Origin IGS: taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taatcaatcatacttctactactaataatataaacggggctgtaggattttttcctacaaccccgttttgctttctgtaaaaatggattggaaaaagcgggaaacaacttcagttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataacgaagcagttacacggcaattatagttacgaaaaatatttacacgtttcctgtcgttttcttgctcttataattcggttta Mask Tandem Repeat Region ================================================ taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Find is-nt database================================================ Query_seq: PI0412:PI0413|PI0412:PI0413:primosomal protein N', replication factor Y:outer membrane protein:->->:382213..382552 340 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0412:PI0413|PI0412:PI0413:primosomal protein N', replication factor Y:outer membrane protein:->->:382213..382552 340 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0412:PI0413|PI0412:PI0413:primosomal protein N', replication factor Y:outer membrane protein:->->:382213..382552 340 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 46 End: 147 ............................................. M F R N Y N C R V T A S L S M H C K T Y C F A F Q K R L F C T V K A ................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 63 End: 338 .............................................................. M P C N C F V I N A L Q N L L F C V P K A A V L H G K S V G F A A Q K S R F R N A K A Q L S V F N R I I F T K L K L F P .. Protein_Len: 30 Strand: - Start: 105 End: 194 ........................................................................................................ Q K A N W F R S N Q V T F A Y T K C R L L A A K A I G F R M .................................................................................................................................................. Protein_Len: 38 Strand: - Start: 88 End: 201 ....................................................................................... H M A F G I T K R E L L P Q K A R Y F R L N Q L A F S G S E C H W L A T I M ........................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 253 . Q K T I L A N C F R N N Q T G F A A T K C P L L T P K A A C F L R K R L A L A C N D T K L L I I K V F S F N N G A K E M ....................................................................................... taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -14.8 Tail_Score: -3.57144 Start: 123 End: 173 Full_Region: TTTTGCGTTCCAAAA GCGGCTGTTTTGCACGGTAAAAGC GTA GGTTTTGCAGCGCAAAAGAGCCGC TTTCGCAATGCCAAA ..........................................................................................................................GCGGCTGTTTTGCACGGTAAAAGCGTAGGTTTTGCAGCGCAAAAGAGCCGC....................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -14.8 Tail_Score: -4.07568 Start: 123 End: 173 Full_Region: tttggcattgcgaaa gcggctcttttgcgctgcaaaacc tac gcttttaccgtgcaaaacagccgc ttttggaacgcaaaa ..........................................................................................................................gcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgc....................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -17.7 Tail_Score: -4.3587 Start: 276 End: 306 Full_Region: TTACAGAAAGCAAAA CGGGGTTGTAGGA AAAAA TCCTACAGCCCCG TTTATATTATTAGTA ...................................................................................................................................................................................................................................................................................CGGGGTTGTAGGAAAAAATCCTACAGCCCCG.................................. TransTerm Strand: - Conf: 100 HP_score: -15.5 Tail_Score: -4.65153 Start: 276 End: 306 Full_Region: tactaataatataaa cggggctgtagga ttttt tcctacaaccccg ttttgctttctgtaa ...................................................................................................................................................................................................................................................................................cggggctgtaggattttttcctacaaccccg.................................. Find igs database================================================ Query_seq: PI0412:PI0413|PI0412:PI0413:primosomal protein N', replication factor Y:outer membrane protein:->->:382213..382552 340 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Intra-Species Hit: Count: 55 Min: 1 Max: 340 Len: 340 Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 0.0 bit: 674.0 Len: 340 Query Start:1 Query End:340 Subject Strand: POSITIVE Subject Start: 1 Subject End: 340 taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta taaaccgaattataagagcaagaaaacgacaggaaacgtgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaagttgtttcccgctttttccaatccatttttacagaaagcaaaacggggttgtaggaaaaaatcctacagccccgtttatattattagtagtagaagtatgattgatta Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 4.0E-64 bit: 246.0 Len: 144 Query Start:84 Query End:227 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 254 ...................................................................................atcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ...................................................................................atcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-61 bit: 238.0 Len: 144 Query Start:83 Query End:226 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 623 ..................................................................................tatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ..................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa.................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-59 bit: 230.0 Len: 136 Query Start:90 Query End:225 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 305 .........................................................................................gcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaa................................................................................................................... .........................................................................................gcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 1.0E-58 bit: 228.0 Len: 139 Query Start:90 Query End:228 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 303 .........................................................................................gcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ .........................................................................................gcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaac................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 146 Query Start:82 Query End:227 Subject Strand: POSITIVE Subject Start: 137 Subject End: 282 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. .................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................. Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 134 Query Start:96 Query End:229 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 181 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaact............................................................................................................... ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaact............................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 6.0E-57 bit: 222.0 Len: 132 Query Start:96 Query End:227 Subject Strand: POSITIVE Subject Start: 94 Subject End: 225 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ...............................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-57 bit: 222.0 Len: 144 Query Start:85 Query End:228 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 288 ....................................................................................tcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ....................................................................................tcaatgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaac................................................................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 6.0E-57 bit: 222.0 Len: 144 Query Start:85 Query End:228 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 256 ....................................................................................tcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ....................................................................................tcaatgcgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaac................................................................................................................ Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 131 Query Start:96 Query End:226 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 279 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa.................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 130 Query Start:97 Query End:226 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa.................................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 146 Query Start:81 Query End:226 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 455 ................................................................................gttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ................................................................................gttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa.................................................................................................................. Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 4.0E-55 bit: 216.0 Len: 137 Query Start:92 Query End:228 Subject Strand: POSITIVE Subject Start: 93 Subject End: 229 ...........................................................................................attgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ...........................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 9.0E-53 bit: 208.0 Len: 145 Query Start:82 Query End:226 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 204 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. .................................................................................ttatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa.................................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 4.0E-52 bit: 206.0 Len: 132 Query Start:96 Query End:227 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 316 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ...............................................................................................caaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa................................................................................................................. Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 131 Query Start:96 Query End:226 Subject Strand: POSITIVE Subject Start: 254 Subject End: 384 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ...............................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa.................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 9.0E-50 bit: 198.0 Len: 144 Query Start:83 Query End:226 Subject Strand: POSITIVE Subject Start: 373 Subject End: 516 ..................................................................................tatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ..................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa.................................................................................................................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 135 Query Start:93 Query End:227 Subject Strand: POSITIVE Subject Start: 301 Subject End: 435 ............................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ............................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 5.0E-48 bit: 192.0 Len: 137 Query Start:91 Query End:227 Subject Strand: POSITIVE Subject Start: 691 Subject End: 827 ..........................................................................................cattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ..........................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa................................................................................................................. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 128 Query Start:81 Query End:208 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 247 ................................................................................gttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaa.................................................................................................................................... ................................................................................gttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa.................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 9.0E-47 bit: 188.0 Len: 131 Query Start:96 Query End:226 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 345 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. ...............................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa.................................................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 149 Query Start:82 Query End:230 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 258 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactg.............................................................................................................. .................................................................................ttatcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaactg.............................................................................................................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 149 Query Start:78 Query End:226 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 405 .............................................................................ttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. .............................................................................ttcgttatcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa.................................................................................................................. Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 132 Query Start:97 Query End:228 Subject Strand: POSITIVE Subject Start: 111 Subject End: 242 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac................................................................................................................ Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-42 bit: 172.0 Len: 131 Query Start:97 Query End:227 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 271 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 139 Query Start:90 Query End:228 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 337 .........................................................................................gcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ .........................................................................................gcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaac-agccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaac................................................................................................................ Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 146 Query Start:83 Query End:228 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 359 ..................................................................................tatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ..................................................................................tatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaac................................................................................................................ Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 7.0E-35 bit: 149.0 Len: 147 Query Start:82 Query End:228 Subject Strand: POSITIVE Subject Start: 26 Subject End: 172 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ .................................................................................ttatcaatgctttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaac................................................................................................................ Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 146 Query Start:83 Query End:228 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 154 ..................................................................................tatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ..................................................................................tatcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaac................................................................................................................ Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 5.0E-33 bit: 143.0 Len: 136 Query Start:92 Query End:227 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 226 ...........................................................................................attgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ...........................................................................................attgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa................................................................................................................. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 146 Query Start:82 Query End:227 Subject Strand: POSITIVE Subject Start: 332 Subject End: 477 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. .................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa................................................................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 133 Query Start:96 Query End:228 Subject Strand: POSITIVE Subject Start: 410 Subject End: 542 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ...............................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaac................................................................................................................ Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 157 Query Start:70 Query End:226 Subject Strand: POSITIVE Subject Start: 152 Subject End: 308 .....................................................................gtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaa.................................................................................................................. .....................................................................gtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa.................................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 142 Query Start:86 Query End:227 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 296 .....................................................................................caatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagttt-ttaacagaattatctttacaaaa................................................................................................................. .....................................................................................caatgcattataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaa................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 143 Query Start:85 Query End:227 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 333 ....................................................................................tcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ....................................................................................tcaatgcattacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 137 Query Start:91 Query End:227 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 215 ..........................................................................................cattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ..........................................................................................cattacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa................................................................................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 133 Query Start:96 Query End:228 Subject Strand: POSITIVE Subject Start: 331 Subject End: 463 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagttt-ttaacagaattatctttacaaaac................................................................................................................ ...............................................................................................caaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaac................................................................................................................ Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 137 Query Start:97 Query End:233 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 241 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaag........................................................................................................... ................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaatactgaag........................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 141 Query Start:84 Query End:224 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 330 ...................................................................................atcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttaca.................................................................................................................... ...................................................................................atcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca.................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 137 Query Start:93 Query End:229 Subject Strand: NEGATIVE Subject Start: 142 Subject End: 278 ............................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaact............................................................................................................... ............................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaact............................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 124 Query Start:105 Query End:228 Subject Strand: POSITIVE Subject Start: 199 Subject End: 322 ........................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ........................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac................................................................................................................ Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 123 Query Start:105 Query End:227 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 348 ........................................................................................................ttgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ........................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa................................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 127 Query Start:79 Query End:205 Subject Strand: POSITIVE Subject Start: 89 Subject End: 215 ..............................................................................tcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttt....................................................................................................................................... ..............................................................................tcgttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttt....................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 127 Query Start:96 Query End:222 Subject Strand: NEGATIVE Subject Start: 507 Subject End: 633 ...............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatcttta...................................................................................................................... ...............................................................................................caaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta...................................................................................................................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 146 Query Start:82 Query End:227 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 259 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgta-ggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. .................................................................................ttatcaatacattataaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaa-catacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaa................................................................................................................. HSP 2 e-value: 9.0E-10 bit: 65.9 Len: 57 Query Start:120 Query End:176 Subject Strand: POSITIVE Subject Start: 165 Subject End: 221 .......................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgcttt.................................................................................................................................................................... .......................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt.................................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 110 Query Start:79 Query End:188 Subject Strand: POSITIVE Subject Start: 39 Subject End: 148 ..............................................................................tcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaa........................................................................................................................................................ ..............................................................................tcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa........................................................................................................................................................ Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 190 Query Start:39 Query End:228 Subject Strand: POSITIVE Subject Start: 121 Subject End: 310 ......................................tgtaaatatttttcgtaactataattgccgtgtaactgcttcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ......................................tgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac................................................................................................................ HSP 2 e-value: 8.0E-7 bit: 56.0 Len: 36 Query Start:141 Query End:176 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 259 ............................................................................................................................................aaaagcgtaggttttgcagcgcaaaagagccgcttt.................................................................................................................................................................... ............................................................................................................................................aaaagcgtaggttttgcaatgcaaaagagccgcttt.................................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 133 Query Start:97 Query End:229 Subject Strand: NEGATIVE Subject Start: 142 Subject End: 274 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaact............................................................................................................... ................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaact............................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 6.0E-17 bit: 89.7 Len: 137 Query Start:97 Query End:233 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 312 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaactgaag........................................................................................................... ................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaattgaag........................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 144 Query Start:82 Query End:225 Subject Strand: POSITIVE Subject Start: 247 Subject End: 390 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaa................................................................................................................... .................................................................................ttatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa................................................................................................................... Subject: pint_PI1099_PI1100|low molecular weight protein-tyrosine-phosphatase:conserved hypothetical protein; possible rhodanese-domain protein|POSITIVE:POSITIVE|[1023697,1024049]|353 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 68 Query Start:161 Query End:228 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 170 ................................................................................................................................................................gcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ................................................................................................................................................................gcaaaagagccgctttcgcaacgtcaaaacgcagttatcactttttaagggaattatctttacaaaac................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 31 Query Start:93 Query End:123 Subject Strand: NEGATIVE Subject Start: 164 Subject End: 194 ............................................................................................ttgcaaaacctattgttttgcgttccaaaag......................................................................................................................................................................................................................... ............................................................................................ttgcaaaacctattgttttgcgttgcaaaag......................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 132 Query Start:97 Query End:228 Subject Strand: POSITIVE Subject Start: 233 Subject End: 363 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac................................................................................................................ ................................................................................................aaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaaac................................................................................................................ Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 107 Query Start:82 Query End:188 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 286 .................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaa........................................................................................................................................................ .................................................................................ttatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa........................................................................................................................................................ Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 131 Query Start:97 Query End:227 Subject Strand: POSITIVE Subject Start: 174 Subject End: 304 ................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................. ................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAACCGAAUUAUAAGAGCAAGAAAACGACAGGAAACGUGUAAAUAUUUUUCGUAACUAUAAUUGCCGUGUAACUGCUUCGUUAUCAAUGCAUUGCAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAGCGCAAAAGAGCCGCUUUCGCAAUGCCAAAGCGCAGUUAUCAGUUUUUAACAGAAUUAUCUUUACAAAACUGAAGUUGUUUCCCGCUUUUUCCAAUCCAUUUUUACAGAAAGCAAAACGGGGUUGUAGGAAAAAAUCCUACAGCCCCGUUUAUAUUAUUAGUAGUAGAAGUAUGAUUGAUUA .............((((((..((((.((((.(....).((((((.((..(((((((((((((((((..(((((.(((............)))))))).........((((((((((.(.(((((((((.((((((.(.((((((.(...).)))))).).)))))).))))))))).).)))).)))))))))))))).))))....)).)))..)).))))))........))))))))..))))))..(((((.((((((((.(....).((((((((((((((((.....))))))))))))))))............))))))))..))))).... (-105.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCAAUCAUACUUCUACUACUAAUAAUAUAAACGGGGCUGUAGGAUUUUUUCCUACAACCCCGUUUUGCUUUCUGUAAAAAUGGAUUGGAAAAAGCGGGAAACAACUUCAGUUUUGUAAAGAUAAUUCUGUUAAAAACUGAUAACUGCGCUUUGGCAUUGCGAAAGCGGCUCUUUUGCGCUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGCAAUGCAUUGAUAACGAAGCAGUUACACGGCAAUUAUAGUUACGAAAAAUAUUUACACGUUUCCUGUCGUUUUCUUGCUCUUAUAAUUCGGUUUA .....((((......................((((((((.(((((((.....))))))).)))))))).((..(((((....)))))..(((((..(((((((((....((((((((....(((....)))....))))))))((((((.((((((.((.(((((((((((((.((((((((.(.((((.......)))).).)))))))).)))))))))).....(((((((.....)))))))...))).))....)))))).((......)).....))))))................)))))))))..)))))..))...........)))).. (-102.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 959 160 111 211 162 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 959 160 111 104 55 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 959 180 131 65 16 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 940 160 111 104 55 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 929 160 111 193 142 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 927 150 101 227 178 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 927 150 101 54 5 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 916 180 131 65 16 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 914 190 141 51 2 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 911 180 131 217 168 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 909 160 111 62 11 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 907 150 101 187 138 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 898 150 101 214 165 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 881 200 151 52 3 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 853 180 131 176 127 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 853 180 131 63 14 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 853 180 131 231 182 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 848 170 121 221 172 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 837 199 151 57 9 pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE 833 180 131 62 13 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 990 180 131 117 68 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 959 180 131 90 41 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 948 160 111 146 97 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 923 150 101 148 99 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 909 160 111 148 97 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 907 150 101 148 99 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 907 150 101 148 99 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 907 150 101 148 99 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 907 150 101 148 99 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 907 150 101 136 87 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 907 150 101 148 99 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 889 160 111 148 97 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 888 150 101 148 99 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 853 160 111 148 97 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 853 160 111 143 92 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 831 150 101 148 99 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 779 160 111 148 97 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 738 160 111 148 97 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 720 126 81 151 106 pint:PI0826|3end_hypothetical_protein_764045..764195_POSITIVE 718 126 81 151 102 pint:PI2023|3end_hypothetical_protein_1978832..1978982_POSITIVE