Origin IGS: aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgttctttatctttaaaatgttatacttgttaatacttttttacctgatggggttaggaatttacatacgaaagatgtgtcgcccatcaagtcgtcatacgttacatttattttatatccatcgttgctatgtctgtctttccaagcagcatcgcctgcttcgtattcgcttacacgttcccatacaaagcgcgtagaaggcagcttacttgttatttccacgtcgttttcccacacgtggacttcaaaggtggctttccaacttgtttgcccctccgtgtaggctgcgctgcctgccgatgcgtagccctcgacgcgtagcccggtgccgccatctttccccttggcagcatactgcttccattttttggattgcccggtgggttcgtcggcgttattatcgatgagcgaaagccacgtgcctcctgcataataccacgcttcatatttggctgccaccgtgcccggtgtccaatcaccacgatacagcacgttgggaatacgctctccgtcggagcttacccactcgaaatggcggctattcatgtatattttgtcgctcgacaggtggaatattgcattgcctttacttagcgaaaaatcgtgaatattcctgtacacctctattgtgccgccctcctccttcgaagtggtaatcatcgtaacgttcatacggttgcggttctgcgcagggtcaatgccgtgcgcgacgtcccacagcgaatt Mask Tandem Repeat Region ================================================ aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Find is-nt database================================================ Query_seq: PI0365:PI0366|PI0365:PI0366:hypothetical protein:conserved hypothetical protein:->->:336179..336904 726 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0365:PI0366|PI0365:PI0366:hypothetical protein:conserved hypothetical protein:->->:336179..336904 726 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0365:PI0366|PI0365:PI0366:hypothetical protein:conserved hypothetical protein:->->:336179..336904 726 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Predict ORF larger than 30AA ================================================ Protein_Len: 42 Strand: + Start: 354 End: 479 ................................................................................................................................................................................................................................................................................................................................................................. M Q K M E A V C C Q G E R W R H R A T R R G L R I G R Q R S L H G G A N K L E S H L ....................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 242 End: 511 ................................................................................................................................................................................................................................................. M V V I G H R A R W Q P N M K R G I M Q E A R G F R S S I I T P T N P P G N P K N G S S M L P R G K M A A P G Y A S R A ....................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 7 End: 711 ...... M W D V A H G I D P A Q N R N R M N V T M I T T S K E E G G T I E V Y R N I H D F S L S K G N A I F H L S S D K I Y M N ............... Protein_Len: 60 Strand: - Start: 533 End: 718 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q I P V H L R I R L L R H Q K S L C V Y C R H I Y F L H L T H R S S P R C M K R I Y I G L G M L Y F L I L L Y L M K F M ........ Protein_Len: 60 Strand: - Start: 447 End: 704 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. G E V R K T H S R T L S Y S A P S A A Q F S L C L L S P Y L I F T V Y S S K I P S V D K T H L N R V G D P L F T N V L M ...................... Protein_Len: 60 Strand: - Start: 409 End: 630 ........................................................................................................................................................................................................................................................................................................................................................................................................................ L P L C T P F G G K F D V H P F V V H F Y C T L Q R R R A K Y P F T Y A F V F C A I S S P F V S M A V I S I F Y I Y R M ................................................................................................ Protein_Len: 60 Strand: - Start: 323 End: 517 .................................................................................................................................................................................................................................................................................................................................. R V W R A I W F I S A T H Q W P S L H R C R A V R R P S R M P L C R L R C P P A F L N S L W R Q L G R T P F R R P F L M ................................................................................................................................................................................................................. Protein_Len: 35 Strand: - Start: 297 End: 401 ........................................................................................................................................................................................................................................................................................................ A P P V H S E S M S L L A S S G V P C D L F H F C Y A A L P F S P P M ..................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 136 End: 393 ....................................................................................................................................... V S L T N G V H Q I T T I P C R A R H C G F I F R P I I C S A R P K R E D I I V G V F G G P L G F F P L L I S G L P F M ............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: - Start: 123 End: 278 .......................................................................................................................... S K E S L L P L A I N W R D L S L I Y M F L R W K S H T L E S P S R I G L T S Y R P S Q V G P V T A A M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 74 End: 301 ......................................................................... R N K A L Y L C H L I G G T S R C F I C S Y G G N R T P L S R R L A Y E W R A T D H H N S V P C P P L W I H L T T N H M ......................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 3 End: 119 .. E S H S T A C P M S G A C F R L R I F T V I I V V E F S S P P V I S T Y L F M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: - Start: 1 End: 126 I R Q P V D R V A N V R R L V A V T H V N R H N G S R L L L A A C Y L H V P I N V M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 326 End: 355 .....................................................................................................................................................................................................................................................................................................................................ATTGCCCGGTGGGTTCGTCGGCGTTATTAT................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 91 HP_score: -7.4 Tail_Score: -5.15969 Start: 364 End: 382 Full_Region: cgccatctttcccct tggcagca tac tgcttcca ttttttggattgccc ...........................................................................................................................................................................................................................................................................................................................................................................tggcagcatactgcttcca........................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 48 HP_score: -4.4 Tail_Score: -3.15056 Start: 564 End: 585 Full_Region: gctatgtctgtcttt ccaagcag catcgc ctgcttcg tattcgcttacacgt ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccaagcagcatcgcctgcttcg............................................................................................................................................. Find igs database================================================ Query_seq: PI0365:PI0366|PI0365:PI0366:hypothetical protein:conserved hypothetical protein:->->:336179..336904 726 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Intra-Species Hit: Count: 1 Min: 1 