Origin IGS: taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tcgctaccaacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaccaaagaactttcagcatctgccttaagcaagaaaaagacaatccttcccccccactaagcttctactaaaccgagatttaataacagctacaattgaaaactaaaaagtaaattccaacactgtcgaaatgcccatataggagaaaaacagaaggagagaaaactttcaatttacttttatcagataacaacagtttta Mask Tandem Repeat Region ================================================ taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Find is-nt database================================================ Query_seq: PI0210:PI0211|PI0210:PI0211:hypothetical protein:hypothetical protein:->->:203859..204206 348 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0210:PI0211|PI0210:PI0211:hypothetical protein:hypothetical protein:->->:203859..204206 348 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0210:PI0211|PI0210:PI0211:hypothetical protein:hypothetical protein:->->:203859..204206 348 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 6 End: 119 ..... M L L S D K S K L K V F S P S V F L L Y G H F D S V G I Y F L V F N C S C Y ..................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 227 End: 322 .................................................................................................................................................................................................................................. M I T A L W R C E S G C L R C K T A A F T V Q N L R F W N A K Q .......................... Protein_Len: 44 Strand: + Start: 211 End: 342 .................................................................................................................................................................................................................. M I L L K S D N C A L A L R K R L F A M Q N S R F Y R A K P T L L E C K T I G F V M R W ...... Protein_Len: 38 Strand: + Start: 234 End: 347 ......................................................................................................................................................................................................................................... M R F G V A K A A V C D A K Q P L L P C K T Y A F G M Q N N R F C N A L V A . Protein_Len: 34 Strand: - Start: 177 End: 278 ................................................................................................................................................................................ P L H Q F N K P K T F I I R K F L S L Q A K A N R F R S N A I C F M ...................................................................... Protein_Len: 54 Strand: - Start: 134 End: 295 ..................................................................................................................................... Y F S L P P S P N D K E Q K L C I S F T R Q N Q L S L E R L F H Y S R K P T A F A A T Q S A F C G S K G H M ..................................................... taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -15.0 Tail_Score: -4.13767 Start: 255 End: 282 Full_Region: TTTGGCGTTGCGAAA GCGGCTGTTTGC GAT GCAAAACAGCCGC TTTTACCGTGCAAAA ..............................................................................................................................................................................................................................................................GCGGCTGTTTGCGATGCAAAACAGCCGC.................................................................. TransTerm Strand: - Conf: 100 HP_score: -15.0 Tail_Score: -3.53012 Start: 255 End: 282 Full_Region: ttttgcacggtaaaa gcggctgttttgc atc gcaaacagccgc tttcgcaacgccaaa ..............................................................................................................................................................................................................................................................gcggctgttttgcatcgcaaacagccgc.................................................................. Find igs database================================================ Query_seq: PI0210:PI0211|PI0210:PI0211:hypothetical protein:hypothetical protein:->->:203859..204206 348 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Intra-Species Hit: Count: 52 Min: 1 Max: 348 Len: 348 Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 0.0 bit: 648.0 Len: 348 Query Start:1 Query End:348 Subject Strand: POSITIVE Subject Start: 1 Subject End: 348 taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtnnnnnnnaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga taaaactgttgttatctgataaaagtaaattgaaagttttctctccttctgtttttctcctatatgggcatttcgacagtgttggaatttactttttagttttcaattgtagctgttattaaatctcggtttagtagaagcttagtgggggggaaggattgtctttttcttgcttaaggcagatgctgaaagttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggtagcga Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-53 bit: 210.0 Len: 137 Query Start:201 Query End:337 Subject Strand: POSITIVE Subject Start: 141 Subject End: 278 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgc........... ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc........... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 147 Query Start:195 Query End:341 Subject Strand: POSITIVE Subject Start: 73 Subject End: 220 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ..................................................................................................................................................................................................ctttgcttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttg....... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 141 Query Start:201 Query End:341 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 282 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttg....... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 140 Query Start:202 Query End:341 Subject Strand: POSITIVE Subject Start: 480 Subject End: 620 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... .........................................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttg....... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 141 Query Start:201 Query End:341 Subject Strand: POSITIVE Subject Start: 111 Subject End: 252 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ........................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttg....... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 137 Query Start:201 Query End:337 Subject Strand: POSITIVE Subject Start: 191 Subject End: 328 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttg-cgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgc........... ........................................................................................................................................................................................................ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgc........... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 131 Query Start:201 Query End:331 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 435 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................. ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................. Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 129 Query Start:202 Query End:330 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. .........................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 8.0E-41 bit: 168.0 Len: 140 Query Start:202 Query End:341 Subject Strand: POSITIVE Subject Start: 310 Subject End: 450 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... .........................................................................................................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttg....... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 8.0E-41 bit: 168.0 Len: 136 Query Start:200 Query End:335 Subject Strand: POSITIVE Subject Start: 49 Subject End: 185 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. .......................................................................................................................................................................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 147 Query Start:195 Query End:341 Subject Strand: POSITIVE Subject Start: 179 Subject End: 326 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ..................................................................................................................................................................................................ctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttg....... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 139 Query Start:200 Query End:338 Subject Strand: POSITIVE Subject Start: 165 Subject End: 304 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcg.......... .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcg.......... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 134 Query Start:202 Query End:335 Subject Strand: POSITIVE Subject Start: 215 Subject End: 349 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. .........................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat............. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 141 Query Start:201 Query End:341 Subject Strand: NEGATIVE Subject Start: 336 Subject End: 477 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ........................................................................................................................................................................................................ttttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttg....... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 133 Query Start:202 Query End:334 Subject Strand: POSITIVE Subject Start: 60 Subject End: 193 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. .........................................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa.............. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 136 Query Start:200 Query End:335 Subject Strand: POSITIVE Subject Start: 145 Subject End: 281 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 132 Query Start:204 Query End:335 Subject Strand: POSITIVE Subject Start: 190 Subject End: 322 ...........................................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. ...........................................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 102 Query Start:240 Query End:341 Subject Strand: NEGATIVE Subject Start: 46 Subject End: 148 ...............................................................................................................................................................................................................................................tttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ...............................................................................................................................................................................................................................................tttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttg....... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 138 Query Start:200 Query End:337 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 228 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgc........... .......................................................................................................................................................................................................gttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgc........... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 141 Query Start:201 Query End:341 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 225 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ........................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttg....... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 133 Query Start:202 Query End:334 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 384 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaa.............. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 140 Query Start:202 Query End:341 Subject Strand: NEGATIVE Subject Start: 376 Subject End: 516 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... .........................................................................................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttg....... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 136 Query Start:201 Query End:336 Subject Strand: NEGATIVE Subject Start: 691 Subject End: 827 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatg............ ........................................................................................................................................................................................................ttttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatg............ Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 136 Query Start:203 Query End:338 Subject Strand: POSITIVE Subject Start: 170 Subject End: 306 ..........................................................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcg.......... ..........................................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcg.......... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 128 Query Start:195 Query End:322 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 327 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaa.......................... ..................................................................................................................................................................................................cttttgttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa.......................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 133 Query Start:202 Query End:334 Subject Strand: POSITIVE Subject Start: 149 Subject End: 282 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. .........................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa.............. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 137 Query Start:205 Query End:341 Subject Strand: POSITIVE Subject Start: 105 Subject End: 242 ............................................................................................................................................................................................................gtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ............................................................................................................................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttg....... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 105 Query Start:240 Query End:344 Subject Strand: POSITIVE Subject Start: 184 Subject End: 289 ...............................................................................................................................................................................................................................................tttggcgttgcgaaagcggctgtttgcgat-gcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggta.... ...............................................................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacgctggta.... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 34 Query Start:252 Query End:285 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 230 ...........................................................................................................................................................................................................................................................aaagcggctgttt-gcgatgcaaaacagccgcttt............................................................... ...........................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttt............................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 128 Query Start:203 Query End:330 Subject Strand: POSITIVE Subject Start: 113 Subject End: 241 ..........................................................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttg-cgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. ..........................................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.................. Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 132 Query Start:200 Query End:331 Subject Strand: POSITIVE Subject Start: 113 Subject End: 245 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................. .......................................................................................................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 129 Query Start:202 Query End:330 Subject Strand: POSITIVE Subject Start: 200 Subject End: 329 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. .........................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt.................. Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 7.0E-32 bit: 139.0 Len: 141 Query Start:195 Query End:335 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 368 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. ..................................................................................................................................................................................................ctttggttttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat............. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 132 Query Start:200 Query End:331 Subject Strand: POSITIVE Subject Start: 143 Subject End: 275 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................. .......................................................................................................................................................................................................gttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................. Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 132 Query Start:199 Query End:330 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 243 ......................................................................................................................................................................................................ggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. ......................................................................................................................................................................................................ggttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 119 Query Start:223 Query End:341 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 215 ..............................................................................................................................................................................................................................aaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ..............................................................................................................................................................................................................................aaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttg....... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 113 Query Start:223 Query End:335 Subject Strand: POSITIVE Subject Start: 763 Subject End: 876 ..............................................................................................................................................................................................................................aaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat............. ..............................................................................................................................................................................................................................aaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataat............. Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 7.0E-29 bit: 129.0 Len: 132 Query Start:200 Query End:331 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 229 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................. .......................................................................................................................................................................................................gttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttg................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 142 Query Start:200 Query End:341 Subject Strand: POSITIVE Subject Start: 112 Subject End: 254 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... .......................................................................................................................................................................................................gttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttg....... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-27 bit: 123.0 Len: 133 Query Start:198 Query End:330 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 312 .....................................................................................................................................................................................................tggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. .....................................................................................................................................................................................................tggttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt.................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 136 Query Start:195 Query End:330 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 310 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. ..................................................................................................................................................................................................ctttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggtttt.................. Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 7.0E-26 bit: 119.0 Len: 129 Query Start:206 Query End:334 Subject Strand: POSITIVE Subject Start: 507 Subject End: 636 .............................................................................................................................................................................................................taaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcg--gctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. .............................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaact-tttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa.............. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 138 Query Start:197 Query End:334 Subject Strand: NEGATIVE Subject Start: 407 Subject End: 545 ....................................................................................................................................................................................................ttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. ....................................................................................................................................................................................................ttggttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa.............. Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 149 Query Start:193 Query End:341 Subject Strand: POSITIVE Subject Start: 133 Subject End: 282 ................................................................................................................................................................................................ttctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttgcgat-gcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ................................................................................................................................................................................................ttctttggttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttg....... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 34 Query Start:252 Query End:285 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 226 ...........................................................................................................................................................................................................................................................aaagcggctgttt-gcgatgcaaaacagccgcttt............................................................... ...........................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttt............................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 143 Query Start:201 Query End:343 Subject Strand: POSITIVE Subject Start: 155 Subject End: 298 ........................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggt..... ........................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggt..... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 147 Query Start:195 Query End:341 Subject Strand: POSITIVE Subject Start: 85 Subject End: 232 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ..................................................................................................................................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttg....... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 118 Query Start:202 Query End:319 Subject Strand: POSITIVE Subject Start: 257 Subject End: 375 .........................