Origin IGS: taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacacccacataacaatattttaaatacgcttcgctatcagtataggctacgctgaatacaatagaagtttagctgatataactcattttatggtcaaaaagacagcaataaggctgtaaatatttttcacaagcacaccaatcgtataacttactcgctgtcaatgcgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaacaaaggctttttcaagcagttatcacaaaatataaaggtgtgccaaaattgacttttgacacaccatttctaaagatactaaattttctaaatatagtacaatataaatatta Mask Tandem Repeat Region ================================================ taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Find is-nt database================================================ Query_seq: PI0680:PI0682|PI0680:PI0682:hypothetical protein:hypothetical protein:->->:618694..619111 418 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0680:PI0682|PI0680:PI0682:hypothetical protein:hypothetical protein:->->:618694..619111 418 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0680:PI0682|PI0680:PI0682:hypothetical protein:hypothetical protein:->->:618694..619111 418 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 147 End: 236 .................................................................................................................................................. M R F D I A K A A L L R C K T Y A F S V Q N S R F W N A K Q ...................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 124 End: 345 ........................................................................................................................... M I L L K S D N C A L T L R K R L F C D A K P T L L A C K T A A F G M Q N N R F C N A L T A S K L Y D W C A C E K Y L Q ......................................................................... Protein_Len: 31 Strand: - Start: 301 End: 393 ............................................................................................................................................................................................................................................................................................................ L R I A T K K V M F H T I D A L S R N Y E A Y G I S I A F R M ......................... Protein_Len: 34 Strand: - Start: 194 End: 295 ................................................................................................................................................................................................. A K L T C F L R K Q F A F C Y T K C R M S L S Y T I R N T H K H F M ........................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 248 .. P V G K Y K T I V A Q F L R Q K T F I I R N F L S L Q A K V N R F R S K Q S A F G V S K A H L V A A K P I C F L L N Q M .......................................................................................................................................................................... taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -6.9 Tail_Score: -3.88291 Start: 48 End: 78 Full_Region: tatcacaaaatataa aggtgtgccaaaa ttgac ttttgacacacca tttctaaagatacta ...............................................aggtgtgccaaaattgacttttgacacacca.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -12.6 Tail_Score: -4.52142 Start: 49 End: 77 Full_Region: AGTATCTTTAGAAAT GGTGTGTCAAAA GTCAA TTTTGGCACACC TTTATATTTTGTGAT ................................................GGTGTGTCAAAAGTCAATTTTGGCACACC..................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -10.4 Tail_Score: -2.92653 Start: 49 End: 77 Full_Region: atcacaaaatataaa ggtgtgccaaaa ttgac ttttgacacacc atttctaaagatact ................................................ggtgtgccaaaattgacttttgacacacc..................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -10.7 Tail_Score: -4.13767 Start: 168 End: 218 Full_Region: TTTGACATTGCGAAA GCGGCTCTTTTGCGATGCAAAACC TAC GCTTTTAGCGTGCAAAACAGCCGC TTTTGGAATGCAAAA .......................................................................................................................................................................GCGGCTCTTTTGCGATGCAAAACCTACGCTTTTAGCGTGCAAAACAGCCGC........................................................................................................................................................................................................ TransTerm Strand: - Conf: 77 HP_score: -8.5 Tail_Score: -3.59262 Start: 168 End: 218 Full_Region: ttttgcattccaaaa gcggctgttttgcacgctaaaagc gta ggttttgcatcgcaaaagagccgc tttcgcaatgtcaaa .......................................................................................................................................................................gcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgc........................................................................................................................................................................................................ Find igs database================================================ Query_seq: PI0680:PI0682|PI0680:PI0682:hypothetical protein:hypothetical protein:->->:618694..619111 418 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Intra-Species Hit: Count: 49 Min: 1 Max: 418 Len: 418 Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 0.0 bit: 829.0 Len: 418 Query Start:1 Query End:418 Subject Strand: POSITIVE Subject Start: 1 Subject End: 418 taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta taatatttatattgtactatatttagaaaatttagtatctttagaaatggtgtgtcaaaagtcaattttggcacacctttatattttgtgataactgcttgaaaaagcctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattgctgtctttttgaccataaaatgagttatatcagctaaacttctattgtattcagcgtagcctatactgatagcgaagcgtatttaaaatattgttatgtgggtgtta Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 8.0E-57 bit: 222.0 Len: 148 Query Start:109 Query End:256 Subject Strand: POSITIVE Subject Start: 54 Subject End: 201 ............................................................................................................ctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattga.................................................................................................................................................................. ............................................................................................................ctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattga.................................................................................................................................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 8.0E-57 bit: 222.0 Len: 144 Query Start:113 Query End:256 Subject Strand: NEGATIVE Subject Start: 85 Subject End: 228 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattga.................................................................................................................................................................. ................................................................................................................gttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattga.................................................................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-56 bit: 220.0 Len: 131 Query Start:115 Query End:245 Subject Strand: POSITIVE Subject Start: 480 Subject End: 610 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 5.0E-55 bit: 216.0 Len: 193 Query Start:110 Query End:302 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 232 .............................................................................................................tttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... .............................................................................................................tttgttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttaca.................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-55 bit: 216.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 49 Subject End: 181 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 7.0E-54 bit: 212.0 Len: 131 Query Start:115 Query End:245 Subject Strand: POSITIVE Subject Start: 215 Subject End: 345 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ..................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 7.0E-54 bit: 212.0 Len: 131 Query Start:115 Query End:245 Subject Strand: POSITIVE Subject Start: 149 Subject End: 279 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 130 Query Start:115 Query End:244 Subject Strand: POSITIVE Subject Start: 200 Subject End: 329 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 170 Query Start:133 Query End:302 Subject Strand: POSITIVE Subject Start: 120 Subject End: 289 ....................................................................................................................................ttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... ....................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca.................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 136 Query Start:114 Query End:249 Subject Strand: NEGATIVE Subject Start: 300 Subject End: 435 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaac......................................................................................................................................................................... .................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaac......................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 132 Query Start:113 Query End:244 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 242 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ................................................................................................................gttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 131 Query Start:114 Query End:244 Subject Strand: POSITIVE Subject Start: 111 Subject End: 241 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 132 Query Start:114 Query End:245 Subject Strand: NEGATIVE Subject Start: 94 Subject End: 225 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 132 Query Start:114 Query End:245 Subject Strand: NEGATIVE Subject Start: 151 Subject End: 282 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 130 Query Start:116 Query End:245 Subject Strand: POSITIVE Subject Start: 170 Subject End: 299 ...................................................................................................................ttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ...................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 145 Subject End: 277 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 165 Subject End: 297 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 131 Query Start:115 Query End:245 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 384 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 132 Query Start:114 Query End:245 Subject Strand: NEGATIVE Subject Start: 696 Subject End: 827 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. .................................................................................................................ttttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 188 Query Start:115 Query End:302 Subject Strand: POSITIVE Subject Start: 310 Subject End: 497 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... ..................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgataacaagagaattacacaataggtgtgtctgtgaaaaatatttaca.................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:114 Query End:245 Subject Strand: POSITIVE Subject Start: 185 Subject End: 316 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 131 Query Start:115 Query End:245 Subject Strand: NEGATIVE Subject Start: 386 Subject End: 516 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 190 Query Start:115 Query End:304 Subject Strand: POSITIVE Subject Start: 257 Subject End: 446 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagc.................................................................................................................. ..................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagc.................................................................................................................. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:114 Query End:244 Subject Strand: POSITIVE Subject Start: 141 Subject End: 271 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 158 Query Start:113 Query End:270 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 172 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagtta.................................................................................................................................................... ................................................................................................................gttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgataaagagtaagtta.................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 132 Query Start:113 Query End:244 Subject Strand: POSITIVE Subject Start: 214 Subject End: 345 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ................................................................................................................gttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 9.0E-35 bit: 149.0 Len: 135 Query Start:114 Query End:248 Subject Strand: POSITIVE Subject Start: 91 Subject End: 225 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaa.......................................................................................................................................................................... .................................................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaa.......................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 200 Subject End: 331 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 131 Query Start:114 Query End:244 Subject Strand: POSITIVE Subject Start: 155 Subject End: 285 .................................................................................................................ttttgtaaagattattctgttaa-aaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 132 Query Start:113 Query End:244 Subject Strand: POSITIVE Subject Start: 265 Subject End: 396 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ................................................................................................................gttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 134 Query Start:112 Query End:245 Subject Strand: POSITIVE Subject Start: 8 Subject End: 141 ...............................................................................................................tgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ...............................................................................................................tgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 140 Query Start:113 Query End:252 Subject Strand: NEGATIVE Subject Start: 324 Subject End: 463 ................................................................................................................gttttgtaaagattattctgttaa-aaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgca...................................................................................................................................................................... ................................................................................................................gttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgca...................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 135 Query Start:114 Query End:248 Subject Strand: NEGATIVE Subject Start: 343 Subject End: 477 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaa.......................................................................................................................................................................... .................................................................................................................ttttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaa.......................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 196 Query Start:116 Query End:311 Subject Strand: POSITIVE Subject Start: 113 Subject End: 308 ...................................................................................................................ttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattg........................................................................................................... ...................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattg........................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 145 Query Start:114 Query End:258 Subject Strand: POSITIVE Subject Start: 191 Subject End: 335 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgaca................................................................................................................................................................ .................................................................................................................ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattgaca................................................................................................................................................................ Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 129 Query Start:117 Query End:245 Subject Strand: POSITIVE Subject Start: 190 Subject End: 318 ....................................................................................................................tgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ....................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 8.0E-26 bit: 119.0 Len: 132 Query Start:114 Query End:245 Subject Strand: POSITIVE Subject Start: 79 Subject End: 210 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. .................................................................................................................ttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 130 Query Start:115 Query End:244 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ..................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ..................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 190 Query Start:113 Query End:302 Subject Strand: POSITIVE Subject Start: 143 Subject End: 332 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... ................................................................................................................gttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttaca.................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:165 Query End:199 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ....................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 132 Query Start:113 Query End:244 Subject Strand: POSITIVE Subject Start: 143 Subject End: 274 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 191 Query Start:112 Query End:302 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 239 ...............................................................................................................tgttttgtaaagattattctgtta-aaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... ...............................................................................................................tgttttgtaaagattattc-gtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttaca.................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:114 Query End:244 Subject Strand: POSITIVE Subject Start: 182 Subject End: 312 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. .................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 127 Query Start:110 Query End:236 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 325 .............................................................................................................tttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaa...................................................................................................................................................................................... .............................................................................................................tttgttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa...................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:165 Query End:199 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ....................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt........................................................................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt........................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 191 Query Start:113 Query End:303 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 363 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacag................................................................................................................... ................................................................................................................gttttgtaaagataattcattgaaaaa-cgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactgacaagcaataggttacacaatagttgtgcttgtgaaaaatatttacag................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 130 Query Start:116 Query End:245 Subject Strand: NEGATIVE Subject Start: 261 Subject End: 390 ...................................................................................................................ttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg............................................................................................................................................................................. ...................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttg............................................................................................................................................................................. Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 123 Query Start:114 Query End:236 Subject Strand: POSITIVE Subject Start: 226 Subject End: 348 .................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaa...................................................................................................................................................................................... .................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa...................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 150 Query Start:153 Query End:302 Subject Strand: POSITIVE Subject Start: 180 Subject End: 329 ........................................................................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca.................................................................................................................... ........................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca.................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 132 Query Start:113 Query End:244 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 310 ................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................. ................................................................................................................gttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt.............................................................................................................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:165 Query End:200 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 ....................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt.......................................................................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt.......................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUAUUUAUAUUGUACUAUAUUUAGAAAAUUUAGUAUCUUUAGAAAUGGUGUGUCAAAAGUCAAUUUUGGCACACCUUUAUAUUUUGUGAUAACUGCUUGAAAAAGCCUUUGUUUUGUAAAGAUUAUUCUGUUAAAAAGCGAUAACUGCGCUUUGACAUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUAGCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUGCAACGCAUUGACAGCGAGUAAGUUAUACGAUUGGUGUGCUUGUGAAAAAUAUUUACAGCCUUAUUGCUGUCUUUUUGACCAUAAAAUGAGUUAUAUCAGCUAAACUUCUAUUGUAUUCAGCGUAGCCUAUACUGAUAGCGAAGCGUAUUUAAAAUAUUGUUAUGUGGGUGUUA ((((((((((((...((.((((((((((..((((((............((((((((((((.....))))))))))))....(((((((((.....((((((..(((((((((((((((((..........(((((((..(((.....)))..)))))))...(((((((((((.((((((.((((((((.......)))).)))))))))).)))))))))))...)))))))))).))))))).))).)))..((((((.((((((.(((((.....)))))..((((((.....))))))..))))))))))))........)))))))))..........)))))).))))).........((((..(((((....)))).)..))))......))))).)).)))))))))))) (-122.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACACCCACAUAACAAUAUUUUAAAUACGCUUCGCUAUCAGUAUAGGCUACGCUGAAUACAAUAGAAGUUUAGCUGAUAUAACUCAUUUUAUGGUCAAAAAGACAGCAAUAAGGCUGUAAAUAUUUUUCACAAGCACACCAAUCGUAUAACUUACUCGCUGUCAAUGCGUUGCAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGCUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAAUGUCAAAGCGCAGUUAUCGCUUUUUAACAGAAUAAUCUUUACAAAACAAAGGCUUUUUCAAGCAGUUAUCACAAAAUAUAAAGGUGUGCCAAAAUUGACUUUUGACACACCAUUUCUAAAGAUACUAAAUUUUCUAAAUAUAGUACAAUAUAAAUAUUA ...............(((((((....(((............((((.(((...)))..))))..((((((((((((((.................((.(((((.(((((......))))).....))))).))............((.((((((....((((..((.((((.((((((((.....)))))))).....(((((((((.((((((..((..(((((....)))))))...)))))).))))))))))))).))....)))).))))))))........)))....(((((((.(((......((((....))))...................((((((.(((((.....))))).)))))).))).))))))).))))).))))))......)))......))))))). (-93.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 891 210 161 53 4 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 891 210 161 226 177 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 891 210 161 65 16 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 886 220 171 63 14 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 879 190 141 176 127 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 860 230 181 85 36 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 860 230 181 57 8 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 860 230 181 57 8 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 838 210 161 65 16 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 832 240 191 95 46 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 832 240 191 52 3 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 832 240 191 56 7 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 832 240 191 221 172 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 832 240 191 56 7 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 832 240 191 144 95 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 832 240 191 56 7 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 831 220 171 102 53 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 829 200 151 55 6 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 817 210 161 65 16 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 817 210 161 73 24 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 939 200 151 137 88 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 891 210 161 107 58 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 886 220 171 58 9 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 883 260 211 70 21 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 867 210 161 147 98 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 867 210 161 147 98 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 857 250 203 147 100 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 839 210 161 121 72 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 832 240 191 50 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 832 240 191 78 29 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 830 200 151 147 98 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 823 249 203 53 7 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 817 210 161 151 102 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 817 210 161 147 98 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 810 210 161 147 98 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 784 200 151 137 88 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 741 190 142 127 79 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 738 180 133 117 70 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 726 260 211 50 1 pint:PI1813|3end_hypothetical_protein_1753086..1753236_POSITIVE 692 200 153 151 104 pint:PI1528|3end_hypothetical_protein_1449878..1450028_POSITIVE