Origin IGS: taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaatatttttcggaatagcaactattgtataactctctttctatcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaacagagccta Mask Tandem Repeat Region ================================================ taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Find is-nt database================================================ Query_seq: PI0574:PI0575|PI0574:PI0575:hypothetical protein:hypothetical protein:->->:519505..519700 196 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0574:PI0575|PI0574:PI0575:hypothetical protein:hypothetical protein:->->:519505..519700 196 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0574:PI0575|PI0574:PI0575:hypothetical protein:hypothetical protein:->->:519505..519700 196 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Predict ORF larger than 30AA ================================================ Protein_Len: 59 Strand: + Start: 20 End: 196 ................... M I P K K N D N F D L T L R K W L F C N A K P T L L P C K T A A F A M Q N N R F C N A L I E R E L Y N S C Y S E K Y L Protein_Len: 34 Strand: - Start: 90 End: 191 ......................................................................................... A K V T C F L R K Q L A F C Y T K Y H T S L F L T I C Y N S N R F M ..... Protein_Len: 57 Strand: - Start: 1 End: 171 L S Q K T F I I G F F F S L K S K V N R F H S K Q L A F G V S K G H L V A A K A I C F L L N Q L A N I S L S N Y M ......................... taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 41 HP_score: -2.3 Tail_Score: -2.8709 Start: 44 End: 90 Full_Region: ttgcacggtaaaagc gtaggttttgcgttgcaaaag agcca ctttcgcaacgtcaaatcgaa attatcatttttctt ...........................................gtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaa.......................................................................................................... TransTerm Strand: + Conf: 76 HP_score: -7.6 Tail_Score: -4.13767 Start: 64 End: 114 Full_Region: TTTGACGTTGCGAAA GTGGCTCTTTTGCAACGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGCAATGCAAAA ...............................................................GTGGCTCTTTTGCAACGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC.................................................................................. TransTerm Strand: + Conf: 55 HP_score: -5.5 Tail_Score: -3.14132 Start: 118 End: 148 Full_Region: CAAAACAGCCGCTTT TGCAATGCAAAAC AATAG GTTTTGTAATGCG TTGATAGAAAGAGAG .....................................................................................................................TGCAATGCAAAACAATAGGTTTTGTAATGCG................................................ Find igs database================================================ Query_seq: PI0574:PI0575|PI0574:PI0575:hypothetical protein:hypothetical protein:->->:519505..519700 196 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Intra-Species Hit: Count: 57 Min: 1 Max: 196 Len: 196 Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 1.0E-107 bit: 389.0 Len: 196 Query Start:1 Query End:196 Subject Strand: POSITIVE Subject Start: 1 Subject End: 196 taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta taggctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgctattccgaaaaatattta Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 8.0E-55 bit: 214.0 Len: 144 Query Start:11 Query End:154 Subject Strand: NEGATIVE Subject Start: 373 Subject End: 516 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ..........tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgata.......................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-53 bit: 210.0 Len: 146 Query Start:9 Query End:154 Subject Strand: POSITIVE Subject Start: 112 Subject End: 257 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ........gttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgata.......................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-52 bit: 206.0 Len: 168 Query Start:9 Query End:176 Subject Strand: POSITIVE Subject Start: 214 Subject End: 381 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagtt.................... ........gttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaatacgttgatatacagattgttatacaatagtt.................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 146 Query Start:9 Query End:154 Subject Strand: NEGATIVE Subject Start: 27 Subject End: 172 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ........gttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgata.......................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 158 Query Start:9 Query End:166 Subject Strand: POSITIVE Subject Start: 87 Subject End: 244 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagtta.............................. ........gttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgcaaagtgttgatagtgagagagtta.............................. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-48 bit: 192.0 Len: 145 Query Start:32 Query End:176 Subject Strand: POSITIVE Subject Start: 123 Subject End: 267 ...............................aaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagtt.................... ...............................aaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagtt.................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 1.0E-47 bit: 190.0 Len: 132 Query Start:9 Query End:140 Subject Strand: POSITIVE Subject Start: 265 Subject End: 396 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ ........gttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttt........................................................ Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 138 Query Start:10 Query End:147 Subject Strand: POSITIVE Subject Start: 155 Subject End: 292 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgc................................................. .........ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc................................................. Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 137 Query Start:9 Query End:145 Subject Strand: POSITIVE Subject Start: 49 Subject End: 185 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ........gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 136 Query Start:9 Query End:144 Subject Strand: NEGATIVE Subject Start: 328 Subject End: 463 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa.................................................... ........gttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaa.................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 132 Query Start:9 Query End:140 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 242 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ ........gttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 147 Query Start:9 Query End:155 Subject Strand: NEGATIVE Subject Start: 396 Subject End: 542 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatag......................................... ........gttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgatag......................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 122 Query Start:33 Query End:154 Subject Strand: NEGATIVE Subject Start: 74 Subject End: 195 ................................aaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ................................aaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgata.......................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 144 Query Start:10 Query End:153 Subject Strand: POSITIVE Subject Start: 111 Subject End: 254 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat........................................... .........ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgat........................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 144 Query Start:9 Query End:152 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 188 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttga............................................ ........gttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttga............................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 164 Query Start:11 Query End:174 Subject Strand: POSITIVE Subject Start: 310 Subject End: 473 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatag...................... ..........tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgataacaagagaattacacaatag...................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 132 Query Start:10 Query End:141 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 435 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttg....................................................... .........ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg....................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 144 Query Start:11 Query End:154 Subject Strand: POSITIVE Subject Start: 480 Subject End: 623 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ..........tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgata.......................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 143 Query Start:10 Query End:152 Subject Strand: POSITIVE Subject Start: 91 Subject End: 233 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttga............................................ .........ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga............................................ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 102 Query Start:39 Query End:140 Subject Strand: POSITIVE Subject Start: 98 Subject End: 199 ......................................ataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ ......................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................ Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 142 Query Start:12 Query End:153 Subject Strand: POSITIVE Subject Start: 170 Subject End: 311 ...........ttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat........................................... ...........ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat........................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 144 Query Start:10 Query End:153 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 225 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat........................................... .........ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgat........................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 136 Query Start:10 Query End:145 Subject Strand: POSITIVE Subject Start: 341 Subject End: 476 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... .........ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 114 Query Start:32 Query End:145 Subject Strand: POSITIVE Subject Start: 236 Subject End: 349 ...............................aaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ...............................aaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 134 Query Start:11 Query End:144 Subject Strand: POSITIVE Subject Start: 149 Subject End: 282 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa.................................................... ..........tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa.................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 134 Query Start:8 Query End:141 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 230 .......tgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttg....................................................... .......tgttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttg....................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 150 Query Start:5 Query End:154 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 242 ....ctctgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ....ctctgttttgtaaagattattcgtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgata.......................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 7.0E-37 bit: 155.0 Len: 134 Query Start:11 Query End:144 Subject Strand: POSITIVE Subject Start: 60 Subject End: 193 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa.................................................... ..........tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa.................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 145 Query Start:10 Query End:154 Subject Strand: NEGATIVE Subject Start: 138 Subject End: 282 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... .........ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgata.......................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 1.0E-35 bit: 151.0 Len: 144 Query Start:10 Query End:153 Subject Strand: POSITIVE Subject Start: 185 Subject End: 328 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat........................................... .........ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat........................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 130 Query Start:11 Query End:140 Subject Strand: POSITIVE Subject Start: 200 Subject End: 329 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ ..........tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt........................................................ Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 146 Query Start:9 Query End:154 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 228 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ........gttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgata.......................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-34 bit: 145.0 Len: 137 Query Start:9 Query End:145 Subject Strand: POSITIVE Subject Start: 145 Subject End: 281 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ........gttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 108 Query Start:49 Query End:156 Subject Strand: NEGATIVE Subject Start: 681 Subject End: 788 ................................................tttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgataga........................................ ................................................tttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgataga........................................ Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 140 Query Start:9 Query End:148 Subject Strand: POSITIVE Subject Start: 165 Subject End: 304 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcg................................................ ........gttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcg................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 134 Query Start:8 Query End:141 Subject Strand: POSITIVE Subject Start: 112 Subject End: 245 .......tgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttg....................................................... .......tgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg....................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 169 Query Start:10 Query End:178 Subject Strand: POSITIVE Subject Start: 741 Subject End: 909 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagttgc.................. .........ttttgtaaagaaagttcgcaagaaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatatgttgataaacagaaagttatgcgatagttgc.................. Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 146 Query Start:9 Query End:154 Subject Strand: POSITIVE Subject Start: 140 Subject End: 285 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ........gttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgata.......................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 6.0E-28 bit: 125.0 Len: 131 Query Start:10 Query End:140 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 304 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ .........ttttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggtttt........................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-27 bit: 123.0 Len: 134 Query Start:11 Query End:144 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 384 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa.................................................... ..........tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaa.................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 9.0E-27 bit: 121.0 Len: 113 Query Start:33 Query End:145 Subject Strand: POSITIVE Subject Start: 168 Subject End: 280 ................................aaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ................................aaaatgacaatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 9.0E-24 bit: 111.0 Len: 128 Query Start:49 Query End:176 Subject Strand: POSITIVE Subject Start: 226 Subject End: 353 ................................................tttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagtt.................... ................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtt.................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 3.0E-23 bit: 109.0 Len: 162 Query Start:10 Query End:171 Subject Strand: POSITIVE Subject Start: 114 Subject End: 275 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaa......................... .........ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaa......................... HSP 2 e-value: 3.0E-17 bit: 89.7 Len: 65 Query Start:61 Query End:125 Subject Strand: NEGATIVE Subject Start: 157 Subject End: 221 ............................................................aaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgc....................................................................... ............................................................aaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgctttcgcaatgc....................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-23 bit: 109.0 Len: 119 Query Start:11 Query End:129 Subject Strand: POSITIVE Subject Start: 257 Subject End: 375 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaa................................................................... ..........tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-22 bit: 107.0 Len: 138 Query Start:10 Query End:147 Subject Strand: POSITIVE Subject Start: 141 Subject End: 278 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgc................................................. .........ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 1.0E-22 bit: 107.0 Len: 146 Query Start:9 Query End:154 Subject Strand: NEGATIVE Subject Start: 72 Subject End: 217 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ........gttttgtaaagataatttacaaggaaaacggtattttcgatttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttgtaaagcgttgata.......................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 5.0E-22 bit: 105.0 Len: 145 Query Start:10 Query End:154 Subject Strand: POSITIVE Subject Start: 79 Subject End: 223 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... .........ttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgata.......................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 9.0E-21 bit: 101.0 Len: 143 Query Start:9 Query End:151 Subject Strand: POSITIVE Subject Start: 200 Subject End: 341 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttg............................................. ........gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg............................................. Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 137 Query Start:9 Query End:145 Subject Strand: POSITIVE Subject Start: 143 Subject End: 279 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ........gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 133 Query Start:9 Query End:141 Subject Strand: POSITIVE Subject Start: 143 Subject End: 275 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttg....................................................... ........gttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg....................................................... HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 35 Query Start:61 Query End:95 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ............................................................aaagtggctcttttgcaacgcaaaacctacgcttt..................................................................................................... ............................................................aaagcggctcttttgcaacgcaaaacctacgcttt..................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 137 Query Start:9 Query End:145 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 363 ........gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... ........gttttgtaaagataattcatt-gaaaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 136 Query Start:10 Query End:145 Subject Strand: POSITIVE Subject Start: 182 Subject End: 317 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat................................................... .........ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 144 Query Start:11 Query End:154 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 308 ..........tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgata.......................................... ..........tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgata.......................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 143 Query Start:10 Query End:152 Subject Strand: POSITIVE Subject Start: 191 Subject End: 333 .........ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttga............................................ .........ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattga............................................ Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 1.0E-13 bit: 77.8 Len: 59 Query Start:8 Query End:66 Subject Strand: POSITIVE Subject Start: 145 Subject End: 203 .......tgttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtg.................................................................................................................................. .......tgttttgtaaagataattctgaagaaaaacgataatttcgatttggcactgcgaaagtg.................................................................................................................................. HSP 2 e-value: 1.0E-10 bit: 67.9 Len: 42 Query Start:112 Query End:153 Subject Strand: POSITIVE Subject Start: 249 Subject End: 290 ...............................................................................................................cgcttttgcaatgcaaaacaataggttttgtaatgcgttgat........................................... ...............................................................................................................cgcttttggaatgcaaaacaataggttttgtaatgcgctgat........................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 5.0E-10 bit: 65.9 Len: 101 Query Start:40 Query End:140 Subject Strand: NEGATIVE Subject Start: 416 Subject End: 516 .......................................taatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt........................................................ .......................................taatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggtttt........................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGGCUCUGUUUUGUAAAGAUAAUUCCGAAGAAAAAUGAUAAUUUCGAUUUGACGUUGCGAAAGUGGCUCUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGCAAUGCAAAACAAUAGGUUUUGUAAUGCGUUGAUAGAAAGAGAGUUAUACAAUAGUUGCUAUUCCGAAAAAUAUUUA ..(((.(((((.(((((......(((....))).........((((...(..(((((((((((((((((.(((((((.((.((((.......))))..))))))))).))))))))))))).((((((((.....))))))))..))))..)..)))).....))))).)))))..)))................. (-52.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUAUUUUUCGGAAUAGCAACUAUUGUAUAACUCUCUUUCUAUCAACGCAUUACAAAACCUAUUGUUUUGCAUUGCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAAGAGCCACUUUCGCAACGUCAAAUCGAAAUUAUCAUUUUUCUUCGGAAUUAUCUUUACAAAACAGAGCCUA ............((....(((.....)))....((((.((((.......(((..((((......))))..))).((((.((((.((((.(((((((((...(((((....))))).)).))))))).)))).)))).)))).........)))).........(((....)))...............)))))).. (-42.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 949 100 51 190 141 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 894 119 71 78 30 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 894 119 71 204 156 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 875 100 51 59 10 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 869 100 51 59 10 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 855 100 51 201 152 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 851 110 61 69 20 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 823 130 81 89 40 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 823 130 81 50 1 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 823 130 81 77 28 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 823 130 81 50 1 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 823 130 81 61 12 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 823 130 81 138 89 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 823 130 81 50 1 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 823 130 81 61 12 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 819 120 71 106 57 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 818 100 54 47 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 794 110 61 230 181 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 794 110 61 69 20 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 787 100 51 59 10 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 903 110 61 151 102 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 873 100 51 141 92 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 869 100 51 151 102 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 866 100 51 115 67 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 840 100 51 101 52 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 823 130 81 131 82 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 823 130 81 72 23 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 820 100 51 141 92 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 798 110 61 151 102 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 794 110 61 52 3 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 787 100 51 151 102 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 785 140 91 54 5 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 785 140 91 54 5 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 766 100 51 145 96 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 750 100 51 141 92 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 722 140 93 48 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 720 110 61 151 102 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 714 88 41 151 104 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 713 140 91 50 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 703 89 41 151 103 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE