Origin IGS:
tctgacgcattcatagacgagcgggatgacatctacttttacagtgcgggcaacaacttcaatgttgccgataaggaaggtttcctgcgtatccgcaaaggaagcgacaaatgggatagcgattatctgttcaacctatcgaagacaaccataaaaggaataggcaaaacagggcagtatatgattaagtctttctatgcaggtaatggtattgtgtatagttgcgtgaaagtaacggatacagaatttggaatactcaagaaagacttccaacccgtgaaaatcgacatttggaacaaaaccatcgaaaaacttgatttgccaatgaccgacagcaatggctcttttgctataactcgctacaaggacttcatcgtctttggaatgacatgtaacaatggtacggggtattacacctacaataccaagacaggcgaatgctcgcaaaacccaattgttactgccataggagttccttcaagtttagtcgcatttgagtaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tttatcatgtctttttgcaaagttacaaacaaatacggataaaaacttgaattattgcaagtttttatccgtattactctcaaaaaagaaccaatagctccatgagaaatgtttttaatgagagtttactcaaatgcgactaaacttgaaggaactcctatggcagtaacaattgggttttgcgagcattcgcctgtcttggtattgtaggtgtaataccccgtaccattgttacatgtcattccaaagacgatgaagtccttgtagcgagttatagcaaaagagccattgctgtcggtcattggcaaatcaagtttttcgatggttttgttccaaatgtcgattttcacgggttggaagtctttcttgagtattccaaattctgtatccgttactttcacgcaactatacacaataccattacctgcatagaaagacttaatcatatactgccctgttttgcctattccttttatggttgtcttcgataggttgaacagataatcgctatcccatttgtcgcttcctttgcggatacgcaggaaaccttccttatcggcaacattgaagttgttgcccgcactgtaaaagtagatgtcatcccgctcgtctatgaatgcgtcaga

Mask Tandem Repeat Region ================================================
tctgacgcattcatagacgagcgggatgacatctacttttacagtgcgggcaacaacttcaatgttgccgataaggaaggtttcctgcgtatccgcaaaggaagcgacaaatgggatagcgattatctgttcaacctatcgaagacaaccataaaaggaataggcaaaacagggcagtatatgattaagtctttctatgcaggtaatggtattgtgtatagttgcgtgaaagtaacggatacagaatttggaatactcaagaaagacttccaacccgtgaaaatcgacatttggaacaaaaccatcgaaaaacttgatttgccaatgaccgacagcaatggctcttttgctataactcgctacaaggacttcatcgtctttggaatgacatgtaacaatggtacggggtattacacctacaataccaagacaggcgaatgctcgcaaaacccaattgttactgccataggagttccttcaagtttagtcgcatttgagtaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa

Find is-nt database================================================
Query_seq: PI0230:PI0231|PI0230:PI0231:hypothetical protein:transcriptional regulator:->->:228967..229592 626
tctgacgcattcatagacgagcgggatgacatctacttttacagtgcgggcaacaacttcaatgttgccgataaggaaggtttcctgcgtatccgcaaaggaagcgacaaatgggatagcgattatctgttcaacctatcgaagacaaccataaaaggaataggcaaaacagggcagtatatgattaagtctttctatgcaggtaatggtattgtgtatagttgcgtgaaagtaacggatacagaatttggaatactcaagaaagacttccaacccgtgaaaatcgacatttggaacaaaaccatcgaaaaacttgatttgccaatgaccgacagcaatggctcttttgctataactcgctacaaggacttcatcgtctttggaatgacatgtaacaatggtacggggtattacacctacaataccaagacaggcgaatgctcgcaaaacccaattgttactgccataggagttccttcaagtttagtcgcatttgagtaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI0230:PI0231|PI0230:PI0231:hypothetical protein:transcriptional regulator:->->:228967..229592 626
tctgacgcattcatagacgagcgggatgacatctacttttacagtgcgggcaacaacttcaatgttgccgataaggaaggtttcctgcgtatccgcaaaggaagcgacaaatgggatagcgattatctgttcaacctatcgaagacaaccataaaaggaataggcaaaacagggcagtatatgattaagtctttctatgcaggtaatggtattgtgtatagttgcgtgaaagtaacggatacagaatttggaatactcaagaaagacttccaacccgtgaaaatcgacatttggaacaaaaccatcgaaaaacttgatttgccaatgaccgacagcaatggctcttttgctataactcgctacaaggacttcatcgtctttggaatgacatgtaacaatggtacggggtattacacctacaataccaagacaggcgaatgctcgcaaaacccaattgttactgccataggagttccttcaagtttagtcgcatttgagtaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI0230:PI0231|PI0230:PI0231:hypothetical protein:transcriptional regulator:->->:228967..229592 626
tctgacgcattcatagacgagcgggatgacatctacttttacagtgcgggcaacaacttcaatgttgccgataaggaaggtttcctgcgtatccgcaaaggaagcgacaaatgggatagcgattatctgttcaacctatcgaagacaaccataaaaggaataggcaaaacagggcagtatatgattaagtctttctatgcaggtaatggtattgtgtatagttgcgtgaaagtaacggatacagaatttggaatactcaagaaagacttccaacccgtgaaaatcgacatttggaacaaaaccatcgaaaaacttgatttgccaatgaccgacagcaatggctcttttgctataactcgctacaaggacttcatcgtctttggaatgacatgtaacaatggtacggggtattacacctacaataccaagacaggcgaatgctcgcaaaacccaattgttactgccataggagttccttcaagtttagtcgcatttgagtaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 1	Min: 10	Max: 498	Len: 489
Subject: UniRef90_Q64YQ0 Cluster: Hypothetical protein; n=2; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis
HSP  1	e-value: 9.0E-8	bit: 59.3	Len: 489	Query Start:10	Query End:498	Subject Strand: null	Subject Start: 239	Subject End: 406
......... F  I  D  E  R  D  D  I  Y  F  Y  S  A  G  N  N  F  N  V  -  A  D  K  E  G  F  L  R  I  R  K  G  S  D  K  W  D  S  D  Y  L  F  N  L  S  K  T  T  I  K  G  I  G  K  T  G  Q  Y  M  I  K  S  F  Y  A  G  N  G  I  V  Y  S  C  V  K  V  -  -  -  -  T  D  T  E  F  G  I  L  K  K  D  F  Q  P  V  K  I  D  I  W  N  K  T  I  E  K  -  -  -  L  D  L  P  M  T  D  S  N  G  -  S  F  A  I  T  R  Y  K  D  F  I  V  F  G  M  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  E  C  S  Q  N  P  I  V  T  A  I  G  V  P  S  S  L  V  A  F  E ................................................................................................................................
......... F  M  D  E  K  K  D  I  Y  I  S  C  M  G  G  F  G  M  V  K  G  H  N  A  G  V  L  R  I  K  A  G  E  T  E  F  D  P  T  Y  Q  W  T  I  T  G  A  A  I  S  G  E  E  K  T  A  G  F  I  S  A  I  R  Y  V  G  N  G  K  A  Y  A  Y  I  N  M  P  G  Y  Y  K  P  G  E  Q  G  H  T  A  I  A  D  L  A  V  E  I  D  L  Y  N  K  T  M  K  K  V  Q  G  L  D  L  -  -  -  -  S  N  G  F  G  V  M  L  S  L  Y  K  G  S  M  L  I  G  N  S  S  A  K  A  K  G  I  Y  S  L  D  I  Q  T  G  E  V  S  K  E  P  I  L  T  T  V  G  N  P  I  L  C  Y  Y  F  E ................................................................................................................................


tctgacgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Predict ORF larger than 30AA ================================================
Protein_Len: 42	Strand: +	Start: 26	End: 151
......................... M  T  S  T  F  T  V  R  A  T  T  S  M  L  P  I  R  K  V  S  C  V  S  A  K  E  A  T  N  G  I  A  I  I  C  S  T  Y  R  R  Q  P ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 31	Strand: +	Start: 222	End: 314
............................................................................................................................................................................................................................. M  R  E  S  N  G  Y  R  I  W  N  T  Q  E  R  L  P  T  R  E  N  R  H  L  E  Q  N  H  R  K  T ........................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 13	End: 498
............ M  D  E  R  D  D  I  Y  F  Y  S  A  G  N  N  F  N  V  A  D  K  E  G  F  L  R  I  R  K  G  S  D  K  W  D  S  D  Y  L  F  N  L  S  K  T  T  I  K  G  I  G  K  T  G  Q  Y  M  I  K  S ................................................................................................................................
Protein_Len: 39	Strand: +	Start: 508	End: 624
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M  K  N  I  S  H  G  A  I  G  S  F  L  R  V  I  R  I  K  T  C  N  N  S  S  F  Y  P  Y  L  F  V  T  L  Q  K  D  M  I ..
Protein_Len: 30	Strand: -	Start: 487	End: 576
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D  C  K  L  L  S  E  N  F  V  N  R  M  S  S  N  T  R  K  Q  S  Y  Y  P  Y  F  S  A  I  M ..................................................
Protein_Len: 33	Strand: -	Start: 420	End: 518
................................................................................................................................................................................................................................................................................................................................................................................................................................... L  V  L  V  P  S  H  E  C  F  G  I  T  V  A  M  P  T  G  E  L  K  T  A  N  S  Y  V  R  M  L  F  M ............................................................................................................
Protein_Len: 52	Strand: -	Start: 198	End: 353
..................................................................................................................................................................................................... A  P  L  P  I  T  Y  L  Q  T  F  T  V  S  V  S  N  P  I  S  L  F  S  K  W  G  T  F  I  S  M  Q  F  L  V  M  S  F  S  S  K  G  I  V  S  L  L  P  E  K  A  M .................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 139	End: 447
.......................................................................................................................................... E  L  G  H  F  D  V  N  P  V  F  G  D  F  F  K  I  Q  W  H  G  V  A  I  A  R  K  S  Y  S  A  V  L  V  E  D  D  K  S  H  C  T  V  I  T  R  P  I  V  G  V  I  G  L  C  A  F  A  R  M ...................................................................................................................................................................................
Protein_Len: 42	Strand: -	Start: 1	End: 126
 R  V  C  E  Y  V  L  P  I  V  D  V  K  V  T  R  A  V  V  E  I  N  G  I  L  F  T  E  Q  T  D  A  F  S  A  V  F  P  I  A  I  M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

tctgacgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tctgacgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 57	HP_score: -2.6	Tail_Score: -4.254	Start: 265	End: 285	Full_Region: tttgttccaaatgtc gattttca cgggt tggaagtc tttcttgagtattcc
........................................................................................................................................................................................................................................................................gattttcacgggttggaagtc.....................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 100	HP_score: -16.8	Tail_Score: -4.59993	Start: 554	End: 593	Full_Region: CTTTTTTGAGAGTAA TACGGATAAAAACTTGCA ATAA TTCAAGTTTTTATCCGTA TTTGTTTGTAACTTT
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGATAAAAACTTGCAATAATTCAAGTTTTTATCCGTA.................................
TransTerm Strand: -	Conf: 100	HP_score: -16.8	Tail_Score: -3.25823	Start: 554	End: 593	Full_Region: aaagttacaaacaaa tacggataaaaacttgaa ttat tgcaagtttttatccgta ttactctcaaaaaag
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggataaaaacttgaattattgcaagtttttatccgta.................................

Find igs database================================================
Query_seq: PI0230:PI0231|PI0230:PI0231:hypothetical protein:transcriptional regulator:->->:228967..229592 626
tctgacgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
Intra-Species Hit: Count: 1	Min: 499	Max: 626	Len: 128
Subject: pint_PI0230_PI0231|hypothetical protein:transcriptional regulator|POSITIVE:POSITIVE|[228967,229592]|626
HSP  1	e-value: 3.0E-66	bit: 254.0	Len: 128	Query Start:499	Query End:626	Subject Strand: POSITIVE	Subject Start: 499	Subject End: 626
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaactctcattaaaaacatttctcatggagctattggttcttttttgagagtaatacggataaaaacttgcaataattcaagtttttatccgtatttgtttgtaactttgcaaaaagacatgataaa
HSP  2	e-value: 2.0E-6	bit: 56.0	Len: 44	Query Start:552	Query End:595	Subject Strand: NEGATIVE	Subject Start: 552	Subject End: 595
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatacggataaaaacttgcaataattcaagtttttatccgtatt...............................
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatacggataaaaacttgaattattgcaagtttttatccgtatt...............................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAACUCUCAUUAAAAACAUUUCUCAUGGAGCUAUUGGUUCUUUUUUGAGAGUAAUACGGAUAAAAACUUGCAAUAAUUCAAGUUUUUAUCCGUAUUUGUUUGUAACUUUGCAAAAAGACAUGAUAAA
.......((((...(((((..(((((.(((((.....)))))....)))))..((((((((((((((((((........)))))))))))))))))))))))....((((....))))..)))).... (-36.00)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UUUAUCAUGUCUUUUUGCAAAGUUACAAACAAAUACGGAUAAAAACUUGAAUUAUUGCAAGUUUUUAUCCGUAUUACUCUCAAAAAAGAACCAAUAGCUCCAUGAGAAAUGUUUUUAAUGAGAGUUUA
...............................((((((((((((((((((........))))))))))))))))))(((((((...((((((......(((...)))....))))))..)))))))... (-33.90)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
219	60	21	230	184	pint:PI0515|5end_conserved_hypothetical_protein_473045..473275_POSITIVE
218	61	23	39	4	pint:PI0292|5end_ISPg-3_transposase_fragment_275729..275959_POSITIVE
215	40	17	117	88	pint:PI2139|5end_cysteinyl-tRNA_synthetase_2085266..2085496_POSITIVE
204	61	25	63	16	pint:PI0155|5end_conserved_hypothetical_protein_148290..148520_POSITIVE
202	61	26	51	12	pint:PI1752|5end_conserved_hypothetical_protein_1680474..1680704_POSITIVE
201	68	24	134	88	pint:PI0801|5end_hypothetical_protein_739365..739595_POSITIVE
200	78	31	187	129	pint:PI0600|5end_bifunctional_purine_biosynthesis_protein,_5-aminoimidazole-4-carboxamide_ribonucleotide(AICAR)_transformylase/IMP_cyclohydrolase_547482..547712_POSITIVE
200	78	31	81	23	pint:PI0599|5end_hypothetical_protein_547376..547606_POSITIVE
197	38	8	81	54	pint:PI0363|5end_hypothetical_protein_332832..333062_POSITIVE
196	114	83	215	185	pint:PI0858|5end_carbamyl_phosphate_synthase,_large_subunit_790093..790323_POSITIVE
194	53	15	187	133	pint:PI2026|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_1979497..1979727_POSITIVE
194	115	73	159	110	pint:PI0692|5end_iron_compound_ABC_transporter,_permease_protein_627350..627580_POSITIVE
193	60	15	42	1	pint:PI0698|5end_conserved_hypothetical_protein_635372..635602_POSITIVE
193	60	20	77	19	pint:PI0223|5end_topoisomerase_IA_218377..218607_POSITIVE
192	71	35	41	6	pint:PI2098|5end_hypothetical_protein_2052106..2052336_POSITIVE
191	59	27	72	37	pint:PI1382|5end_hypothetical_protein_1303608..1303838_POSITIVE
191	72	31	87	42	pint:PI1081|5end_probable_endonuclease/resolvase_1000806..1001036_POSITIVE
187	48	27	180	159	pint:PI1859|5end_conserved_hypothetical_protein_1805394..1805624_POSITIVE
187	112	80	159	126	pint:PI1051|5end_hypothetical_protein_970053..970283_POSITIVE
187	64	25	101	54	pint:PI0287|5end_ISPg3-related_transposase_271898..272128_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
295	97	61	37	1	pint:PI0229|3end_hypothetical_protein_229404..229554_POSITIVE
243	60	18	100	55	pint:PI0316|3end_conserved_hypothetical_protein_299082..299232_POSITIVE
241	60	30	69	37	pint:PI1577|3end_conserved_hypothetical_protein_1503879..1504029_POSITIVE
218	118	71	110	56	pint:PI1884|3end_conserved_hypothetical_protein_1827457..1827607_POSITIVE
218	61	23	134	99	pint:PI0292|3end_ISPg-3_transposase_fragment_275904..276054_POSITIVE
205	64	25	146	111	pint:PI1409|3end_conserved_hypothetical_protein_1331561..1331711_POSITIVE
195	58	19	73	29	pint:PI1281|3end_hypothetical_protein_1196991..1197141_POSITIVE
195	81	49	104	73	pint:PI0631|3end_50S_ribosomal_protein_L25/general_stress_protein_578400..578550_POSITIVE
194	53	15	62	8	pint:PI2025|3end_conserved_hypothetical_protein_1979452..1979602_POSITIVE
194	60	23	45	1	pint:PI0514|3end_possible_cell_filamentation_protein_472940..473090_POSITIVE
193	60	20	62	4	pint:PI0222|3end_conserved_hypothetical_protein_218442..218592_POSITIVE
191	59	27	60	25	pint:PI1381|3end_conserved_hypothetical_protein_1303676..1303826_POSITIVE
191	72	31	84	39	pint:PI1080|3end_conserved_hypothetical_protein;_possible_outer_membrane_lipoprotein_1000883..1001033_POSITIVE
190	119	82	113	76	pint:PI0171|3end_hypothetical_protein_164085..164235_POSITIVE
190	119	82	64	27	pint:PI0169|3end_hypothetical_protein_164036..164186_POSITIVE
187	48	27	61	40	pint:PI1858|3end_conserved_hypothetical_protein_1805355..1805505_POSITIVE
187	64	27	149	120	pint:PI1368|3end_enolase_(phosphopyruvate_hydratase)_1289507..1289657_POSITIVE
186	113	87	51	23	pint:PI0088|3end_S-adenosylmethionine_synthetase_88032..88182_POSITIVE
184	60	16	90	38	pint:PI2117|3end_fumarate_reductase/succinate_dehydrogenase_flavoprotein_subunit,_C-terminal_2066684..2066834_POSITIVE
183	67	21	78	34	pint:PI1911|3end_ribosomal_protein_S20_1856235..1856385_POSITIVE