......((..((((....))))..))........((((.((((((..((((.((((.(((((((((((.(((((((.((.((((.......))))..))))))))).))))))))))).)))))))).((((..(((....)))..)))).....(((((((((((((((.....)))))))............))))))))...))))))..)))).....(((((.(......))))))........ (-66.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 932 190 141 80 31 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 932 190 141 172 123 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 932 190 141 59 10 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 927 180 131 230 181 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 927 180 131 203 154 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 912 190 141 213 164 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 907 180 131 66 17 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 903 190 141 227 178 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 898 170 121 207 158 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 898 170 121 100 51 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 897 210 161 54 5 pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE 879 170 121 100 51 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 860 190 144 227 181 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 858 180 134 110 64 pint:PI0978|5end_hypothetical_protein_904867..905097_POSITIVE 854 190 141 80 31 pint:PI0322|5end_hypothetical_protein_303508..303738_POSITIVE 842 170 121 187 138 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 828 220 171 52 3 pint:PI1041|5end_hypothetical_protein_960443..960673_POSITIVE 823 190 141 61 12 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 818 180 131 51 2 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 811 220 171 218 170 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 918 179 131 151 103 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 898 170 121 93 44 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 898 170 121 142 93 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 878 170 121 142 93 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 860 160 111 144 95 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 860 160 111 144 95 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 860 160 111 144 95 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 860 160 111 144 95 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 860 160 111 144 95 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 842 170 121 142 93 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 842 170 121 66 17 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 841 160 111 144 95 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 831 180 131 147 98 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 822 179 131 151 103 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 800 160 111 144 95 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 784 160 111 144 95 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 773 210 161 50 1 pint:PI0574|3end_hypothetical_protein_519444..519594_POSITIVE 768 170 121 142 93 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 743 179 133 151 105 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 724 160 111 83 34 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE