Origin IGS: tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttccacgttcaagtgaaagaatcaaggacgtgttctttgatataccccctcgcttatatcgctcatcgaatcgtgatatcatcgaagacacattcctccaccgacatattcgacggtgcaaatatatggctcggtgatgctgtaatcagcgtgatttactttagtgcgtacttgtggcttcgatttggatagttgtggcttcgtatgaggtaagggatttaggcacaacacttagtaactttgcagtaagcgataagtcggtatttcatggctttgaaaacatacatttcgagagaataacatatcgttcttcggaacgaatttatttgcgtcagtgcaaatagcaaggtatgtcttgcgttacccgaaattatttcggtaactcaaaacccttgctcttgcagagggcagaacacctccgaagtcggtgttcttggatagaagttttcgttgtcttgattggctattttatcgtgaacgctctctaatggatttcaattgtgtttagcacgttctatttccagaagagagaattacaaaccattaaaatccaaagta Mask Tandem Repeat Region ================================================ tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Find is-nt database================================================ Query_seq: PI0397:PI0398|PI0397:PI0398:conserved hypothetical protein:hypothetical protein:->->:362960..363517 558 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0397:PI0398|PI0397:PI0398:conserved hypothetical protein:hypothetical protein:->->:362960..363517 558 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0397:PI0398|PI0397:PI0398:conserved hypothetical protein:hypothetical protein:->->:362960..363517 558 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 217 End: 324 ........................................................................................................................................................................................................................ M C T D A N K F V P K N D M L F S R N V C F Q S H E I P T Y R L L Q S Y .......................................................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 185 End: 337 ........................................................................................................................................................................................ M I S G N A R H T L L F A L T Q I N S F R R T I C Y S L E M Y V F K A M K Y R L I A Y C K V T K C C A ............................................................................................................................................................................................................................. Protein_Len: 50 Strand: + Start: 328 End: 477 ....................................................................................................................................................................................................................................................................................................................................... M L C L N P L P H T K P Q L S K S K P Q V R T K V N H A D Y S I T E P Y I C T V E Y V G G G M C L R ................................................................................. Protein_Len: 30 Strand: + Start: 404 End: 493 ................................................................................................................................................................................................................................................................................................................................................................................................................... M T L I T A S P S H I F A P S N M S V E E C V F D D I T I R ................................................................. Protein_Len: 42 Strand: + Start: 432 End: 557 ............................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y L H R R I C R W R N V S S M I S R F D E R Y K R G G I S K N T S L I L S L E R G . Protein_Len: 38 Strand: - Start: 425 End: 538 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ R A M Y K C R R I H R H L F T D E I I D R N S S R Y L R P P I D F F V D K M .................... Protein_Len: 59 Strand: - Start: 370 End: 546 ................................................................................................................................................................................................................................................................................................................................................................................. G F R L W L Y A S F Y I V S I V A D G L W I N A G D F I D T S S H T K S S I V I R H A I Y A L P Y I L S C T R S E K M ............ Protein_Len: 56 Strand: - Start: 218 End: 385 ......................................................................................................................................................................................................................... K C Q R L Y I R E S S R Y T I R E F H I N E F G H F V S K D S V A F N S L T T G L D R V E Y S A V V I W I S A M ............................................................................................................................................................................. Protein_Len: 45 Strand: - Start: 121 End: 255 ........................................................................................................................ G L V G V E S T N Q G R C S C P N Q T V S I I E P L A L C V K S N A S V C I F E N R L V M ............................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 74 End: 208 ......................................................................... L A N V I F Y G I L V V F V E I W S C R S R L H E A R Q L L L P K S N G F Y N R T V C S M .............................................................................................................................................................................................................................................................................................................................................................. tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -4.7 Tail_Score: -3.38046 Start: 200 End: 215 Full_Region: ATAATTTCGGGTAAC GCAAG ACATAC CTTGC TATTTGCACTGACGC .......................................................................................................................................................................................................GCAAGACATACCTTGC....................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -5.4 Tail_Score: -4.46514 Start: 238 End: 248 Full_Region: aataacatatcgttc ttcg gaa cgaa tttatttgcgtcagt .............................................................................................................................................................................................................................................ttcggaacgaa...................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI0397:PI0398|PI0397:PI0398:conserved hypothetical protein:hypothetical protein:->->:362960..363517 558 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Intra-Species Hit: Count: 2 Min: 1 Max: 558 Len: 558 Subject: pint_PI0397_PI0398|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[362960,363517]|558 HSP 1 e-value: 0.0 bit: 1106.0 Len: 558 Query Start:1 Query End:558 Subject Strand: POSITIVE Subject Start: 1 Subject End: 558 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa Subject: pint_PI0246_PI0247|conserved hypothetical protein:conjugative transposon protein, TraA|POSITIVE:POSITIVE|[244660,245512]|853 HSP 1 e-value: 4.0E-19 bit: 97.6 Len: 89 Query Start:150 Query End:238 Subject Strand: POSITIVE Subject Start: 149 Subject End: 237 .....................................................................................................................................................gccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaat................................................................................................................................................................................................................................................................................................................................ .....................................................................................................................................................gccctctgcaagagcaagagttctgagttaccgaatttatttcgagtaacgcaggacatatcttgctatttgctccggcgcaaataaat................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-19 bit: 97.6 Len: 81 Query Start:314 Query End:394 Subject Strand: POSITIVE Subject Start: 315 Subject End: 395 .........................................................................................................................................................................................................................................................................................................................tgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgca.................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................tgcaaagttactaagcgttgtgcctaaagcacttacctcttacggagccacaaatacgcaaatcgaagccacaagtacgca.................................................................................................................................................................... Inter-species Hit: Count: 2 Min: 1 Max: 558 Len: 558 Subject: NC_002950_PG1442_PG1444|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[1528121,1528885]|765 HSP 1 e-value: 0.0 bit: 1074.0 Len: 558 Query Start:1 Query End:558 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 765 tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacacaattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagtgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtggaa tactttggattttaatggtttgtaattctctcttctggaaatagaacgtgctaaacataattgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaggagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttactaagcgttgtgcctaaatcccttacctcatacgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcgaagaacacgtccttgattctttcacttgaacgtggaa Subject: NC_002950_PG0829_PG0831|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[886837,887542]|706 HSP 1 e-value: 1.0E-142 bit: 507.0 Len: 264 Query Start:61 Query End:324 Subject Strand: POSITIVE Subject Start: 1 Subject End: 264 ............................................................ttgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgttttcaaagccatgaaataccgacttatcgcttactgcaaagttac.......................................................................................................................................................................................................................................... ............................................................ttgaaatccattagagagcgttcacgataaaatagccaatcaagacaacgaaaacttctatccaagaacaccgacttcggaggtgttctgccctctgcaagagcaagggttttgagttaccgaaataatttcgggtaacgcaagacataccttgctatttgcactgacgcaaataaattcgttccgaagaacgatatgttattctctcgaaatgtatgtttcccaagccatgaaataccgacttatcgcttactgcaaagttac.......................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-72 bit: 274.0 Len: 202 Query Start:355 Query End:556 Subject Strand: POSITIVE Subject Start: 295 Subject End: 496 ..................................................................................................................................................................................................................................................................................................................................................................acgaagccacaactatccaaatcgaagccacaagtacgcactaaagtaaatcacgctgattacagcatcaccgagccatatatttgcaccgtcgaatatgtcggtggaggaatgtgtcttcgatgatatcacgattcgatgagcgatataagcgagggggtatatcaaagaacacgtccttgattctttcacttgaacgtgg.. ..................................................................................................................................................................................................................................................................................................................................................................acgaagccacaattatccaaatcgatgccacaagtacgcactaaaggaaatcacgctgattacagcatcaccgaaccatatatttgcactgtcgaatatgtcggtgatggtatgtgtcttcgataacatcacgtttcgatgagcgatataggcgagggtgtatgtcaaagaacatgtccttgattctttcactcgaacgtgg.. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACUUUGGAUUUUAAUGGUUUGUAAUUCUCUCUUCUGGAAAUAGAACGUGCUAAACACAAUUGAAAUCCAUUAGAGAGCGUUCACGAUAAAAUAGCCAAUCAAGACAACGAAAACUUCUAUCCAAGAACACCGACUUCGGAGGUGUUCUGCCCUCUGCAAGAGCAAGGGUUUUGAGUUACCGAAAUAAUUUCGGGUAACGCAAGACAUACCUUGCUAUUUGCACUGACGCAAAUAAAUUCGUUCCGAAGAACGAUAUGUUAUUCUCUCGAAAUGUAUGUUUUCAAAGCCAUGAAAUACCGACUUAUCGCUUACUGCAAAGUUACUAAGUGUUGUGCCUAAAUCCCUUACCUCAUACGAAGCCACAACUAUCCAAAUCGAAGCCACAAGUACGCACUAAAGUAAAUCACGCUGAUUACAGCAUCACCGAGCCAUAUAUUUGCACCGUCGAAUAUGUCGGUGGAGGAAUGUGUCUUCGAUGAUAUCACGAUUCGAUGAGCGAUAUAAGCGAGGGGGUAUAUCAAAGAACACGUCCUUGAUUCUUUCACUUGAACGUGGAA .....(((((((((((.(((((((.((((.((.....))...))))..))).))))...)))))))))))...((((((((.(((((.(.((((((............................((((((((..(....).))))))))((.(..(((((((((((((((((((.(((((((((.....))).)))))).))))))...))))))).))))))..)..))........((((((....))))))...)))))).).)))...)).))))))))....(((((.......(((((...((.....)).)))))..((((((.(((((((...((.((((((((((.((((........((((...(((((((.((((..(((........)))..((..((((....)))).(((((((....((((((((......)))))))))))))))..)).)))).)))))))))))......))))))))).)...)))).))..)))))))..((((((((......)).))))))))))))..))))).. (-151.04) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCCACGUUCAAGUGAAAGAAUCAAGGACGUGUUCUUUGAUAUACCCCCUCGCUUAUAUCGCUCAUCGAAUCGUGAUAUCAUCGAAGACACAUUCCUCCACCGACAUAUUCGACGGUGCAAAUAUAUGGCUCGGUGAUGCUGUAAUCAGCGUGAUUUACUUUAGUGCGUACUUGUGGCUUCGAUUUGGAUAGUUGUGGCUUCGUAUGAGGUAAGGGAUUUAGGCACAACACUUAGUAACUUUGCAGUAAGCGAUAAGUCGGUAUUUCAUGGCUUUGAAAACAUACAUUUCGAGAGAAUAACAUAUCGUUCUUCGGAACGAAUUUAUUUGCGUCAGUGCAAAUAGCAAGGUAUGUCUUGCGUUACCCGAAAUUAUUUCGGUAACUCAAAACCCUUGCUCUUGCAGAGGGCAGAACACCUCCGAAGUCGGUGUUCUUGGAUAGAAGUUUUCGUUGUCUUGAUUGGCUAUUUUAUCGUGAACGCUCUCUAAUGGAUUUCAAUUGUGUUUAGCACGUUCUAUUUCCAGAAGAGAGAAUUACAAACCAUUAAAAUCCAAAGUA ...(((((((...(((.....))).))))))).....(((.(((((..(((((((((....((((((((((((..((((((((((((.((((......(((((.(......).)))))......(((((((.((((((((((....))))))....))))..))).))))..)))).)))))))...))).))..))).)))).)))))((((((...(((((.......)))))...)))))).))))))))...)..))))).)))..((((((........((..((((((.((((((...((((((....)))))).(((((((..(((..(((((..(((((((...((.(((.((((((.(((.....))))))))).))).))))))))).)))))...))).(((((((.........)))))))..))))))).)))...))).)))))).))...........((((...((((((..((((.......((((.....)))).......))))..))))))..))))..............)))))). (-164.54) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 530 394 360 183 149 pint:PI0226|5end_ABC_transporter,_ATP-binding_/_permease_protein_222110..222340_POSITIVE 530 394 360 111 77 pint:PI0225|5end_conserved_hypothetical_protein_222038..222268_POSITIVE 496 400 352 46 1 pint:PI0219|5end_conserved_hypothetical_protein_211412..211642_POSITIVE 358 170 125 161 100 pint:PI0198|5end_hypothetical_protein_190719..190949_POSITIVE 354 164 121 57 19 pint:PI0604|5end_O-succinylbenzoic_acid--CoA_ligase_550825..551055_POSITIVE 345 160 123 34 4 pint:PI0126|5end_conserved_hypothetical_protein_117925..118155_POSITIVE 341 470 437 59 27 pint:PI0563|5end_possible_integral_membrane_protein_510248..510478_POSITIVE 338 174 143 161 130 pint:PI1777|5end_conserved_hypothetical_protein_1709402..1709632_POSITIVE 334 487 444 183 129 pint:PI1738|5end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_1659343..1659573_POSITIVE 328 173 132 60 7 pint:PI0258|5end_conjugative_transposon_protein,_TraG_249722..249952_POSITIVE 327 480 438 69 24 pint:PI0699|5end_conserved_hypothetical_protein_636647..636877_POSITIVE 322 519 471 81 13 pint:PI0621|5end_conserved_hypothetical_protein_570770..571000_POSITIVE 320 447 405 58 16 pint:PI0356|5end_hypothetical_protein_326642..326872_POSITIVE 318 170 122 92 42 pint:PI1248|5end_conserved_hypothetical_protein_1173214..1173444_POSITIVE 315 450 403 147 90 pint:PI1575|5end_LemA_protein_1501143..1501373_POSITIVE 315 480 440 66 30 pint:PI1438|5end_penicillin_tolerance_protein/steroid_biosynthesis_1356263..1356493_POSITIVE 314 480 442 222 186 pint:PI2076|5end_hypothetical_protein_2035403..2035633_POSITIVE 314 510 462 70 16 pint:PI1561|5end_conserved_hypothetical_protein;_possible_lipoprotein_1478717..1478947_POSITIVE 313 466 424 188 140 pint:PI2079|5end_conserved_hypothetical_protein;_possible_ATPase_2036715..2036945_POSITIVE 308 459 416 182 142 pint:PI0754|5end_possible_outer_membrane_receptor_683771..684001_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 369 166 128 59 12 pint:PI0042|3end_hypothetical_protein_43444..43594_POSITIVE 340 520 471 144 96 pint:PI0428|3end_hypothetical_protein_396321..396471_POSITIVE 338 174 143 104 73 pint:PI1776|3end_probable_peptidase_of_the_M22_family_(inactive?_chaperone?))_1709425..1709575_POSITIVE 328 173 132 60 7 pint:PI0257|3end_conjugative_transposon_protein,_TraF_249802..249952_POSITIVE 327 480 438 53 8 pint:PI0698|3end_conserved_hypothetical_protein_636711..636861_POSITIVE 326 176 132 137 96 pint:PI0189|3end_integrase_180437..180587_POSITIVE 323 179 131 43 2 pint:PI1245|3end_hypothetical_protein_1171492..1171642_POSITIVE 323 179 131 47 6 pint:PI1246|3end_conserved_hypothetical_protein;_possible_lipoprotein_1171496..1171646_POSITIVE 315 450 403 150 93 pint:PI1574|3end_conserved_hypothetical_protein_1501226..1501376_POSITIVE 315 480 440 130 94 pint:PI1437|3end_hypothetical_protein_1356407..1356557_POSITIVE 314 480 442 94 58 pint:PI2075|3end_conserved_hypothetical_protein_2035355..2035505_POSITIVE 312 500 454 141 87 pint:PI1716|3end_hypothetical_protein_1632006..1632156_POSITIVE 311 179 139 135 93 pint:PI1560|3end_integrase_1478265..1478415_POSITIVE 307 158 115 119 81 pint:PI1065|3end_hypothetical_protein_983650..983800_POSITIVE 302 170 125 58 12 pint:PI1743|3end_stationary-phase_survival_protein_1664930..1665080_POSITIVE 299 499 453 141 89 pint:PI1503|3end_30S_ribosomal_protein_S15_1423780..1423930_POSITIVE 298 179 136 118 73 pint:PI0575|3end_hypothetical_protein_520228..520378_POSITIVE 298 170 128 101 51 pint:PI0059|3end_peptide_chain_release_factor_RF-2_58171..58321_POSITIVE 295 489 442 51 6 pint:PI1898|3end_S-adenosyl-methyltransferase_1842444..1842594_POSITIVE 294 258 211 93 42 pint:PI0028|3end_aminopeptidase_32727..32877_POSITIVE