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaa............................. .........................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa............................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 142 Query Start:200 Query End:341 Subject Strand: POSITIVE Subject Start: 9 Subject End: 151 .......................................................................................................................................................................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... .......................................................................................................................................................................................................gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttg....... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 141 Query Start:194 Query End:334 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 178 .................................................................................................................................................................................................tctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttg-cgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. .................................................................................................................................................................................................tctttggttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaa.............. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 132 Query Start:199 Query End:330 Subject Strand: POSITIVE Subject Start: 213 Subject End: 345 ......................................................................................................................................................................................................ggttttgtaaagataatt-ctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.................. ......................................................................................................................................................................................................ggttttgtaaagataatttcgctgaaaaac-gataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................. Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 139 Query Start:203 Query End:341 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 390 ..........................................................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctg-tttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....... ..........................................................................................................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttg....... HSP 2 e-value: 5.0E-8 bit: 60.0 Len: 37 Query Start:252 Query End:288 Subject Strand: POSITIVE Subject Start: 307 Subject End: 344 ...........................................................................................................................................................................................................................................................aaagcggctgttt-gcgatgcaaaacagccgcttttac............................................................ ...........................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttttac............................................................ Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 140 Query Start:195 Query End:334 Subject Strand: NEGATIVE Subject Start: 328 Subject End: 468 ..................................................................................................................................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa.............. ..................................................................................................................................................................................................ctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaa.............. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAACUGUUGUUAUCUGAUAAAAGUAAAUUGAAAGUUUUCUCUCCUUCUGUUUUUCUCCUAUAUGGGCAUUUCGACAGUGUUGGAAUUUACUUUUUAGUUUUCAAUUGUAGCUGUUAUUAAAUCUCGGUUUAGUAGAAGCUUAGUGGGGGGGAAGGAUUGUCUUUUUCUUGCUUAAGGCAGAUGCUGAAAGUUCUUUGGUUUUGUAAAGAUAAUUCUCUUAAAAAGUGAUAACUGCGCUUUGGCGUUGCGAAAGCGGCUGUUUGCGAUGCAAAACAGCCGCUUUUACCGUGCAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUGUAAUGCGUUGGUAGCGA ..........((((((......................(((((((((.(((..(((((.(((..((((.((((.(((((((((((((...(((....))))))))))....))))))...))))))))...))).)))))..))).)))))))))(((((((((((..((.((((..(((....)))..)))).....))......)))))))))))...........))))))..(((((..((((...((((((((((((((((...)).))))))))))))))....(((((((((((...(((((.....)))))...)))))))))))..))))..).)))). (-103.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCGCUACCAACGCAUUACAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUGUUUUGCAUCGCAAACAGCCGCUUUCGCAACGCCAAAGCGCAGUUAUCACUUUUUAAGAGAAUUAUCUUUACAAAACCAAAGAACUUUCAGCAUCUGCCUUAAGCAAGAAAAAGACAAUCCUUCCCCCCCACUAAGCUUCUACUAAACCGAGAUUUAAUAACAGCUACAAUUGAAAACUAAAAAGUAAAUUCCAACACUGUCGAAAUGCCCAUAUAGGAGAAAAACAGAAGGAGAGAAAACUUUCAAUUUACUUUUAUCAGAUAACAACAGUUUUA .((((......((....((((((((((.(((((........)))))))))))))))....(..(((((((((((((.((...)))))))))))))))..)...))...))))..((((((..(((((((..(((...(((((........)))))...)))....(((((.....)).))).........................((((..((.((((......)))).))..))))....)))))))...((((((((((.......((((.......((......))......))))...(((((....))))).))))))))))....)))))).......... (-74.32) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 922 310 262 106 58 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 922 310 262 106 58 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 920 280 231 186 136 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 920 280 231 98 48 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 886 260 211 208 159 pint:PI0202|5end_DNA_helicase_191753..191983_POSITIVE 882 270 221 200 150 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 874 260 211 154 105 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 872 320 271 72 23 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 870 280 231 175 122 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 862 308 262 231 185 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 855 290 241 59 9 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 851 270 221 88 38 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 850 310 262 51 3 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 836 330 281 71 22 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 835 290 241 59 9 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 835 290 241 67 17 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 835 290 241 59 9 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 822 270 221 170 120 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 818 276 233 45 1 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 812 260 211 229 180 pint:PI0056|5end_conserved_hypothetical_protein;_possible_DNA_uptake_protein_54967..55197_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 920 280 231 131 81 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 899 290 241 135 85 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 886 260 211 110 61 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 866 270 221 125 75 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 852 260 211 150 101 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 850 270 221 81 31 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 835 290 241 141 91 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 802 270 221 121 71 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 793 270 221 121 71 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 779 290 241 151 101 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 767 290 241 141 91 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 767 250 201 146 97 pint:PI0099|3end_hypothetical_protein_95777..95927_POSITIVE 764 260 211 120 71 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 755 290 241 141 91 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 729 290 241 141 91 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 724 330 281 141 92 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 724 330 281 54 5 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 724 330 281 54 5 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 724 330 281 82 33 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 711 298 251 50 2 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE