Origin IGS: taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tccataaacgaatctcttgcacataatatgatgtttttagtttatctgacgtttgcaaatatagcaaaaaaaaagcaatcacacaagtttgtgtgatacaagtttgtgtgataccaacttgtagagccaatattcaaaacataaattcgatgcaaaaataacgctaatatgttatttgtaagatacttaaagaaagaattgattacgattcgatatgcttataatgagaaagaagtgaagtttcttcggcaagttcttacaccaaattcacgctattccatgaataaaaagaagctaataaaagtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaactaatactcttcaacaacgatgtatggcaaaaaataaaaaggagcttta Mask Tandem Repeat Region ================================================ taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Find is-nt database================================================ Query_seq: PI0010:PI0011|PI0010:PI0011:conserved hypothetical protein:conserved hypothetical protein:->->:11740..12281 542 taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0010:PI0011|PI0010:PI0011:conserved hypothetical protein:conserved hypothetical protein:->->:11740..12281 542 taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0010:PI0011|PI0010:PI0011:conserved hypothetical protein:conserved hypothetical protein:->->:11740..12281 542 taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 83 End: 172 .................................................................................. M R F D V A K A A L L R C K T Y A F T V Q N S R F W N A K Q .................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 15 End: 200 .............. M F C H T S L L K S I S F V K I I P L K S D N C A L T L R K R L F C D A K P T L L P C K T A A F G T Q N N R F C N T L M ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 334 End: 498 ............................................................................................................................................................................................................................................................................................................................................. M V I N S F F K Y L T N N I L A L F L H R I Y V L N I G S T S W Y H T N L Y H T N L C D C F F F A I F A N V R ............................................ Protein_Len: 44 Strand: + Start: 410 End: 541 ......................................................................................................................................................................................................................................................................................................................................................................................................................... M L A L Q V G I T Q T C I T Q T C V I A F F L L Y L Q T S D K L K T S Y Y V Q E I R L W . Protein_Len: 30 Strand: - Start: 450 End: 539 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V F K H S Q K K K A I N A F T L Y V L F M M N H A L S E N M ... Protein_Len: 54 Strand: - Start: 237 End: 398 ............................................................................................................................................................................................................................................ V K I L K K K N M S Y R S N P T L V Q R L F K V E K E N Y A Y R I T I L E K K L Y R V F L M N A N N K C R M ................................................................................................................................................ Protein_Len: 60 Strand: - Start: 2 End: 193 . I K Q W V D N N F L I L K T F I I G N F L S L Q A K V N R F R S K Q S A F G V S K G H L V A A K P V C F L L N Q L V S M ............................................................................................................................................................................................................................................................................................................................................................. taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 456 End: 485 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGTGATTGCTTTTTTTTTGCTATATT......................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 475 End: 504 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTATATTTGCAAACGTCAGATAAACT...................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 85 HP_score: -9.0 Tail_Score: -4.07568 Start: 104 End: 154 Full_Region: TTTGACGTTGCGAAA GCGGCTCTTTTGCGATGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAACGCAAAA .......................................................................................................GCGGCTCTTTTGCGATGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC.................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 78 HP_score: -9.0 Tail_Score: -3.54424 Start: 104 End: 154 Full_Region: ttttgcgttccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcatcgcaaaagagccgc tttcgcaacgtcaaa .......................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgc.................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 95 HP_score: -4.4 Tail_Score: -6.19443 Start: 444 End: 468 Full_Region: GTATCACACAAACTT GTATCACACA AACT TGTGTGATTGC TTTTTTTTTGCTATA ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACACAAACTTGTGTGATTGC.......................................................................... TransTerm Strand: + Conf: 87 HP_score: -8.5 Tail_Score: -4.20371 Start: 447 End: 464 Full_Region: TCACACAAACTTGTA TCACACA AACT TGTGTGA TTGCTTTTTTTTTGC ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACAAACTTGTGTGA.............................................................................. Find igs database================================================ Query_seq: PI0010:PI0011|PI0010:PI0011:conserved hypothetical protein:conserved hypothetical protein:->->:11740..12281 542 taaagctcctttttattttttgccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Intra-Species Hit: Count: 56 Min: 22 Max: 542 Len: 521 Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 0.0 bit: 979.0 Len: 521 Query Start:22 Query End:542 Subject Strand: POSITIVE Subject Start: 22 Subject End: 542 .....................gccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgcnnnnnnnnngctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga .....................gccatacatcgttgttgaagagtattagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatcttacaaataacatattagcgttatttttgcatcgaatttatgttttgaatattggctctacaagttggtatcacacaaacttgtatcacacaaacttgtgtgattgctttttttttgctatatttgcaaacgtcagataaactaaaaacatcatattatgtgcaagagattcgtttatgga Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-104 bit: 379.0 Len: 315 Query Start:50 Query End:364 Subject Strand: POSITIVE Subject Start: 111 Subject End: 425 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaacttgccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtatctta.................................................................................................................................................................................. .................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttagatagttaagtaataattatctttacgaaaaatatttacacctttattaccttcttttcgttcattgcataacgtgaatttggtgtaagaactaaacgaataaacttcacttctttttgattataagcatattgaattataatcaattctttctttaagcatctta.................................................................................................................................................................................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 8.0E-73 bit: 276.0 Len: 207 Query Start:50 Query End:256 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 225 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttt.............................................................................................................................................................................................................................................................................................. .................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttacacatttattactttctttt.............................................................................................................................................................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 5.0E-68 bit: 260.0 Len: 195 Query Start:51 Query End:245 Subject Strand: POSITIVE Subject Start: 200 Subject End: 394 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttat......................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttat......................................................................................................................................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-66 bit: 254.0 Len: 148 Query Start:52 Query End:199 Subject Strand: POSITIVE Subject Start: 170 Subject End: 317 ...................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttag....................................................................................................................................................................................................................................................................................................................................................... ...................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttag....................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-65 bit: 250.0 Len: 134 Query Start:51 Query End:184 Subject Strand: POSITIVE Subject Start: 149 Subject End: 282 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 43 Query Start:308 Query End:350 Subject Strand: POSITIVE Subject Start: 409 Subject End: 451 ...................................................................................................................................................................................................................................................................................................................cttctttctcattataagcatatcgaatcgtaatcaattcttt................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................cttctttctgattatcagcatatcaaatcataatcaattcttt................................................................................................................................................................................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-62 bit: 242.0 Len: 198 Query Start:46 Query End:243 Subject Strand: POSITIVE Subject Start: 305 Subject End: 502 .............................................ttagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacactttt........................................................................................................................................................................................................................................................................................................... .............................................ttagctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgataacaagagaattacacaataggtgtgtctgtgaaaaatatttacactttt........................................................................................................................................................................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 135 Query Start:50 Query End:184 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 282 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 195 Query Start:50 Query End:244 Subject Strand: NEGATIVE Subject Start: 241 Subject End: 435 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacactttta.......................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacaccttta.......................................................................................................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 3.0E-60 bit: 234.0 Len: 134 Query Start:51 Query End:184 Subject Strand: POSITIVE Subject Start: 60 Subject End: 193 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 4.0E-59 bit: 230.0 Len: 144 Query Start:51 Query End:194 Subject Strand: POSITIVE Subject Start: 215 Subject End: 358 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatg............................................................................................................................................................................................................................................................................................................................................................ ..................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatg............................................................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-58 bit: 228.0 Len: 191 Query Start:49 Query End:239 Subject Strand: NEGATIVE Subject Start: 39 Subject End: 229 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-58 bit: 228.0 Len: 135 Query Start:51 Query End:185 Subject Strand: POSITIVE Subject Start: 480 Subject End: 614 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-58 bit: 226.0 Len: 134 Query Start:48 Query End:181 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 229 ...............................................agttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... ...............................................agttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-56 bit: 222.0 Len: 132 Query Start:49 Query End:180 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 242 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 1.0E-56 bit: 222.0 Len: 144 Query Start:49 Query End:192 Subject Strand: POSITIVE Subject Start: 165 Subject End: 308 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctga.............................................................................................................................................................................................................................................................................................................................................................. ................................................gttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctga.............................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 139 Query Start:222 Query End:360 Subject Strand: POSITIVE Subject Start: 338 Subject End: 478 .............................................................................................................................................................................................................................tgtgaaaaatatttacacttttattagcttctttttattcatggaatagcgtgaatttggtgtaagaactt--gccgaagaaacttcacttctttctcattataagcatatcgaatcgtaatcaattctttctttaagtat...................................................................................................................................................................................... .............................................................................................................................................................................................................................tgtgaaaaatatttacatctttattaccttcttttcgtgcataagatagcgtgaaatgggtgtaagattttaggacgaagacacttcacttctttttgattataagcctattaaatcataaacaatactttctttatgtat...................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 4.0E-56 bit: 220.0 Len: 139 Query Start:49 Query End:187 Subject Strand: POSITIVE Subject Start: 145 Subject End: 283 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatac................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatac................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 6.0E-55 bit: 216.0 Len: 193 Query Start:54 Query End:246 Subject Strand: POSITIVE Subject Start: 105 Subject End: 297 .....................................................gtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttatt........................................................................................................................................................................................................................................................................................................ .....................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctatt........................................................................................................................................................................................................................................................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 6.0E-55 bit: 216.0 Len: 133 Query Start:49 Query End:181 Subject Strand: POSITIVE Subject Start: 113 Subject End: 245 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 144 Query Start:51 Query End:194 Subject Strand: NEGATIVE Subject Start: 241 Subject End: 384 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatg............................................................................................................................................................................................................................................................................................................................................................ ..................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatg............................................................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 207 Query Start:50 Query End:256 Subject Strand: NEGATIVE Subject Start: 621 Subject End: 827 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttt.............................................................................................................................................................................................................................................................................................. .................................................ttttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgatagatagtgaattatgcaacagttatgtttgtgaaaaatatttacacgcatattatcttctttt.............................................................................................................................................................................................................................................................................................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 143 Query Start:51 Query End:193 Subject Strand: POSITIVE Subject Start: 257 Subject End: 399 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgat............................................................................................................................................................................................................................................................................................................................................................. ..................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgat............................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 138 Query Start:48 Query End:185 Subject Strand: POSITIVE Subject Start: 111 Subject End: 248 ...............................................agttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... ...............................................agttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 190 Query Start:50 Query End:239 Subject Strand: POSITIVE Subject Start: 185 Subject End: 374 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 211 Query Start:50 Query End:260 Subject Strand: POSITIVE Subject Start: 141 Subject End: 351 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaa-gcttgtgaaaaatatttacacttttattagcttctttttatt.......................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaa-cggtaacacttgtgaaaaatatttacacctttattgccttctttttatt.......................................................................................................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 135 Query Start:51 Query End:185 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 516 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 145 Query Start:49 Query End:193 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 542 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgat............................................................................................................................................................................................................................................................................................................................................................. ................................................gttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgat............................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 137 Query Start:49 Query End:185 Subject Strand: POSITIVE Subject Start: 9 Subject End: 145 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:50 Query End:181 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 218 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 150 Query Start:89 Query End:238 Subject Strand: POSITIVE Subject Start: 108 Subject End: 257 ........................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ ........................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 137 Query Start:49 Query End:185 Subject Strand: POSITIVE Subject Start: 200 Subject End: 335 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 5.0E-40 bit: 167.0 Len: 136 Query Start:50 Query End:185 Subject Strand: POSITIVE Subject Start: 191 Subject End: 326 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 139 Query Start:50 Query End:188 Subject Strand: POSITIVE Subject Start: 91 Subject End: 229 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacg.................................................................................................................................................................................................................................................................................................................................................................. .................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacg.................................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 189 Query Start:50 Query End:238 Subject Strand: POSITIVE Subject Start: 155 Subject End: 343 .................................................ttttgtaaagataattccgttaa-aaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ .................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 186 Query Start:53 Query End:238 Subject Strand: POSITIVE Subject Start: 190 Subject End: 375 ....................................................tgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ ....................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 130 Query Start:51 Query End:180 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ..................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... ..................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 136 Query Start:49 Query End:184 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 172 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 8.0E-36 bit: 153.0 Len: 145 Query Start:49 Query End:193 Subject Strand: POSITIVE Subject Start: 214 Subject End: 358 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgat............................................................................................................................................................................................................................................................................................................................................................. ................................................gttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaatacgttgat............................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 187 Query Start:52 Query End:238 Subject Strand: POSITIVE Subject Start: 113 Subject End: 299 ...................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ ...................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 151 Query Start:97 Query End:247 Subject Strand: POSITIVE Subject Start: 135 Subject End: 285 ................................................................................................tgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttatta....................................................................................................................................................................................................................................................................................................... ................................................................................................tgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgcaaagtgttgatagtgagagagttaagtgaaagatactcttgcgaaaaatatttacacttttatta....................................................................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 136 Query Start:49 Query End:184 Subject Strand: NEGATIVE Subject Start: 328 Subject End: 463 ................................................gttttgtaaagataattccgttaa-aaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 7.0E-33 bit: 143.0 Len: 136 Query Start:50 Query End:185 Subject Strand: POSITIVE Subject Start: 79 Subject End: 214 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat..................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 7.0E-33 bit: 143.0 Len: 192 Query Start:49 Query End:240 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 322 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacact.............................................................................................................................................................................................................................................................................................................. ................................................gttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatgtatagatagttaccgaacagttatgcttgtgaaaaatatttacact.............................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:101 Query End:135 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ....................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 210 Query Start:47 Query End:256 Subject Strand: POSITIVE Subject Start: 141 Subject End: 350 ..............................................tagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttattagcttctttt.............................................................................................................................................................................................................................................................................................. ..............................................tagttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttacacttttattatcttctttt.............................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:101 Query End:135 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ....................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 132 Query Start:50 Query End:181 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 477 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg......................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 123 Query Start:50 Query End:172 Subject Strand: POSITIVE Subject Start: 226 Subject End: 348 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa.................................................................................................................................................................................................................................................................................................................................................................................. .................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa.................................................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 196 Query Start:50 Query End:245 Subject Strand: NEGATIVE Subject Start: 109 Subject End: 304 .................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttat......................................................................................................................................................................................................................................................................................................... .................................................ttttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataacacgctgacagatagcttgttacgcaatggatatacttgtgaaaaatatttacacttttat......................................................................................................................................................................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 136 Query Start:49 Query End:184 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 188 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 130 Query Start:55 Query End:184 Subject Strand: POSITIVE Subject Start: 507 Subject End: 636 ......................................................taaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................................................................................................................................................................................................................................................................................................................................................... ......................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 9.0E-17 bit: 89.7 Len: 141 Query Start:46 Query End:186 Subject Strand: POSITIVE Subject Start: 140 Subject End: 280 .............................................ttagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaata.................................................................................................................................................................................................................................................................................................................................................................... .............................................ttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 132 Query Start:49 Query End:180 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 310 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... ................................................gttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt.......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:101 Query End:136 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 ....................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt...................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt...................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 187 Query Start:52 Query End:238 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 390 ...................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ ...................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 144 Query Start:96 Query End:239 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 191 ...............................................................................................ttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... ...............................................................................................ttgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttacac............................................................................................................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 144 Query Start:49 Query End:192 Subject Strand: NEGATIVE Subject Start: 221 Subject End: 363 ................................................gttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctga.............................................................................................................................................................................................................................................................................................................................................................. ................................................gttttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactga.............................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 4.0E-13 bit: 77.8 Len: 115 Query Start:72 Query End:186 Subject Strand: POSITIVE Subject Start: 763 Subject End: 877 .......................................................................aaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaata.................................................................................................................................................................................................................................................................................................................................................................... .......................................................................aaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:101 Query End:135 Subject Strand: NEGATIVE Subject Start: 792 Subject End: 826 ....................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................aaagcggctgttttgcgttgcaaaacctacgcttt....................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 6.0E-12 bit: 73.8 Len: 85 Query Start:152 Query End:236 Subject Strand: POSITIVE Subject Start: 249 Subject End: 333 .......................................................................................................................................................cgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatattta.................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................cgcttttggaatgcaaaacaataggttttgtaatgcgctgatgatgagattgttaggtgaaagttattgttgtgaaaaatattta.................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:101 Query End:136 Subject Strand: POSITIVE Subject Start: 220 Subject End: 255 ....................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt...................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt...................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCAUACAUCGUUGUUGAAGAGUAUUAGUUUUGUAAAGAUAAUUCCGUUAAAAAGUGAUAACUGCGCUUUGACGUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGUAAUACGCUGAUGGUUAGAUAGUUACGUAAUAGGUAAGCUUGUGAAAAAUAUUUACACUUUUAUUAGCUUCUUUUUAUUCAUGGAAUAGCGUGAAUUUGGUGUAAGAACUUGCCGAAGAAACUUCACUUCUUUCUCAUUAUAAGCAUAUCGAAUCGUAAUCAAUUCUUUCUUUAAGUAUCUUACAAAUAACAUAUUAGCGUUAUUUUUGCAUCGAAUUUAUGUUUUGAAUAUUGGCUCUACAAGUUGGUAUCACACAAACUUGUAUCACACAAACUUGUGUGAUUGCUUUUUUUUUGCUAUAUUUGCAAACGUCAGAUAAACUAAAAACAUCAUAUUAUGUGCAAGAGAUUCGUUUAUGGA .(((((...((...(((.(((((........(((((((((((...((((((..(((....)))..(.((((.((((.(((((((((((.(((((((....((((.......))))....))))))).))))))))))).)))))))).)....(..(((((((.(..((...((..(((..((((((.....((((.((((((((......((((((((...(((.(((...(((((....))))).)))...)))..))))))))........((((........)))).......)))))))).))))....))))))....)))..))...))..).)))))))...)...)))))))))))))))))(((((.......)))))......))))).)))...((((((((((((..((((.....))))..)))))))).))))..((((((((..(((((((....).))))))........((((......))))))))))))..))..))))). (-127.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCAUAAACGAAUCUCUUGCACAUAAUAUGAUGUUUUUAGUUUAUCUGACGUUUGCAAAUAUAGCAAAAAAAAAGCAAUCACACAAGUUUGUGUGAUACAAGUUUGUGUGAUACCAACUUGUAGAGCCAAUAUUCAAAACAUAAAUUCGAUGCAAAAAUAACGCUAAUAUGUUAUUUGUAAGAUACUUAAAGAAAGAAUUGAUUACGAUUCGAUAUGCUUAUAAUGAGAAAGAAGUGAAGUUUCUUCGGCAAGUUCUUACACCAAAUUCACGCUAUUCCAUGAAUAAAAAGAAGCUAAUAAAAGUGUAAAUAUUUUUCACAAGCUUACCUAUUACGUAACUAUCUAACCAUCAGCGUAUUACAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAACGUCAAAGCGCAGUUAUCACUUUUUAACGGAAUUAUCUUUACAAAACUAAUACUCUUCAACAACGAUGUAUGGC .(((((..((....(((((((.(((((((((((((((.(((...((((...(((((.......))))).........(((((((((..(((((...)))))..))))))))).........))))......))).))))))).........((.........))...)))))))).)))))))....((((((..((((((....))))))((((((((.......(((.((....(((.((.(....).)).))).(((.....(((((.(......).)))))......(((((...(((((((....)))))))....))))).........))).)).))).......))))))))......((....((((((((((.(.(((((((((.((((((...((((((.(...).))))))...)))))).))))))))).).)))).))))))...((((........)))))).....))))))......................))...))))). (-112.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 985 110 61 181 132 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 961 130 81 231 182 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 961 130 81 70 21 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 961 130 81 58 9 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 938 140 91 80 31 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 938 140 91 52 3 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 938 140 91 52 3 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 928 120 71 60 11 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 919 120 73 48 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 914 140 91 80 31 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 914 140 91 206 157 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 909 140 91 88 39 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 909 140 91 80 31 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 885 130 81 70 21 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 885 140 91 80 31 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 883 140 91 129 80 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 881 150 104 47 1 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 879 110 61 50 1 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 866 140 91 80 31 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 863 120 71 202 153 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1009 110 61 92 43 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 961 130 81 53 4 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 961 110 61 132 83 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 957 120 71 142 93 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 912 119 71 151 103 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 908 150 101 132 83 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 907 110 61 136 87 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 903 129 81 151 103 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 887 120 73 116 69 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 883 140 91 63 14 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 873 160 111 55 6 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 853 129 81 151 103 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 846 129 81 151 103 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 844 160 112 49 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 834 110 61 132 83 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 828 110 61 142 93 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 804 170 121 65 16 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 800 99 51 121 73 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 766 89 41 151 103 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 760 100 51 122 73 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE