Origin IGS:
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
gtaactaaagatttataataatacaataagtttgatattagtagttgattgcttctttctatttacaaatatatacattatagttctaacaaacaagcaaactcttttaatttcattgtttttaacacacttttcttcttcaagcctatacggtaaaacatcttcctcatagagcatcagccgtcataaaaggtactatgcgaccgtccttctacaagaagtcattattcattcctataatacttataatattggacacgtttgtccaataagttggattcatttgtccaactaattggactcgtctatccaatagattggacaaatgtgtccaattaactatactcgtttgtccaatttattatacacatttgtataatatagtctattaaagtactctaagagctcaatatgtatctttttgcctgaaaaatcatcatttttagctattgcagtattattagaattggtgtatctttgcacccaactaaaattaaaacgtaaaaacagggggtcctactctacaacgagtgacttcctgattagctaaaaaaatattatatcaattcattaaaatt

Mask Tandem Repeat Region ================================================
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac

Find is-nt database================================================
Query_seq: PI0585:PI0586|PI0585:PI0586:conserved hypothetical protein:hypothetical protein:->->:533319..533896 578
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI0585:PI0586|PI0585:PI0586:conserved hypothetical protein:hypothetical protein:->->:533319..533896 578
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI0585:PI0586|PI0585:PI0586:conserved hypothetical protein:hypothetical protein:->->:533319..533896 578
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Predict ORF larger than 30AA ================================================
Protein_Len: 56	Strand: +	Start: 69	End: 236
.................................................................... M  F  L  R  F  N  F  S  W  V  Q  R  Y  T  N  S  N  N  T  A  I  A  K  N  D  D  F  S  G  K  K  I  H  I  E  L  L  E  Y  F  N  R  L  Y  Y  T  N  V  Y  N  K  L  D  K  R  V ......................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 48	Strand: +	Start: 221	End: 364
............................................................................................................................................................................................................................ M  G  Q  T  S  I  V  N  W  T  H  L  S  N  L  L  D  R  R  V  Q  L  V  G  Q  M  N  P  T  Y  W  T  N  V  S  N  I  I  S  I  I  G  M  N  N  D  F  L ......................................................................................................................................................................................................................
Protein_Len: 30	Strand: +	Start: 409	End: 498
........................................................................................................................................................................................................................................................................................................................................................................................................................ M  R  K  M  F  Y  R  I  G  L  K  K  K  S  V  L  K  T  M  K  L  K  E  F  A  C  L  L  E  L ................................................................................
Protein_Len: 55	Strand: +	Start: 399	End: 563
.............................................................................................................................................................................................................................................................................................................................................................................................................. M  M  L  Y  E  E  D  V  L  P  Y  R  L  E  E  E  K  C  V  K  N  N  E  I  K  R  V  C  L  F  V  R  T  I  M  Y  I  F  V  N  R  K  K  Q  S  T  T  N  I  K  L  I  V  L  L ...............
Protein_Len: 35	Strand: -	Start: 426	End: 530
......................................................................................................................................................................................................................................................................................................................................................................................................................................... R  I  P  K  F  F  F  L  T  N  F  V  I  F  N  F  S  N  A  Q  K  N  S  S  Y  H  I  Y  K  Y  I  S  L  L  M ................................................
Protein_Len: 53	Strand: -	Start: 410	End: 568
......................................................................................................................................................................................................................................................................................................................................................................................................................... S  S  S  T  K  G  Y  L  S  S  S  S  F  H  T  L  F  L  S  I  L  L  T  Q  K  N  T  L  V  I  I  Y  I  N  T  F  L  F  F  C  D  V  V  L  I  L  S  I  T  N  N  Y  M ..........
Protein_Len: 39	Strand: -	Start: 287	End: 403
.............................................................................................................................................................................................................................................................................................. N  S  L  H  I  W  S  I  P  C  V  H  G  I  N  Y  T  N  Y  S  H  I  I  V  E  Q  L  L  V  T  A  Y  Y  R  K  H  R  S  M ...............................................................................................................................................................................
Protein_Len: 36	Strand: -	Start: 190	End: 297
............................................................................................................................................................................................. Y  V  I  N  Y  L  H  T  Y  Y  I  P  C  V  L  I  T  L  Q  V  C  K  D  L  R  N  S  L  R  T  W  N  T  P  C  M .........................................................................................................................................................................................................................................................................................
Protein_Len: 46	Strand: -	Start: 32	End: 169
............................... S  I  L  F  D  S  T  T  S  Y  S  G  R  N  K  R  K  L  K  L  Q  T  C  L  Y  V  L  E  L  L  V  A  I  A  L  F  S  S  K  E  P  L  F  I  C  M .........................................................................................................................................................................................................................................................................................................................................................................................................................

aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 50	HP_score: -4.4	Tail_Score: -3.35774	Start: 218	End: 265	Full_Region: gactcgtctatccaa tagattggacaaatgtgt ccaattaactat actcgtttgtccaattta ttatacacatttgta
.........................................................................................................................................................................................................................tagattggacaaatgtgtccaattaactatactcgtttgtccaattta.........................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 57	HP_score: -3.0	Tail_Score: -4.31835	Start: 222	End: 261	Full_Region: cgtctatccaataga ttggacaaatgtgt ccaattaactat actcgtttgtccaa tttattatacacatt
.............................................................................................................................................................................................................................ttggacaaatgtgtccaattaactatactcgtttgtccaa.............................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 70	HP_score: -8.5	Tail_Score: -3.15212	Start: 244	End: 261	Full_Region: cgtctatccaataga ttggaca aatg tgtccaa ttaactatactcgtt
...................................................................................................................................................................................................................................................ttggacaaatgtgtccaa.............................................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 78	HP_score: -9.4	Tail_Score: -3.34013	Start: 244	End: 283	Full_Region: AACGAGTATAGTTAA TTGGACACATTTGTCCAA TCTA TTGGATAGACGAGTCCAA TTAGTTGGACAAATG
...................................................................................................................................................................................................................................................TTGGACACATTTGTCCAATCTATTGGATAGACGAGTCCAA.......................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 59	HP_score: -6.2	Tail_Score: -2.9186	Start: 253	End: 296	Full_Region: aataagttggattca tttgtccaactaattgga ctcgtcta tccaatagattggacaaa tgtgtccaattaact
............................................................................................................................................................................................................................................................tttgtccaactaattggactcgtctatccaatagattggacaaa..........................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 100	HP_score: -12.2	Tail_Score: -2.69799	Start: 278	End: 315	Full_Region: atattggacacgttt gtccaataagttggat tcattt gtccaactaattggac tcgtctatccaatag
.....................................................................................................................................................................................................................................................................................gtccaataagttggattcatttgtccaactaattggac.......................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 83	HP_score: -10.3	Tail_Score: -3.43961	Start: 308	End: 329	Full_Region: CAAATGAATCCAACT TATTGGACA AACG TGTCCAATA TTATAAGTATTATAG
...................................................................................................................................................................................................................................................................................................................TATTGGACAAACGTGTCCAATA.........................................................................................................................................................................................................................................................

Find igs database================================================
Query_seq: PI0585:PI0586|PI0585:PI0586:conserved hypothetical protein:hypothetical protein:->->:533319..533896 578
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
Intra-Species Hit: Count: 1	Min: 1	Max: 578	Len: 578
Subject: pint_PI0585_PI0586|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[533319,533896]|578
HSP  1	e-value: 0.0	bit: 1104.0	Len: 578	Query Start:1	Query End:578	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 578
aattttaatgaattgatataatannnnnnnagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac
aattttaatgaattgatataatatttttttagctaatcaggaagtcactcgttgtagagtaggaccccctgtttttacgttttaattttagttgggtgcaaagatacaccaattctaataatactgcaatagctaaaaatgatgatttttcaggcaaaaagatacatattgagctcttagagtactttaatagactatattatacaaatgtgtataataaattggacaaacgagtatagttaattggacacatttgtccaatctattggatagacgagtccaattagttggacaaatgaatccaacttattggacaaacgtgtccaatattataagtattataggaatgaataatgacttcttgtagaaggacggtcgcatagtaccttttatgacggctgatgctctatgaggaagatgttttaccgtataggcttgaagaagaaaagtgtgttaaaaacaatgaaattaaaagagtttgcttgtttgttagaactataatgtatatatttgtaaatagaaagaagcaatcaactactaatatcaaacttattgtattattataaatctttagttac

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAUUUUAAUGAAUUGAUAUAAUAUUUUUUUAGCUAAUCAGGAAGUCACUCGUUGUAGAGUAGGACCCCCUGUUUUUACGUUUUAAUUUUAGUUGGGUGCAAAGAUACACCAAUUCUAAUAAUACUGCAAUAGCUAAAAAUGAUGAUUUUUCAGGCAAAAAGAUACAUAUUGAGCUCUUAGAGUACUUUAAUAGACUAUAUUAUACAAAUGUGUAUAAUAAAUUGGACAAACGAGUAUAGUUAAUUGGACACAUUUGUCCAAUCUAUUGGAUAGACGAGUCCAAUUAGUUGGACAAAUGAAUCCAACUUAUUGGACAAACGUGUCCAAUAUUAUAAGUAUUAUAGGAAUGAAUAAUGACUUCUUGUAGAAGGACGGUCGCAUAGUACCUUUUAUGACGGCUGAUGCUCUAUGAGGAAGAUGUUUUACCGUAUAGGCUUGAAGAAGAAAAGUGUGUUAAAAACAAUGAAAUUAAAAGAGUUUGCUUGUUUGUUAGAACUAUAAUGUAUAUAUUUGUAAAUAGAAAGAAGCAAUCAACUACUAAUAUCAAACUUAUUGUAUUAUUAUAAAUCUUUAGUUAC
(((((((.((..((((((((.....((((((((((..((((..(((((((......))))..)))..)))).......((.......((((...((((........))))....)))).......))..))))))))))......((((((((((......((((.((((.(..(((((.((((((((((((.....(((((((((....)))))))))..(((((((.....((.((((...(((((..((((((((((((..(((((((......)))))))..))))))))))))..)))))...)))).)).....)))))))))))).))))))).))))).).))))....(((((((((((.(.((((((((((((......))))).)))))).).)))))).))))))..........))))..))))))))))......))))))))...)).))))))).(((((..((((((.(((.(((.((.((((.....)))).)).)))....))).))))))........(((((.(((.....)))))))).......)))))...... (-147.54)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GUAACUAAAGAUUUAUAAUAAUACAAUAAGUUUGAUAUUAGUAGUUGAUUGCUUCUUUCUAUUUACAAAUAUAUACAUUAUAGUUCUAACAAACAAGCAAACUCUUUUAAUUUCAUUGUUUUUAACACACUUUUCUUCUUCAAGCCUAUACGGUAAAACAUCUUCCUCAUAGAGCAUCAGCCGUCAUAAAAGGUACUAUGCGACCGUCCUUCUACAAGAAGUCAUUAUUCAUUCCUAUAAUACUUAUAAUAUUGGACACGUUUGUCCAAUAAGUUGGAUUCAUUUGUCCAACUAAUUGGACUCGUCUAUCCAAUAGAUUGGACAAAUGUGUCCAAUUAACUAUACUCGUUUGUCCAAUUUAUUAUACACAUUUGUAUAAUAUAGUCUAUUAAAGUACUCUAAGAGCUCAAUAUGUAUCUUUUUGCCUGAAAAAUCAUCAUUUUUAGCUAUUGCAGUAUUAUUAGAAUUGGUGUAUCUUUGCACCCAACUAAAAUUAAAACGUAAAAACAGGGGGUCCUACUCUACAACGAGUGACUUCCUGAUUAGCUAAAAAAAUAUUAUAUCAAUUCAUUAAAAUU
........((((((((.........))))))))....((((((((((((......((((......((((...((((((...((((((.....((((((................(((((...............((((((..((.....(((((......(((.......)))((((..(((.........)))...)))).)))))....))..))))))...............)))))...((((..((((((((((((((((((((..(((((((..((..((((((....))))))..))..)))))))..))))))))))))))))))))....))))...))))))......(((((((((....)))))))))....................))))))....))))))...))))...))))........((((((((((((((.((.(((((((....((((((....))))))...))))...))).))))))...(((((((((..((((......)))))))))))))..))))))))))........))))))).))))).... (-133.81)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
578	327	281	180	134	pint:PI0513|5end_ion_transporter_471530..471760_POSITIVE
541	280	231	225	181	pint:PI0734|5end_ABC_transporter,_ATP-binding_/_permease_667052..667282_POSITIVE
328	408	370	203	164	pint:PI0789|5end_NAD-utilizing_dehydrogenase_726728..726958_POSITIVE
314	61	21	93	56	pint:PI1799|5end_30S_ribosomal_protein_S2_1732900..1733130_POSITIVE
311	420	373	59	16	pint:PI1728|5end_ATP-dependent_Clp_protease,_proteolytic_subunit_1646916..1647146_POSITIVE
311	79	32	217	164	pint:PI0331|5end_hypothetical_protein_311656..311886_POSITIVE
291	439	396	63	16	pint:PI1950|5end_iron-regulated_membrane_permease_1904468..1904698_POSITIVE
287	433	398	184	143	pint:PI1088|5end_conserved_hypothetical_protein_1011606..1011836_POSITIVE
282	436	394	89	32	pint:PI0829|5end_nucleotidyl_transferase_family;_possible_mannose-1-phosphate_guanyltransferase_765665..765895_POSITIVE
281	407	368	161	111	pint:PI1994|5end_hypothetical_protein_1949360..1949590_POSITIVE
281	107	68	119	68	pint:PI0677|5end_hypothetical_protein_616513..616743_POSITIVE
281	415	372	82	37	pint:PI0107|5end_2-methylthioadenine_synthetase_103280..103510_POSITIVE
279	303	265	226	181	pint:PI0950|5end_50S_ribosomal_protein_L31_883327..883557_POSITIVE
278	420	373	54	1	pint:PI1617|5end_hypothetical_protein_1542923..1543153_POSITIVE
277	438	395	63	8	pint:PI0058|5end_conserved_hypothetical_protein_56398..56628_POSITIVE
275	389	341	138	95	pint:PI1448|5end_hypothetical_protein_1371579..1371809_POSITIVE
273	439	393	66	23	pint:PI0744|5end_DNA_primase/mobilizable_transposon,_excision_protein_674171..674401_POSITIVE
271	437	396	97	57	pint:PI0257|5end_conjugative_transposon_protein,_TraF_249348..249578_POSITIVE
270	71	39	38	1	pint:PI1073|5end_hemogluttinin_A-related_protein_(HagA)_990593..990823_POSITIVE
270	408	361	143	83	pint:PI0158|5end_hypothetical_protein_151042..151272_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
581	290	242	61	13	pint:PI0733|3end_membrane_protein;_predicted_exporter_666958..667108_POSITIVE
320	420	371	61	1	pint:PI1943|3end_hypothetical_protein_1902206..1902356_POSITIVE
311	420	373	52	9	pint:PI1727|3end__ATP-dependent_Clp_protease,_ATP-binding_subunit_1646989..1647139_POSITIVE
311	435	391	53	10	pint:PI0778|3end_hypothetical_protein_714885..715035_POSITIVE
291	308	265	108	53	pint:PI0949|3end_endonuclease_883279..883429_POSITIVE
290	407	361	151	112	pint:PI1429|3end_L-aspartate_oxidase_1349325..1349475_POSITIVE
287	433	398	55	14	pint:PI1087|3end_conserved_hypothetical_protein_1011557..1011707_POSITIVE
278	453	413	128	93	pint:PI2037|3end_TIM-barrel_protein,_NifR3_family_1990369..1990519_POSITIVE
277	438	395	97	42	pint:PI0057|3end_conserved_hypothetical_protein_56512..56662_POSITIVE
271	437	396	89	49	pint:PI0256|3end_conjugative_transposon_protein,_TraE_249420..249570_POSITIVE
270	420	371	69	2	pint:PI0007|3end_hypothetical_protein_7300..7450_POSITIVE
269	408	362	106	57	pint:PI2041|3end_conserved_hypothetical_protein_1994660..1994810_POSITIVE
267	408	364	119	64	pint:PI1382|3end_hypothetical_protein_1304137..1304287_POSITIVE
267	416	373	55	11	pint:PI0281|3end_conserved_hypothetical_protein_266604..266754_POSITIVE
265	408	362	97	54	pint:PI1017|3end_ISPg3-related_transposase,_C-terminal_region_937661..937811_POSITIVE
264	418	374	133	78	pint:PI1837|3end_aspartate_ammonia-lyase_1780406..1780556_POSITIVE
261	408	362	97	53	pint:PI2069|3end_ISPg3-related_transposase,_C-terminal_fragment_2029340..2029490_POSITIVE
259	298	251	93	35	pint:PI1378|3end_GTP-binding_protein_lepA_1301651..1301801_POSITIVE
257	405	364	104	54	pint:PI1973|3end_conserved_hypothetical_protein_1931171..1931321_POSITIVE
257	408	366	56	5	pint:PI0221|3end_DNA_methylase,_site-specific_DNA-methyltransferase_(adenine-specific)_217796..217946_POSITIVE