Max: 726 Len: 726 Subject: pint_PI0365_PI0366|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[336179,336904]|726 HSP 1 e-value: 0.0 bit: 1439.0 Len: 726 Query Start:1 Query End:726 Subject Strand: POSITIVE Subject Start: 1 Subject End: 726 aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca aattcgctgtgggacgtcgcgcacggcattgaccctgcgcagaaccgcaaccgtatgaacgttacgatgattaccacttcgaaggaggagggcggcacaatagaggtgtacaggaatattcacgatttttcgctaagtaaaggcaatgcaatattccacctgtcgagcgacaaaatatacatgaatagccgccatttcgagtgggtaagctccgacggagagcgtattcccaacgtgctgtatcgtggtgattggacaccgggcacggtggcagccaaatatgaagcgtggtattatgcaggaggcacgtggctttcgctcatcgataataacgccgacgaacccaccgggcaatccaaaaaatggaagcagtatgctgccaaggggaaagatggcggcaccgggctacgcgtcgagggctacgcatcggcaggcagcgcagcctacacggaggggcaaacaagttggaaagccacctttgaagtccacgtgtgggaaaacgacgtggaaataacaagtaagctgccttctacgcgctttgtatgggaacgtgtaagcgaatacgaagcaggcgatgctgcttggaaagacagacatagcaacgatggatataaaataaatgtaacgtatgacgacttgatgggcgacacatctttcgtatgtaaattcctaaccccatcaggtaaaaaagtattaacaagtataacattttaaagataaagaaca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUCGCUGUGGGACGUCGCGCACGGCAUUGACCCUGCGCAGAACCGCAACCGUAUGAACGUUACGAUGAUUACCACUUCGAAGGAGGAGGGCGGCACAAUAGAGGUGUACAGGAAUAUUCACGAUUUUUCGCUAAGUAAAGGCAAUGCAAUAUUCCACCUGUCGAGCGACAAAAUAUACAUGAAUAGCCGCCAUUUCGAGUGGGUAAGCUCCGACGGAGAGCGUAUUCCCAACGUGCUGUAUCGUGGUGAUUGGACACCGGGCACGGUGGCAGCCAAAUAUGAAGCGUGGUAUUAUGCAGGAGGCACGUGGCUUUCGCUCAUCGAUAAUAACGCCGACGAACCCACCGGGCAAUCCAAAAAAUGGAAGCAGUAUGCUGCCAAGGGGAAAGAUGGCGGCACCGGGCUACGCGUCGAGGGCUACGCAUCGGCAGGCAGCGCAGCCUACACGGAGGGGCAAACAAGUUGGAAAGCCACCUUUGAAGUCCACGUGUGGGAAAACGACGUGGAAAUAACAAGUAAGCUGCCUUCUACGCGCUUUGUAUGGGAACGUGUAAGCGAAUACGAAGCAGGCGAUGCUGCUUGGAAAGACAGACAUAGCAACGAUGGAUAUAAAAUAAAUGUAACGUAUGACGACUUGAUGGGCGACACAUCUUUCGUAUGUAAAUUCCUAACCCCAUCAGGUAAAAAAGUAUUAACAAGUAUAACAUUUUAAAGAUAAAGAACA ...(((((((((....(((((((.((......)).))))).)).))))...(((....((((((((.......(((((.(((((......((((((.........(((((..((((((((((.((....))(((.......)))..)).))))))))...((((....))))...))))).......)))))).))))))))))...(((.(((.((..(((((.....(((.((((((...(((((....((((.(((((....)))))....)))).))))).(((((....)))))....)))))))))....)))))..)).......(((((.(...(((....(((..((((.....)))).((.....)).)))...)))...).)))))....))))))...(((((...((((.((((((.(.((((((....((((((((...((((....(((.(((....))).)))....)))).))))))))......((.((.......)).))..))))))........(((((((((.....(((....))).))))))))).).)))))).(..((......))..).))))..))))).............))))))))...)))........)))))...((((((...((((.........(((......)))......(((((....))))).))))...))))))........ (-227.99) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUUCUUUAUCUUUAAAAUGUUAUACUUGUUAAUACUUUUUUACCUGAUGGGGUUAGGAAUUUACAUACGAAAGAUGUGUCGCCCAUCAAGUCGUCAUACGUUACAUUUAUUUUAUAUCCAUCGUUGCUAUGUCUGUCUUUCCAAGCAGCAUCGCCUGCUUCGUAUUCGCUUACACGUUCCCAUACAAAGCGCGUAGAAGGCAGCUUACUUGUUAUUUCCACGUCGUUUUCCCACACGUGGACUUCAAAGGUGGCUUUCCAACUUGUUUGCCCCUCCGUGUAGGCUGCGCUGCCUGCCGAUGCGUAGCCCUCGACGCGUAGCCCGGUGCCGCCAUCUUUCCCCUUGGCAGCAUACUGCUUCCAUUUUUUGGAUUGCCCGGUGGGUUCGUCGGCGUUAUUAUCGAUGAGCGAAAGCCACGUGCCUCCUGCAUAAUACCACGCUUCAUAUUUGGCUGCCACCGUGCCCGGUGUCCAAUCACCACGAUACAGCACGUUGGGAAUACGCUCUCCGUCGGAGCUUACCCACUCGAAAUGGCGGCUAUUCAUGUAUAUUUUGUCGCUCGACAGGUGGAAUAUUGCAUUGCCUUUACUUAGCGAAAAAUCGUGAAUAUUCCUGUACACCUCUAUUGUGCCGCCCUCCUCCUUCGAAGUGGUAAUCAUCGUAACGUUCAUACGGUUGCGGUUCUGCGCAGGGUCAAUGCCGUGCGCGACGUCCCACAGCGAAUU ..................(((((.......))))).......((.((((((((.........(((((.(....)))))).).))))))).))(((...(((((((............((((.(((.(((.((((...........(((((.......((((.((((.((......)).....)))).))))..((((.(((((..............(((((((.((......)))))))))........(((((((((..........((((...(((((.((((((((...........))))))))....)))))....((((.((.((((..........)))).)).....((.((((.....))))..)))))).))))((((((..(....)..))))))..))))))))).))))).))))......................)))))..........((((......))))..)))).)))))).)))).....(((((.....)))))....(((((((((..((((((.((...(((((..((((((....)))))).((((((((.((((((.........))).......))))))))))).))))).....))...)))))).......)))).)))))........)))))))....)))((((.((..(((((((.(((....))).))))))..)..)).))))..... (-211.31) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 516 438 391 68 4 pint:PI0250|5end_hypothetical_protein_246946..247176_POSITIVE 466 440 396 211 157 pint:PI0285|5end_succinyltransferase_protein_270097..270327_POSITIVE 457 438 392 163 106 pint:PI1543|5end_hypothetical_protein_1462773..1463003_POSITIVE 438 440 393 62 1 pint:PI2017|5end_conserved_hypothetical_protein_1974862..1975092_POSITIVE 438 450 402 59 1 pint:PI1617|5end_hypothetical_protein_1542923..1543153_POSITIVE 437 434 396 91 51 pint:PI0751|5end_conserved_hypothetical_protein_680623..680853_POSITIVE 432 50 5 108 49 pint:PI0301|5end_probable_transposase_285672..285902_POSITIVE 429 450 401 96 31 pint:PI1784|5end_possible_dTDP-glucose_4,6-dehydratase,_NAD-dependent_epimerase/dehydratase_family_1716201..1716431_POSITIVE 429 430 382 193 134 pint:PI1180|5end_ferric_uptake_regulation_protein_1101892..1102122_POSITIVE 426 240 191 224 158 pint:PI0026|5end_two-component_system_response_regulator_29756..29986_POSITIVE 425 458 416 65 24 pint:PI0252|5end_conserved_hypothetical_protein_247761..247991_POSITIVE 420 457 411 187 130 pint:PI0737|5end_hypothetical_protein_671182..671412_POSITIVE 418 440 393 145 77 pint:PI1884|5end_conserved_hypothetical_protein_1826883..1827113_POSITIVE 418 420 372 91 25 pint:PI0668|5end_peptidyl-prolyl_cis-trans_isomerase_SlyD,_FKBP-type_(peptidylprolyl_isomerase)_610216..610446_POSITIVE 417 45 4 89 26 pint:PI1497|5end_LuxS_protein,_autoinducer_AI-2_production_protein_1417571..1417801_POSITIVE 416 439 394 192 141 pint:PI0088|5end_S-adenosylmethionine_synthetase_86663..86893_POSITIVE 415 443 402 224 181 pint:PI0596|5end_hypothetical_protein_546400..546630_POSITIVE 413 434 393 53 10 pint:PI0544|5end_hypoxanthine-guanine_phosphoribosyltransferase_(hypoxanthine_phosphoribosyltransferase)_495645..495875_POSITIVE 413 456 411 179 128 pint:PI0222|5end_conserved_hypothetical_protein_217808..218038_POSITIVE 410 438 392 230 180 pint:PI2033|5end_hypothetical_protein_1987068..1987298_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 516 438 391 68 4 pint:PI0249|3end_conserved_hypothetical_protein_247026..247176_POSITIVE 479 440 395 147 99 pint:PI0345|3end_conserved_hypothetical_protein_320809..320959_POSITIVE 451 439 393 140 74 pint:PI1716|3end_hypothetical_protein_1632006..1632156_POSITIVE 432 50 5 117 58 pint:PI0300|3end_transposase_285761..285911_POSITIVE 431 425 382 143 94 pint:PI0524|3end_meso-diaminopimelate_D-dehydrogenase_480849..480999_POSITIVE 418 437 391 79 36 pint:PI0047|3end_phosphomethylpyrimidine_kinase_46781..46931_POSITIVE 415 443 402 150 107 pint:PI0595|3end_conserved_hypothetical_protein_546406..546556_POSITIVE 413 434 393 123 80 pint:PI0542|3end_hypothetical_protein_495795..495945_POSITIVE 413 434 393 50 7 pint:PI0543|3end_adenylate_kinase_495722..495872_POSITIVE 413 456 411 87 36 pint:PI0221|3end_DNA_methylase,_site-specific_DNA-methyltransferase_(adenine-specific)_217796..217946_POSITIVE 409 457 411 71 15 pint:PI0654|3end_K+-dependent_Na+/Ca+_exchanger_related-protein_597223..597373_POSITIVE 407 450 402 124 50 pint:PI2137|3end_RNA_methylase_SpoU_family_2083807..2083957_POSITIVE 402 47 6 146 104 pint:PI0330|3end_hypothetical_protein_312545..312695_POSITIVE 402 448 401 118 71 pint:PI0166|3end_hypothetical_protein_161258..161408_POSITIVE 401 440 391 83 32 pint:PI1789|3end_hypothetical_protein_1719037..1719187_POSITIVE 399 48 5 73 26 pint:PI1136|3end_conserved_hypothetical_protein_1062541..1062691_POSITIVE 394 449 402 69 5 pint:PI0681|3end_hypothetical_protein_619256..619406_POSITIVE 392 279 235 127 78 pint:PI1664|3end_conserved_hypothetical_protein_1578090..1578240_POSITIVE 391 340 297 144 103 pint:PI1366|3end_conserved_hypothetical_protein;_possible_hydrolase,_HAD_superfamily_1286647..1286797_POSITIVE 390 440 394 114 55 pint:PI1559|3end_hypothetical_protein_1476972..1477122_POSITIVE