Origin IGS: tgaatgttcttaggtacatcgagctgagctgcatactctacggtttcgtcagcttttacgctggtaggaatactgccttctacaccgtagaagctgtagttcatacgtgctacgtggtccatatcgatagccactgagcctggaaggtcttcaaagcctcccatcttgccatgtttgccaccagcatagtagttgctttgtttgtaacccttgatgccattttctataagaacgaaagaaactttatagtttacgttttgttcgtcagcgaagaatgtggtgagagcctttgcattgattttcttcttggtgtcgtcagtaaagtttgcctcgatttctacgcctatatgtggtgggttagccacatacttgttgtgcatcacttccaaagttcctgcttctggagatgtaggatttttcaggttgcgattgacataacaacctggatagcctttgaaagtcagtttgtcataagagtttgttgtcaaggcgtcgctcttatgtacggcaattccgatgaaggtttctgggtatttctcagccatgtgtctgaaggctacgatacctcttggacaccaaccgcaccatgttcctgttccttcttctacaacaaatcgttgctgaggaattgcgtcctttacctttacatttgtatagtcgctgttgttgccagcataagcgtcagcttcgccatcaacgctgatgagtctgaacttcacggtatggataccattcttgctgaatccagaatagtcgatagaaaactctttctcaacgttagcacccatcgttgtcttgaactctgctaccttttcttcagcatcgtctatcgtgtagcccacttgcaaggttcttgcaatgcgtggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaagtaattgtatgaaaaaaatattttttcttttctcattgcttctctgcctcatcgctattgaggcgaaagcagccccaaccagttgttactggggatactgcaacagcaaggtaacaggcgaatttggctctaagacaaaagcccaaggcgcaatttacataccagccgaagttgccgaactttacaaaggaaagaccatttctgtaattaaagtgggattggcagctatgtcagacaatgttaaggtgttcattacaaaagaccttaatggcgaaagtgctaccacaaagacagtaggaaagctgtacaatggttggaacgaggttaagcttagctctgcctacacaatagacggaaagggtttctacattggctatagctatgaaggaaacaacaagtctatgggtcactcggagatgtattcgccaaacggctgctgggctgacttaggcgacggttggaaaaactatgctaccgacagcaagcacaatgcactcgccctgacccttcaggcacagattactggcgaagatatgccaaaagacttgtggctctacacaaaacgaaacgttatcgtaaagaagaacgcgtcttgcaagttcaattttggtgtaataaacttgagtccacgcattgcaagaaccttgcaagtgggctacacgatagacgatgctgaagaaaaggtagcagagttcaagacaacgatgggtgctaacgttgagaaagagttttctatcgactattctggattcagcaagaatggtatccataccgtgaagttcagactcatcagcgttgatggcgaagctgacgcttatgctggcaacaacagcgactatacaaatgtaaaggtaaaggacgcaattcctcagcaacgatttgttgtagaagaaggaacaggaacatggtgcggttggtgtccaagaggtatcgtagccttcagacacatggctgagaaatacccagaaaccttcatcggaattgccgtacataagagcgacgccttgacaacaaactcttatgacaaactgactttcaaaggctatccaggttgttatgtcaatcgcaacctgaaaaatcctacatctccagaagcaggaactttggaagtgatgcacaacaagtatgtggctaacccaccacatataggcgtagaaatcgaggcaaactttactgacgacaccaagaagaaaatcaatgcaaaggctctcaccacattcttcgctgacgaacaaaacgtaaactataaagtttctttcgttcttatagaaaatggcatcaagggttacaaacaaagcaactactatgctggtggcaaacatggcaagatgggaggctttgaagaccttccaggctcagtggctatcgatatggaccacgtagcacgtatgaactacagcttctacggtgtagaaggcagtattcctaccagcgtaaaagctgacgaaaccgtagagtatgcagctcagctcgatgtacctaagaacattca Mask Tandem Repeat Region ================================================ tgaatgttcttaggtacatcgagctgagctgcatactctacggtttcgtcagcttttacgctggtaggaatactgccttctacaccgtagaagctgtagttcatacgtgctacgtggtccatatcgatagccactgagcctggaaggtcttcaaagcctcccatcttgccatgtttgccaccagcatagtagttgctttgtttgtaacccttgatgccattttctataagaacgaaagaaactttatagtttacgttttgttcgtcagcgaagaatgtggtgagagcctttgcattgattttcttcttggtgtcgtcagtaaagtttgcctcgatttctacgcctatatgtggtgggttagccacatacttgttgtgcatcacttccaaagttcctgcttctggagatgtaggatttttcaggttgcgattgacataacaacctggatagcctttgaaagtcagtttgtcataagagtttgttgtcaaggcgtcgctcttatgtacggcaattccgatgaaggtttctgggtatttctcagccatgtgtctgaaggctacgatacctcttggacaccaaccgcaccatgttcctgttccttcttctacaacaaatcgttgctgaggaattgcgtcctttacctttacatttgtatagtcgctgttgttgccagcataagcgtcagcttcgccatcaacgctgatgagtctgaacttcacggtatggataccattcttgctgaatccagaatagtcgatagaaaactctttctcaacgttagcacccatcgttgtcttgaactctgctaccttttcttcagcatcgtctatcgtgtagcccacttgcaaggttcttgcaatgcgtggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Find is-nt database================================================ Query_seq: PI0425:PI0427|PI0425:PI0427:hypothetical protein:conserved hypothetical protein:->->:389783..391279 1497 tgaatgttcttaggtacatcgagctgagctgcatactctacggtttcgtcagcttttacgctggtaggaatactgccttctacaccgtagaagctgtagttcatacgtgctacgtggtccatatcgatagccactgagcctggaaggtcttcaaagcctcccatcttgccatgtttgccaccagcatagtagttgctttgtttgtaacccttgatgccattttctataagaacgaaagaaactttatagtttacgttttgttcgtcagcgaagaatgtggtgagagcctttgcattgattttcttcttggtgtcgtcagtaaagtttgcctcgatttctacgcctatatgtggtgggttagccacatacttgttgtgcatcacttccaaagttcctgcttctggagatgtaggatttttcaggttgcgattgacataacaacctggatagcctttgaaagtcagtttgtcataagagtttgttgtcaaggcgtcgctcttatgtacggcaattccgatgaaggtttctgggtatttctcagccatgtgtctgaaggctacgatacctcttggacaccaaccgcaccatgttcctgttccttcttctacaacaaatcgttgctgaggaattgcgtcctttacctttacatttgtatagtcgctgttgttgccagcataagcgtcagcttcgccatcaacgctgatgagtctgaacttcacggtatggataccattcttgctgaatccagaatagtcgatagaaaactctttctcaacgttagcacccatcgttgtcttgaactctgctaccttttcttcagcatcgtctatcgtgtagcccacttgcaaggttcttgcaatgcgtggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0425:PI0427|PI0425:PI0427:hypothetical protein:conserved hypothetical protein:->->:389783..391279 1497 tgaatgttcttaggtacatcgagctgagctgcatactctacggtttcgtcagcttttacgctggtaggaatactgccttctacaccgtagaagctgtagttcatacgtgctacgtggtccatatcgatagccactgagcctggaaggtcttcaaagcctcccatcttgccatgtttgccaccagcatagtagttgctttgtttgtaacccttgatgccattttctataagaacgaaagaaactttatagtttacgttttgttcgtcagcgaagaatgtggtgagagcctttgcattgattttcttcttggtgtcgtcagtaaagtttgcctcgatttctacgcctatatgtggtgggttagccacatacttgttgtgcatcacttccaaagttcctgcttctggagatgtaggatttttcaggttgcgattgacataacaacctggatagcctttgaaagtcagtttgtcataagagtttgttgtcaaggcgtcgctcttatgtacggcaattccgatgaaggtttctgggtatttctcagccatgtgtctgaaggctacgatacctcttggacaccaaccgcaccatgttcctgttccttcttctacaacaaatcgttgctgaggaattgcgtcctttacctttacatttgtatagtcgctgttgttgccagcataagcgtcagcttcgccatcaacgctgatgagtctgaacttcacggtatggataccattcttgctgaatccagaatagtcgatagaaaactctttctcaacgttagcacccatcgttgtcttgaactctgctaccttttcttcagcatcgtctatcgtgtagcccacttgcaaggttcttgcaatgcgtggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0425:PI0427|PI0425:PI0427:hypothetical protein:conserved hypothetical protein:->->:389783..391279 1497 tgaatgttcttaggtacatcgagctgagctgcatactctacggtttcgtcagcttttacgctggtaggaatactgccttctacaccgtagaagctgtagttcatacgtgctacgtggtccatatcgatagccactgagcctggaaggtcttcaaagcctcccatcttgccatgtttgccaccagcatagtagttgctttgtttgtaacccttgatgccattttctataagaacgaaagaaactttatagtttacgttttgttcgtcagcgaagaatgtggtgagagcctttgcattgattttcttcttggtgtcgtcagtaaagtttgcctcgatttctacgcctatatgtggtgggttagccacatacttgttgtgcatcacttccaaagttcctgcttctggagatgtaggatttttcaggttgcgattgacataacaacctggatagcctttgaaagtcagtttgtcataagagtttgttgtcaaggcgtcgctcttatgtacggcaattccgatgaaggtttctgggtatttctcagccatgtgtctgaaggctacgatacctcttggacaccaaccgcaccatgttcctgttccttcttctacaacaaatcgttgctgaggaattgcgtcctttacctttacatttgtatagtcgctgttgttgccagcataagcgtcagcttcgccatcaacgctgatgagtctgaacttcacggtatggataccattcttgctgaatccagaatagtcgatagaaaactctttctcaacgttagcacccatcgttgtcttgaactctgctaccttttcttcagcatcgtctatcgtgtagcccacttgcaaggttcttgcaatgcgtggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 39 Max: 863 Len: 825 Subject: UniRef90_A1ZUV0 Cluster: Lipoprotein, putative; n=1; Microscilla marina ATCC 23134|Rep: Lipoprotein, putative - Microscilla marina ATCC 23134 HSP 1 e-value: 5.0E-13 bit: 79.0 Len: 468 Query Start:186 Query End:653 Subject Strand: null Subject Start: 74 Subject End: 239 ......................................................................................................................................................................................... T N V K V K D A I P Q - - - Q R F V V E E G T G T W C G W C P R G I V A F R H M A E K Y P E T F I G I A V H K S D A L T T N S Y D K L - - - - - T F K G Y P G C Y V N R N L K N - - - - - - P T S P E A G T L E V M H N K Y V A N P P H I G V E I E A N F T D D T K K K I N A K A L T T F F A D E Q N V N Y K V S F V L I E N G I - - - - K G Y K Q S N Y Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................... T N G K V P E T I P A S I T Q K V L I E E F T G T W C G Y C P S G A K S V H D A E L K Y P H Q V I G V G I H Y R D K M E T R M F A H L E T I L G N I N S F P G A T F N R K T V N G S K V S H P G N S N R N S G Q I I N N - - - T T S P K L G I A I E T N V N S S - - - - - N E V E V L T Y V G I K E K G E Y A I T V Y L I E D K V V G Q G N G Y D Q A N Y H ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q26FT1 Cluster: Hypothetical protein; n=1; Flavobacteria bacterium BBFL7|Rep: Hypothetical protein - Flavobacteria bacterium BBFL7 HSP 1 e-value: 4.0E-8 bit: 62.4 Len: 825 Query Start:39 Query End:863 Subject Strand: null Subject Start: 53 Subject End: 302 ...................................... R I A R T L Q V G Y T I D D A E E K V A E F K T T M G A N V E K E F S I D Y S G F S K N G I H T V K F R L I S V D G E A D A Y A G N N S D Y T N V K V K D A I P Q Q - - - R F V V E E G T G T W C G W C P R - - - G I V A F R H M A E K Y P E T F I G I A V H K S D A - - - - L T T N S Y D K L T F K G Y P G C Y V N R N L K - N P T S P E A G T L - E V M H N K Y V A N P P H I G V E I E A N F T D D T K K K I N A K A L T T F F A D E Q N V N Y K V S F V L I E N G I K G Y K Q S N Y Y A G G K H G K M G G F E D L P G S V A I D M D H V A R M N Y S F Y G V E G S I P T S V K A D E T V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................... R V Y D N T L V N F T V R D A N - - - - - - - - - - G A N V S A Q A V I T V D G T A I T G S S A I - - - - L T G I G S K S V Q A T L G S D T S N T V S V D V I N P S Y T T K A L I E D Y T G A W C G W C P R I S Q G I I D V H N M S G - - G E D V I A V A V H N G D S M V F P L E A N M R S Q F G V T G F P T G I L N R D A R W A S V S G D A M N I G Q P M Q L L T T V K P - - V G L A I N S S V S G S T - - - V N A T V K V G F D L D Q S G M - - K L V V V L L E N G V V - E A Q T N Y - - - - - T N N F G G G S S I P N F V H N D I - - - - - L R A S F T D I F G D V - - - I P A D Q Q V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1W003 Cluster: Hypothetical protein; n=1; Psychroflexus torquis ATCC 700755|Rep: Hypothetical protein - Psychroflexus torquis ATCC 700755 HSP 1 e-value: 5.0E-7 bit: 58.9 Len: 609 Query Start:189 Query End:797 Subject Strand: null Subject Start: 48 Subject End: 262 ............................................................................................................................................................................................ K T T M G A N V E K E F S I D Y S G F S K - - - - - - - - - - N G I H T V K F R L I S V D G E A D A Y A G N N S D Y T N V K V K D - - - - A I P Q Q R F V V E E G T G T W C G W C P R G I V A F - R H M A E K Y P E T F I G I A V H K S D A L T T N S Y D K L - - - - - - - - - T F K G Y P G C Y V N R N L K N P T S P E A G T L E V M H N K Y V A N P P H I G V E I E A N F T D D T K K K I N A K A L T T F F A D E Q N V N Y K V S F V L I E N G I K G Y K Q S N Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................ E V T F E V N T E G S E S L D V T G E A K I L V N G E I L V G N S F S T A E V G V Y E V T A - - - S Y L N L E S S I L N I E F Y D D G S Q V I F K K R A L I E D Y T G T W C G W C P R - - V S F G M E L V A N Q S D A V E F V A I H R A P A G T Q D P F N Y L E A G P L E L L I N T P G Y P K G F I N R L T Q W D F P E P D N T G Q V L D F T Q G I N - P R L G I K M S S D L Q N N T - - - I D L K V E V Q F A K D F E N T R L V V - - Y L L E N A L V - Y P Q V N Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ tgaatgttcttaggtacatcgagctgagctgcatactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 18 End: 134 ................. M E L S C I L Y G F V S F Y A G R N T A F Y T V E A V V H T C Y V V H I D S H ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 277 End: 435 .................................................................................................................................................................................................................................................................................... M V R A F A L I F F L V S S V K F A S I S T P I C G G L A T Y L L C I T S K V P A S G D V G F F R L R L T ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 511 End: 621 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P M K V S G Y F S A M C L K A T I P L G H Q P H H V P V P S S T T N R C ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: + Start: 569 End: 700 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M D T N R T M F L F L L L Q Q I V A E E L R P L P L H L Y S R C C C Q H K R Q L R H Q R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 171 End: 1043 .......................................................................................................................................................................... M F A T S I V V A L F V T L D A I F Y K N E R N F I V Y V L F V S E E C G E S L C I D F L L G V V S K V C L D F Y A Y M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1071 End: 1259 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M H L R V T H R L V V S F I A I A N V E T L S V Y C V G R A K L N L V P T I V Q L S Y C L C G S T F A I K V F C N E H L .............................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 1183 End: 1308 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Y S F P T V F V V A L S P L R S F V M N T L T L S D I A A N P T L I T E M V F P L ............................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 1347 End: 1457 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G F C L R A K F A C Y L A V A V S P V T T G W G C F R L N S D E A E K Q ........................................ Protein_Len: 60 Strand: - Start: 820 End: 1035 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C H T S E L K N C W F Q V Q L V R E E K R Y R K T K H L A V L R K A Y R R W Y D T G S P D P R T C Q A Q Q R Y C L K E M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 113 End: 220 ................................................................................................................ T T W I S L W Q A Q F T K L A E W R A M N A V L M T T A K N T V R S A M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 3 End: 1484 .. K Y L E A V E A P I Y I A G Q A K T K S G F E G T V K S N C Y G W Y C S T P A A K A E I A I L C L L L S F L F F I K K M ............. tgaatgttcttaggtacatcgagctgagctgcatactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 747 End: 776 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAAAGAGTTTTCTATCGACTATTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 82 Start: 842 End: 858 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGGTTCTTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgaatgttcttaggtacatcgagctgagctgcatactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 53 HP_score: -6.1 Tail_Score: -2.79276 Start: 50 End: 96 Full_Region: ACTCTACGGTTTCGT CAGCTTTTACGCTGGTAGGA ATACTGCC TTCTACACCGTAGAAGCTG TAGTTCATACGTGCT .................................................CAGCTTTTACGCTGGTAGGAATACTGCCTTCTACACCGTAGAAGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -5.1 Tail_Score: -4.66833 Start: 393 End: 414 Full_Region: CATCACTTCCAAAGT TCCTGCTTC TGGA GATGTAGGA TTTTTCAGGTTGCGA ........................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCTTCTGGAGATGTAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 44 HP_score: -2.4 Tail_Score: -3.16608 Start: 600 End: 628 Full_Region: CCATGTTCCTGTTCC TTCTTCTACAAC AAATC GTTGCTGAGGAA TTGCGTCCTTTACCT .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTACAACAAATCGTTGCTGAGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI0425:PI0427|PI0425:PI0427:hypothetical protein:conserved hypothetical protein:->->:389783..391279 1497 tgaatgttcttaggtacatcgagctgagctgcatactcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta Intra-Species Hit: Count: 1 Min: 1 Max: 1497 Len: 1497 Subject: pint_PI0425_PI0427|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[389783,391279]|1497 HSP 1 e-value: 0.0 bit: 1215.0 Len: 634 Query Start:864 Query End:1497 Subject Strand: POSITIVE Subject Start: 864 Subject End: 1497 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatannnnnnncatacaattactttta ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tggactcaagtttattacaccaaaattgaacttgcaagacgcgttcttctttacgataacgtttcgttttgtgtagagccacaagtcttttggcatatcttcgccagtaatctgtgcctgaagggtcagggcgagtgcattgtgcttgctgtcggtagcatagtttttccaaccgtcgcctaagtcagcccagcagccgtttggcgaatacatctccgagtgacccatagacttgttgtttccttcatagctatagccaatgtagaaaccctttccgtctattgtgtaggcagagctaagcttaacctcgttccaaccattgtacagctttcctactgtctttgtggtagcactttcgccattaaggtcttttgtaatgaacaccttaacattgtctgacatagctgccaatcccactttaattacagaaatggtctttcctttgtaaagttcggcaacttcggctggtatgtaaattgcgccttgggcttttgtcttagagccaaattcgcctgttaccttgctgttgcagtatccccagtaacaactggttggggctgctttcgcctcaatagcgatgaggcagagaagcaatgagaaaagaaaaaatatttttttcatacaattactttta HSP 2 e-value: 4.0E-12 bit: 75.8 Len: 38 Query Start:1 Query End:38 Subject Strand: POSITIVE Subject Start: 1 Subject End: 38 tgaatgttcttaggtacatcgagctgagctgcatactc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgaatgttcttaggtacatcgagctgagctgcatactc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAUGUUCUUAGGUACAUCGAGCUGAGCUGCAUACUCUACGGUUUCGUCAGCUUUUACGCUGGUAGGAAUACUGCCUUCUACACCGUAGAAGCUGUAGUUCAUACGUGCUACGUGGUCCAUAUCGAUAGCCACUGAGCCUGGAAGGUCUUCAAAGCCUCCCAUCUUGCCAUGUUUGCCACCAGCAUAGUAGUUGCUUUGUUUGUAACCCUUGAUGCCAUUUUCUAUAAGAACGAAAGAAACUUUAUAGUUUACGUUUUGUUCGUCAGCGAAGAAUGUGGUGAGAGCCUUUGCAUUGAUUUUCUUCUUGGUGUCGUCAGUAAAGUUUGCCUCGAUUUCUACGCCUAUAUGUGGUGGGUUAGCCACAUACUUGUUGUGCAUCACUUCCAAAGUUCCUGCUUCUGGAGAUGUAGGAUUUUUCAGGUUGCGAUUGACAUAACAACCUGGAUAGCCUUUGAAAGUCAGUUUGUCAUAAGAGUUUGUUGUCAAGGCGUCGCUCUUAUGUACGGCAAUUCCGAUGAAGGUUUCUGGGUAUUUCUCAGCCAUGUGUCUGAAGGCUACGAUACCUCUUGGACACCAACCGCACCAUGUUCCUGUUCCUUCUUCUACAACAAAUCGUUGCUGAGGAAUUGCGUCCUUUACCUUUACAUUUGUAUAGUCGCUGUUGUUGCCAGCAUAAGCGUCAGCUUCGCCAUCAACGCUGAUGAGUCUGAACUUCACGGUAUGGAUACCAUUCUUGCUGAAUCCAGAAUAGUCGAUAGAAAACUCUUUCUCAACGUUAGCACCCAUCGUUGUCUUGAACUCUGCUACCUUUUCUUCAGCAUCGUCUAUCGUGUAGCCCACUUGCAAGGUUCUUGCAAUGCGUGGACUCAAGUUUAUUACACCAAAAUUGAACUUGCAAGACGCGUUCUUCUUUACGAUAACGUUUCGUUUUGUGUAGAGCCACAAGUCUUUUGGCAUAUCUUCGCCAGUAAUCUGUGCCUGAAGGGUCAGGGCGAGUGCAUUGUGCUUGCUGUCGGUAGCAUAGUUUUUCCAACCGUCGCCUAAGUCAGCCCAGCAGCCGUUUGGCGAAUACAUCUCCGAGUGACCCAUAGACUUGUUGUUUCCUUCAUAGCUAUAGCCAAUGUAGAAACCCUUUCCGUCUAUUGUGUAGGCAGAGCUAAGCUUAACCUCGUUCCAACCAUUGUACAGCUUUCCUACUGUCUUUGUGGUAGCACUUUCGCCAUUAAGGUCUUUUGUAAUGAACACCUUAACAUUGUCUGACAUAGCUGCCAAUCCCACUUUAAUUACAGAAAUGGUCUUUCCUUUGUAAAGUUCGGCAACUUCGGCUGGUAUGUAAAUUGCGCCUUGGGCUUUUGUCUUAGAGCCAAAUUCGCCUGUUACCUUGCUGUUGCAGUAUCCCCAGUAACAACUGGUUGGGGCUGCUUUCGCCUCAAUAGCGAUGAGGCAGAGAAGCAAUGAGAAAAGAAAAAAUAUUUUUUUCAUACAAUUACUUUUA .((((((....(((((....((((.((((((((...((((((((......(((......)))(((((.....)))))......))))))))...))))))))....((((......((((((((((.(((((.....(((.((((((...((((.((......(((..((((((((..(....((((....(((((.......))))).....))))............((((((((.(((((....)))))...))))))))......)..))))))))..)))......)).))))...)))))).)))...((((((...((..((((.((............((((((((......))))))))...(((.((((((...((((((((....)))).)))))))))).)))...)))))).)).))))))......(((..((.(((((((..............(((((((((.((((.....))))..)))))))))..(((.....)))..)))))))))..))).....((((.(....).)))).)))))))))).....))))).......))))...))))..((...((((((..((((.....))))..))))))..))......)))))..)))))).....(.((((..(((.....)))..)))).).((((((((.(((.(((((.((((..........(((((.((((.........((((((....((((.(((.........)))..)))).....))))))..............(((((.(((((((..((((((((((((((.(((((((.((.....(((((((...))))))).(((((....((((((((............)))))))).....)))))....)).))))))))))....(.((((((......)))))).)..(((((........)))))......))).))))))))....((((((..(...)..))))))...))))))).))))).))))))))).((..(((.((((((..((((((.(((.(((((........(((((....((((((.....(((((...(((.((....))..)))..))))).......))))))...(((((.((((((..((....................))..)))))))))))........(((((((..........(((((((.(((......))).)))))))...((.....))..)))))))....)))))...(((((((...((.....))))))))).))))).)))...))))))....((((...(((.....((((((......)))))).....)))...)))).((((....)))).....(((((....)))))...)))))))))..)))))).))))).))))))...))))).((((((((((........))))))))))............. (-433.37) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAGUAAUUGUAUGAAAAAAAUAUUUUUUCUUUUCUCAUUGCUUCUCUGCCUCAUCGCUAUUGAGGCGAAAGCAGCCCCAACCAGUUGUUACUGGGGAUACUGCAACAGCAAGGUAACAGGCGAAUUUGGCUCUAAGACAAAAGCCCAAGGCGCAAUUUACAUACCAGCCGAAGUUGCCGAACUUUACAAAGGAAAGACCAUUUCUGUAAUUAAAGUGGGAUUGGCAGCUAUGUCAGACAAUGUUAAGGUGUUCAUUACAAAAGACCUUAAUGGCGAAAGUGCUACCACAAAGACAGUAGGAAAGCUGUACAAUGGUUGGAACGAGGUUAAGCUUAGCUCUGCCUACACAAUAGACGGAAAGGGUUUCUACAUUGGCUAUAGCUAUGAAGGAAACAACAAGUCUAUGGGUCACUCGGAGAUGUAUUCGCCAAACGGCUGCUGGGCUGACUUAGGCGACGGUUGGAAAAACUAUGCUACCGACAGCAAGCACAAUGCACUCGCCCUGACCCUUCAGGCACAGAUUACUGGCGAAGAUAUGCCAAAAGACUUGUGGCUCUACACAAAACGAAACGUUAUCGUAAAGAAGAACGCGUCUUGCAAGUUCAAUUUUGGUGUAAUAAACUUGAGUCCACGCAUUGCAAGAACCUUGCAAGUGGGCUACACGAUAGACGAUGCUGAAGAAAAGGUAGCAGAGUUCAAGACAACGAUGGGUGCUAACGUUGAGAAAGAGUUUUCUAUCGACUAUUCUGGAUUCAGCAAGAAUGGUAUCCAUACCGUGAAGUUCAGACUCAUCAGCGUUGAUGGCGAAGCUGACGCUUAUGCUGGCAACAACAGCGACUAUACAAAUGUAAAGGUAAAGGACGCAAUUCCUCAGCAACGAUUUGUUGUAGAAGAAGGAACAGGAACAUGGUGCGGUUGGUGUCCAAGAGGUAUCGUAGCCUUCAGACACAUGGCUGAGAAAUACCCAGAAACCUUCAUCGGAAUUGCCGUACAUAAGAGCGACGCCUUGACAACAAACUCUUAUGACAAACUGACUUUCAAAGGCUAUCCAGGUUGUUAUGUCAAUCGCAACCUGAAAAAUCCUACAUCUCCAGAAGCAGGAACUUUGGAAGUGAUGCACAACAAGUAUGUGGCUAACCCACCACAUAUAGGCGUAGAAAUCGAGGCAAACUUUACUGACGACACCAAGAAGAAAAUCAAUGCAAAGGCUCUCACCACAUUCUUCGCUGACGAACAAAACGUAAACUAUAAAGUUUCUUUCGUUCUUAUAGAAAAUGGCAUCAAGGGUUACAAACAAAGCAACUACUAUGCUGGUGGCAAACAUGGCAAGAUGGGAGGCUUUGAAGACCUUCCAGGCUCAGUGGCUAUCGAUAUGGACCACGUAGCACGUAUGAACUACAGCUUCUACGGUGUAGAAGGCAGUAUUCCUACCAGCGUAAAAGCUGACGAAACCGUAGAGUAUGCAGCUCAGCUCGAUGUACCUAAGAACAUUCA ..............((((.......(((((((((((....((((((.((.((((((.......))))))))))))))...((((.(((((((.(((((((...(((..((((...((((...(((..((.((((..........)))).))..)))...))))...((.(((..(((((((((((((((....(((((.....))))).....))))))....)))))))))............((((((((.((........)).)))))))))))...((((..(((.((.((((........((((((((((((...(((((.((((..(((...)))..))))..........(.....).)))))..)))))..))))))).....(....).....)))).))))))))).)).......(((((((((((.(((.(((((((((((..(((...((((....((((.(((((((..(((((.((.....))..((((((((..((....))..)))......)))))...((((((((((((((((..(.............((..((((.((.....))..))))..)))..))))))...)))))))))).....(.(((((((((...(((((((...)))))))))))))).)).)........))))).......))))))).)))).....)))).((((((((((..((((((..(((((..((....))..)))))...)))))).....))))))))))..))).))).)))).)))).)))))))..)))))))))))...(((..((((.......))))..((.(((....))).))...)))...)))..))))))).))))))).)))).))))))))))).........((((((....(((((...(((((......)))))..)))))..(((((((....((((.....((......))...((((((.(((((((((((.(((((((.......................((((((((((......((((((((.((....)).)))))))).....((((.(.((....)).).)))).)))))))))).((((.......((((((((........))))))))..)))).....))))))).(((((((..(..........((((((.......((....))..........))))))....(((.......)))...)..)))))))....)))))))))).)...))))))....))))..........(((.....(((((((((((....((((.(....(((((((((....)).))))))).(((..((((((((....)))).))))..)))..)))))...(((.((((((((...)))))).)).)))...)))))))))))...(((.(((....)))..))).)))..)))))))...))))))........)))) (-437.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 1090 1041 209 142 pint:PI0676|5end_hypothetical_protein_614576..614806_POSITIVE 406 1090 1045 121 58 pint:PI0161|5end_possible_TonB_receptor_153364..153594_POSITIVE 388 1021 986 208 162 pint:PI0736|5end_transcriptional_regulator,_TetR_family_670580..670810_POSITIVE 386 68 21 110 66 pint:PI2021|5end_DNA_repair_protein_1977925..1978155_POSITIVE 386 1078 1037 65 32 pint:PI0260|5end_conjugative_transposon_protein,_TraJ_253023..253253_POSITIVE 385 218 173 121 74 pint:PI1475|5end_possible_short_chain_dehydrogenase_1397142..1397372_POSITIVE 385 43 3 209 169 pint:PI0635|5end_dephospho-CoA_kinase_580954..581184_POSITIVE 383 1456 1413 231 176 pint:PI0913|5end_glycerate_dehydrogenase_842700..842930_POSITIVE 380 198 154 145 97 pint:PI0762|5end_mannose-6-phosphate_isomerase,_class_I_696420..696650_POSITIVE 377 1058 1011 74 19 pint:PI1671|5end_hypothetical_protein_1586397..1586627_POSITIVE 376 1068 1021 212 164 pint:PI0701|5end_hypothetical_protein_638356..638586_POSITIVE 376 700 659 58 18 pint:PI0139|5end_pyridoxine_biosynthesis_protein_131835..132065_POSITIVE 375 429 382 140 81 pint:PI0116|5end_conserved_hypothetical_protein_110213..110443_POSITIVE 373 1100 1051 128 64 pint:PI0915|5end_hypothetical_protein_845183..845413_POSITIVE 369 1060 1011 83 28 pint:PI0189|5end_integrase_179623..179853_POSITIVE 367 987 941 53 3 pint:PI0725|5end_hypothetical_protein_658623..658853_POSITIVE 367 1030 981 176 128 pint:PI0458|5end_translation_elongation_factor_G_(EF-G)/tetracycline_resistance_factor_Q_429877..430107_POSITIVE 366 542 501 175 133 pint:PI1451|5end_outer_membrane_receptor_proteins,_tonB_dependent_(possibly_iron_transport_related)_1372931..1373161_POSITIVE 365 1026 985 97 47 pint:PI1468|5end_conserved_hypothetical_protein;_probable_TPR_domain_protein_1393900..1394130_POSITIVE 361 1070 1026 131 82 pint:PI1575|5end_LemA_protein_1501143..1501373_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 388 1021 986 139 93 pint:PI0735|3end_ABC_transporter,_ATP-binding_/_permease_670591..670741_POSITIVE 383 1456 1413 143 88 pint:PI0912|3end_conserved_hypothetical_protein_842692..842842_POSITIVE 374 178 133 126 71 pint:PI0906|3end_hypothetical_protein_836008..836158_POSITIVE 367 1030 981 143 95 pint:PI0457|3end_30S_ribosomal_protein_S7_429924..430074_POSITIVE 366 542 501 55 13 pint:PI1450|3end_hypothetical_protein_1372891..1373041_POSITIVE 362 1017 976 130 81 pint:PI1366|3end_conserved_hypothetical_protein;_possible_hydrolase,_HAD_superfamily_1286647..1286797_POSITIVE 361 1070 1026 134 85 pint:PI1574|3end_conserved_hypothetical_protein_1501226..1501376_POSITIVE 360 1040 992 69 15 pint:PI1363|3end_hypothetical_protein_1281922..1282072_POSITIVE 360 1010 961 126 70 pint:PI0652|3end_conserved_hypothetical_protein_595792..595942_POSITIVE 356 60 13 55 2 pint:PI0096|3end_glycerol-3-phosphate_cytidylyltransferase_93305..93455_POSITIVE 355 1068 1032 58 15 pint:PI2016|3end_ribosomal_large_subunit_pseudouridine_synthase_D_1974933..1975083_POSITIVE 351 1070 1025 58 7 pint:PI0188|3end_phosphomethylpyrimidine_kinase_179670..179820_POSITIVE 350 710 661 75 24 pint:PI1633|3end_hypothetical_protein_1552955..1553105_POSITIVE 349 705 662 54 17 pint:PI1924|3end_cytidine_deaminase_1866495..1866645_POSITIVE 348 1421 1384 144 106 pint:PI0160|3end_conserved_hypothetical_protein_153268..153418_POSITIVE 346 367 329 140 104 pint:PI1715|3end_conserved_hypothetical_protein;_possible_DNA-binding_protein,_histone-like_family_1632324..1632474_POSITIVE 344 608 570 150 104 pint:PI0205|3end_deoxyuridine_5'-triphosphate_nucleotidohydrolase_198095..198245_POSITIVE 343 1014 973 100 62 pint:PI1947|3end_hypothetical_protein_1902865..1903015_POSITIVE 342 148 101 80 24 pint:PI0115|3end_hypothetical_protein_108669..108819_POSITIVE 341 1039 991 67 2 pint:PI2099|3end_D-alanyl-D-alanine_dipeptidase_2053277..2053427_POSITIVE