Origin IGS: tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaaacaagccagcagaaaatatctatccgttctaagctttccgcaaatggcttttcttctctatttcggggtgaaaacaatgtggtacttacagttccatttggtgtgtgatagacttgaatcgtcattggctttacttaccattgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taatttctttttaattgaagaataaataagtaataaatctgcatgctgtgaagtatgcagatttttttatctcttttttcagaaaataggccatgaaaaacacctgattttttgaccgcactttatagcaatagcgtgcttataaaaaccgtacgctatgcgtatggaatcaaagagcttaagcggtcaacataaaaaatcctcactatataatgaataaggctgacaaccaaaattcaagatataggaggataagtcaatggtaagtaaagccaatgacgattcaagtctatcacacaccaaatggaactgtaagtaccacattgttttcaccccgaaatagagaagaaaagccatttgcggaaagcttagaacggatagatattttctgctggcttgttttccgcctttgttttccaacagccaaatcaagccatcctatgataaaataagagttgtttaccgaattgtgtagtgtaaacaatggaaagatagttttttaccaactattttgtctactatgtcttgagaaaatggtgagtctaatgaggcagcatcatatcgcaaaatacattgattttcgaccgcacttttttgtagcttatcggcttttatgttcttagttaataaaaaagcttggagaatattccaagcttttatcaagatttagacgaaaactca Mask Tandem Repeat Region ================================================ tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaaacaagccagcagaaaatatctatccgttctaagctttccgcaaatggcttttcttctctatttcggggtgaaaacaatgtggtacttacagttccatttggtgtgtgatagacttgaatcgtcattggctttacttaccattgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Find is-nt database================================================ Query_seq: AA02478:AA02479|AA02478:AA02479:PTS system, N-acetylglucosamine-specific enzyme IIABC:outer membrane protein 34:->->:1714593..1715273 681 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaaacaagccagcagaaaatatctatccgttctaagctttccgcaaatggcttttcttctctatttcggggtgaaaacaatgtggtacttacagttccatttggtgtgtgatagacttgaatcgtcattggctttacttaccattgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA02478:AA02479|AA02478:AA02479:PTS system, N-acetylglucosamine-specific enzyme IIABC:outer membrane protein 34:->->:1714593..1715273 681 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaaacaagccagcagaaaatatctatccgttctaagctttccgcaaatggcttttcttctctatttcggggtgaaaacaatgtggtacttacagttccatttggtgtgtgatagacttgaatcgtcattggctttacttaccattgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 72 Min: 282 Max: 422 Len: 141 Subject: gi|19704998|ref|NP_602493.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 2.0E-9 bit: 59.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q A I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|34762847|ref|ZP_00143832.1| Transposase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] HSP 1 e-value: 2.0E-9 bit: 59.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q A I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|34762874|ref|ZP_00143858.1| Transposase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] HSP 1 e-value: 2.0E-9 bit: 59.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q A I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|34763825|ref|ZP_00144735.1| Transposase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] HSP 1 e-value: 2.0E-9 bit: 59.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q A I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7P6W7 Cluster: Transposase; n=6; Fusobacterium nucleatum|Rep: Transposase - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 2.0E-9 bit: 59.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q A I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|34762685|ref|ZP_00143676.1| Transposase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] HSP 1 e-value: 5.0E-9 bit: 58.2 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N S L A H T K W N C K Y H I V F T P K Y R R Q V I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|27467629|ref|NP_764266.1| IS605/IS200-like transposase [Staphylococcus epidermidis ATCC 12228] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|57866571|ref|YP_188187.1| transposase, IS200 family, truncation [Staphylococcus epidermidis RP62A] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|27467931|ref|NP_764568.1| IS605/IS200-like transposase [Staphylococcus epidermidis ATCC 12228] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 41 Subject End: 76 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|27468210|ref|NP_764847.1| IS605/IS200-like transposase [Staphylococcus epidermidis ATCC 12228] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 41 Subject End: 76 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F V P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|27469126|ref|NP_765763.1| IS605/IS200-like transposase [Staphylococcus epidermidis ATCC 12228] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 41 Subject End: 76 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|57650577|ref|YP_186670.1| transposase, IS200 family [Staphylococcus aureus subsp. aureus COL] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K K D ............................................................................................................................................................................................................................................................................... Subject: gi|57867084|ref|YP_188749.1| transposase, IS200 family [Staphylococcus epidermidis RP62A] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F V P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|70726897|ref|YP_253811.1| IS605/IS200-like transposase [Staphylococcus haemolyticus JCSC1435] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|70727596|ref|YP_254512.1| IS605/IS200-like transposase [Staphylococcus haemolyticus JCSC1435] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|87162231|ref|YP_494006.1| transposase, IS200 family [Staphylococcus aureus subsp. aureus USA300] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K K D ............................................................................................................................................................................................................................................................................... Subject: gi|18309121|ref|NP_561055.1| probable transposase [Clostridium perfringens str. 13] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N S S L A H S K W N C K Y H I V F A P K Y R R Q I I Y G K I K S D ..................................................................................................................................................................................................................................................................................... Subject: gi|88195606|ref|YP_500412.1| transposase, IS200 family [Staphylococcus aureus subsp. aureus NCTC 8325] HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K K D ............................................................................................................................................................................................................................................................................... Subject: UniRef90_Q5HQF3 Cluster: Transposase, IS200 family, truncation; n=2; Staphylococcus epidermidis|Rep: Transposase, IS200 family, truncation - Staphylococcus epidermidis (strain ATCC 35984 / RP62A) HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8CMW6 Cluster: IS605/IS200-like transposase; n=12; Staphylococcus|Rep: IS605/IS200-like transposase - Staphylococcus epidermidis (strain ATCC 12228) HSP 1 e-value: 1.0E-8 bit: 57.0 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 41 Subject End: 76 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V I Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: gi|15896768|ref|NP_350117.1| IS605/IS200-like transposase [Clostridium acetobutylicum ATCC 824] HSP 1 e-value: 1.0E-8 bit: 56.6 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N S S L A H S K W N C K Y H I V F A P K Y R R Q I I Y G K I K A D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q97DE6 Cluster: IS605/IS200-like transposase; n=2; Clostridium|Rep: IS605/IS200-like transposase - Clostridium acetobutylicum HSP 1 e-value: 1.0E-8 bit: 56.6 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N S S L A H S K W N C K Y H I V F A P K Y R R Q I I Y G K I K A D ..................................................................................................................................................................................................................................................................................... Subject: gi|57865653|ref|YP_189791.1| transposase, IS200 family [Staphylococcus epidermidis RP62A] HSP 1 e-value: 2.0E-8 bit: 56.2 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. S S D T N S L A H T K W N C K Y H I V F A P K Y R R Q V L Y G K I K R D ............................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9LAP3 Cluster: Putative transposase; n=1; Enterococcus faecium|Rep: Putative transposase - Enterococcus faecium (Streptococcus faecium) HSP 1 e-value: 2.0E-8 bit: 56.2 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D S N S L S H T R W N C K Y H I V F A P K Y R R K V A Y G K I K Q D ..................................................................................................................................................................................................................................................................................... Subject: IS|ISEnfa200.aa1 HSP 1 e-value: 2.0E-8 bit: 56.2 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D S N S L S H T R W N C K Y H I V F A P K Y R R K V A Y G K I K Q D ..................................................................................................................................................................................................................................................................................... Subject: gi|67916270|ref|ZP_00509987.1| Transposase IS200-like [Clostridium thermocellum ATCC 27405] HSP 1 e-value: 3.0E-8 bit: 55.5 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 3 Subject End: 36 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N A S L A H T Q W N C K Y H I V F A P K Y R R Q V I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|67917066|ref|ZP_00510743.1| Transposase IS200-like [Clostridium thermocellum ATCC 27405] HSP 1 e-value: 3.0E-8 bit: 55.5 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 3 Subject End: 36 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N A S L A H T Q W N C K Y H I V F V P K Y R R Q V I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q4CC50 Cluster: Transposase IS200-like; n=2; Clostridium thermocellum ATCC 27405|Rep: Transposase IS200-like - Clostridium thermocellum ATCC 27405 HSP 1 e-value: 3.0E-8 bit: 55.5 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 3 Subject End: 36 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D N A S L A H T Q W N C K Y H I V F V P K Y R R Q V I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|109645759|ref|ZP_01369679.1| transposase IS200-like [Desulfitobacterium hafniense DCB-2] HSP 1 e-value: 7.0E-8 bit: 54.3 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T E S L A H T R W N C K Y H I V F A P K Y R R Q I I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q190E6 Cluster: Transposase IS200-like; n=1; Desulfitobacterium hafniense DCB-2|Rep: Transposase IS200-like - Desulfitobacterium hafniense (strain DCB-2) HSP 1 e-value: 7.0E-8 bit: 54.3 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T E S L A H T R W N C K Y H I V F A P K Y R R Q I I Y G K I K K D ..................................................................................................................................................................................................................................................................................... Subject: gi|86559572|ref|YP_473393.1| IS1469-like transposase [Clostridium perfringens] HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: gi|86559666|ref|YP_473486.1| IS1469 transposase [Clostridium perfringens] HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: gi|110803745|ref|YP_697711.1| IS1469, transposase [Clostridium perfringens SM101] HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8RPA5 Cluster: Transposase; n=4; Clostridium perfringens|Rep: Transposase - Clostridium perfringens HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: IS|IS200S.aa1 HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: IS|IS1469.aa1 HSP 1 e-value: 2.0E-7 bit: 52.8 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D T N S L A H T K W N C K Y H I V F A P K H R R K E I Y G E K K Q E ..................................................................................................................................................................................................................................................................................... Subject: gi|55823053|ref|YP_141494.1| IS657, transposase, IS200 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 120 Query Start:282 Query End:401 Subject Strand: null Subject Start: 5 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ........................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................... N N S L A H T T W N C K Y H I V F A P K Y R R Q I I Y G K Y K A S I G Q I F L L L C ........................................................................................................................................................................................................................................................................................ Subject: gi|89090147|ref|ZP_01163199.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090152|ref|ZP_01163204.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090223|ref|ZP_01163275.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090445|ref|ZP_01163493.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090616|ref|ZP_01163660.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090632|ref|ZP_01163676.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090831|ref|ZP_01163868.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89090962|ref|ZP_01163993.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89091286|ref|ZP_01164301.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89091422|ref|ZP_01164428.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89091766|ref|ZP_01164736.1| transposase, IS200 family [Lactobacillus reuteri JCM 1112] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|92088312|ref|ZP_01273274.1| Transposase IS200-like [Lactobacillus reuteri 100-23] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|92088435|ref|ZP_01273397.1| Transposase IS200-like [Lactobacillus reuteri 100-23] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|92089309|ref|ZP_01274257.1| Transposase IS200-like [Lactobacillus reuteri 100-23] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|92089455|ref|ZP_01274397.1| Transposase IS200-like [Lactobacillus reuteri 100-23] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|92090369|ref|ZP_01275229.1| Transposase IS200-like [Lactobacillus reuteri 100-23] HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1U5L2 Cluster: Transposase IS200-like; n=6; Lactobacillus reuteri|Rep: Transposase IS200-like - Lactobacillus reuteri 100-23 HSP 1 e-value: 3.0E-7 bit: 52.4 Len: 129 Query Start:282 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 46 ......................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ............................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... A N K L N S L A H T K W L C K Y H I V F I P K Y R R K A I F N Q Y R R D L R D Y I R L L C ............................................................................................................................................................................................................................................................................... Subject: gi|89894138|ref|YP_517625.1| hypothetical protein DSY1392 [Desulfitobacterium hafniense Y51] HSP 1 e-value: 4.0E-7 bit: 51.6 Len: 102 Query Start:309 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 35 .................................................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R ............................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... A N K E Y S L A H T K W M C K Y H I V F T P K Y R R K I I Y N Q Y R ............................................................................................................................................................................................................................................................................... Subject: gi|89896738|ref|YP_520225.1| hypothetical protein DSY3992 [Desulfitobacterium hafniense Y51] HSP 1 e-value: 4.0E-7 bit: 51.6 Len: 102 Query Start:309 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 35 .................................................................................................................................................................................................................................................................................................................... A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R ............................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... A N K E Y S L A H T K W M C K Y H I V F T P K Y R R K I I Y N Q Y R ............................................................................................................................................................................................................................................................................... Subject: gi|118726035|ref|ZP_01574668.1| transposase IS200-like [Clostridium cellulolyticum H10] HSP 1 e-value: 4.0E-7 bit: 51.6 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D S E S L A H S K Y N C K Y H I V F A P K Y R R Q V I Y G K I K A D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0UX97 Cluster: Transposase IS200-like; n=1; Clostridium cellulolyticum H10|Rep: Transposase IS200-like - Clostridium cellulolyticum H10 HSP 1 e-value: 4.0E-7 bit: 51.6 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D S E S L A H S K Y N C K Y H I V F A P K Y R R Q V I Y G K I K A D ..................................................................................................................................................................................................................................................................................... Subject: gi|118581263|ref|YP_902513.1| transposase IS200-family protein [Pelobacter propionicus DSM 2379] HSP 1 e-value: 7.0E-7 bit: 50.8 Len: 126 Query Start:282 Query End:407 Subject Strand: null Subject Start: 2 Subject End: 43 ......................................................................................................................................................................................................................................................................................... N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D R Y F L L A C .................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................... D D A Q S L C H S K W D C K Y H I V W V P K C R R K V L Y G R I R K H L A D L L H C .................................................................................................................................................................................................................................................................................. Subject: UniRef90_A1ASY5 Cluster: Transposase IS200-family protein; n=1; Pelobacter propionicus DSM 2379|Rep: Transposase IS200-family protein - Pelobacter propionicus DSM 2379 HSP 1 e-value: 7.0E-7 bit: 50.8 Len: 126 Query Start:282 Query End:407 Subject Strand: null Subject Start: 2 Subject End: 43 ......................................................................................................................................................................................................................................................................................... N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D R Y F L L A C .................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................................................................................................... D D A Q S L C H S K W D C K Y H I V W V P K C R R K V L Y G R I R K H L A D L L H C .................................................................................................................................................................................................................................................................................. Subject: gi|55821779|ref|YP_140221.1| IS657, transposase, IS200 family [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 120 Query Start:282 Query End:401 Subject Strand: null Subject Start: 5 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ........................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................... N N S L A H T T W N C K Y H I V F A P K Y R R Q I I Y G K Y K A S I G Q I F R L L C ........................................................................................................................................................................................................................................................................................ Subject: gi|55823697|ref|YP_142138.1| IS657, transposase, IS200 family [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 120 Query Start:282 Query End:401 Subject Strand: null Subject Start: 5 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ........................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................... N N S L A H T T W N C K Y H I V F A P K Y R R Q I I Y G K Y K A S I G Q I F R L L C ........................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q5LY04 Cluster: IS657, transposase, IS200 family; n=4; Streptococcus thermophilus|Rep: IS657, transposase, IS200 family - Streptococcus thermophilus (strain CNRZ 1066) HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 120 Query Start:282 Query End:401 Subject Strand: null Subject Start: 5 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ........................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................... N N S L A H T T W N C K Y H I V F A P K Y R R Q I I Y G K Y K A S I G Q I F R L L C ........................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q2WFW4 Cluster: Putative transposase; n=1; Clostridium aminovalericum|Rep: Putative transposase - Clostridium aminovalericum HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D K N T L S H T T W E C K Y H I V F A P K Y R R Q V I Y G N I K A D ..................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8L0S1 Cluster: Transposase of IS200 family; n=2; Streptococcus|Rep: Transposase of IS200 family - Streptococcus suis HSP 1 e-value: 2.0E-6 bit: 49.7 Len: 117 Query Start:306 Query End:422 Subject Strand: null Subject Start: 1 Subject End: 36 ................................................................................................................................................................................................................................................................................................................. M V S K A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T ................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................. M T Q K A H - - - S L S H T K W L C K Y H I V F T P K Y R R K I I Y N Q Y R S ................................................................................................................................................................................................................................................................... Subject: UniRef90_Q5GN39 Cluster: Putative IS605/IS200-like transposase; n=2; Bacillus sphaericus|Rep: Putative IS605/IS200-like transposase - Bacillus sphaericus HSP 1 e-value: 2.0E-6 bit: 49.7 Len: 102 Query Start:303 Query End:404 Subject Strand: null Subject Start: 2 Subject End: 35 .............................................................................................................................................................................................................................................................................................................. D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ..................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. D S K S L A H T T W N C K Y H I V F V P K Y R R Q V I Y R K I K A E ..................................................................................................................................................................................................................................................................................... Subject: gi|30250170|ref|NP_842240.1| Transposase IS200 like [Nitrosomonas europaea ATCC 19718] HSP 1 e-value: 2.0E-6 bit: 49.3 Len: 114 Query Start:309 Query End:422 Subject Strand: null Subject Start: 1 Subject End: 38 .................................................................................................................................................................................................................................................................................................................... M V S K A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R ................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... M T F T T K E Y Q S L S H T R W D C K Y H V V F I P K R R K K R I F G M L R ................................................................................................................................................................................................................................................................... Subject: UniRef90_Q82SR9 Cluster: Transposase IS200 like; n=1; Nitrosomonas europaea|Rep: Transposase IS200 like - Nitrosomonas europaea HSP 1 e-value: 2.0E-6 bit: 49.3 Len: 114 Query Start:309 Query End:422 Subject Strand: null Subject Start: 1 Subject End: 38 .................................................................................................................................................................................................................................................................................................................... M V S K A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R ................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................... M T F T T K E Y Q S L S H T R W D C K Y H V V F I P K R R K K R I F G M L R ................................................................................................................................................................................................................................................................... Subject: gi|55821755|ref|YP_140197.1| IS657, transposase, IS200 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 3.0E-6 bit: 48.9 Len: 123 Query Start:282 Query End:404 Subject Strand: null Subject Start: 4 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ..................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... D N N S L G H T T W N C K Y H I V F A Q K Y R R Q I I Y G K Y K A S I G Q I F R L L C ..................................................................................................................................................................................................................................................................................... Subject: gi|55823674|ref|YP_142115.1| IS657, transposase, IS200 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 3.0E-6 bit: 48.9 Len: 123 Query Start:282 Query End:404 Subject Strand: null Subject Start: 4 Subject End: 46 ......................................................................................................................................................................................................................................................................................... D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D - - R Y F L L A C ..................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................... D N N S L G H T T W N C K Y H I V F A Q K Y R R Q I I Y G K Y K A S I G Q I F R L L C ..................................................................................................................................................................................................................................................................................... Subject: gi|90961038|ref|YP_534954.1| Transposase ISLasa3a, IS200 family [Lactobacillus salivarius subsp. salivarius UCC118] HSP 1 e-value: 4.0E-6 bit: 48.5 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. A N K L N S L A H T T W L C K Y H I V F T P K Y R R K I I Y Y Q Y R K D ............................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1WVQ5 Cluster: Transposase ISLasa3a, IS200 family; n=1; Lactobacillus salivarius subsp. salivarius UCC118|Rep: Transposase ISLasa3a, IS200 family - Lactobacillus salivarius subsp. salivarius (strain UCC118) HSP 1 e-value: 4.0E-6 bit: 48.5 Len: 108 Query Start:303 Query End:410 Subject Strand: null Subject Start: 2 Subject End: 37 .............................................................................................................................................................................................................................................................................................................. A N D D S S L S H T K W N C K Y H I V F T P K * R R K A I C G K L R T D ............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................. A N K L N S L A H T T W L C K Y H I V F T P K Y R R K I I Y Y Q Y R K D ............................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: AA02478:AA02479|AA02478:AA02479:PTS system, N-acetylglucosamine-specific enzyme IIABC:outer membrane protein 34:->->:1714593..1715273 681 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 16 End: 219 ............... M L I K A W N I L Q A F L L T K N I K A D K L Q K S A V E N Q C I L R Y D A A S L D S P F S Q D I V D K I V G K K L S F .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 189 End: 386 ............................................................................................................................................................................................ M F P L F T L H N S V N N S Y F I I G W L D L A V G K Q R R K T S Q Q K I S I R S K L S A N G F S S L F R G E N N V V L ....................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 250 End: 492 ......................................................................................................................................................................................................................................................... M I W L L E N K G G K Q A S R K Y L S V L S F P Q M A F L L Y F G V K T M W Y L Q F H L V C D R L E S S L A L L T I D L ............................................................................................................................................................................................. Protein_Len: 36 Strand: + Start: 561 End: 668 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R S K N Q V F F M A Y F L K K E I K K S A Y F T A C R F I T Y L F F N ............. Protein_Len: 58 Strand: - Start: 233 End: 406 ........................................................................................................................................................................................................................................ K I M P H S S K A T P F C L R F V L W C F I D I R E L S E A F P K E E R N R P S F L T T S V T G N P T H Y V Q I T M ................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 210 End: 326 ................................................................................................................................................................................................................. V I R Y V V R I K D Y S P K I Q S N S F L P P F C A L L F Y R D T R L K G C M ................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: - Start: 62 End: 226 ............................................................. S C L L R Y A V F F H P R F D I Y K A I H H Q R M L S V M K E L C L L C F L Q Y F V I K G N N V S C L E T F M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 97 End: 126 ................................................................................................GTCGAAAATCAATGTATTTTGCGATATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 89 HP_score: -8.6 Tail_Score: -4.41241 Start: 28 End: 47 Full_Region: ttagttaataaaaaa gcttggag aata ttccaagc ttttatcaagattta ...........................gcttggagaatattccaagc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 93 HP_score: -8.8 Tail_Score: -4.82901 Start: 515 End: 533 Full_Region: TTAAGCTCTTTGATT CCATACGC ATA GCGTACGG TTTTTATAAGCACGC ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATACGCATAGCGTACGG.................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -10.4 Tail_Score: -5.82281 Start: 621 End: 644 Full_Region: taaataagtaataaa tctgcatgct gtga agtatgcaga tttttttatctcttt ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctgcatgctgtgaagtatgcaga..................................... Find igs database================================================ Query_seq: AA02478:AA02479|AA02478:AA02479:PTS system, N-acetylglucosamine-specific enzyme IIABC:outer membrane protein 34:->->:1714593..1715273 681 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Intra-Species Hit: Count: 1 Min: 1 Max: 681 Len: 681 Subject: aact_AA02478_AA02479|PTS system, N-acetylglucosamine-specific enzyme IIABC:outer membrane protein 34|POSITIVE:POSITIVE|[1714593,1715273]|681 HSP 1 e-value: 1.0E-157 bit: 557.0 Len: 281 Query Start:1 Query End:281 Subject Strand: POSITIVE Subject Start: 1 Subject End: 281 tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaa................................................................................................................................................................................................................................................................................................................................................................................................................ tgagttttcgtctaaatcttgataaaagcttggaatattctccaagcttttttattaactaagaacataaaagccgataagctacaaaaaagtgcggtcgaaaatcaatgtattttgcgatatgatgctgcctcattagactcaccattttctcaagacatagtagacaaaatagttggtaaaaaactatctttccattgtttacactacacaattcggtaaacaactcttattttatcataggatggcttgatttggctgttggaaaacaaaggcggaaa................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-132 bit: 472.0 Len: 259 Query Start:423 Query End:681 Subject Strand: POSITIVE Subject Start: 423 Subject End: 681 ......................................................................................................................................................................................................................................................................................................................................................................................................................................tgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagatnnnnnnntctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta ......................................................................................................................................................................................................................................................................................................................................................................................................................................tgacttatcctcctatatcttgaattttggttgtcagccttattcattatatagtgaggattttttatgttgaccgcttaagctctttgattccatacgcatagcgtacggtttttataagcacgctattgctataaagtgcggtcaaaaaatcaggtgtttttcatggcctattttctgaaaaaagagataaaaaaatctgcatacttcacagcatgcagatttattacttatttattcttcaattaaaaagaaatta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAGUUUUCGUCUAAAUCUUGAUAAAAGCUUGGAAUAUUCUCCAAGCUUUUUUAUUAACUAAGAACAUAAAAGCCGAUAAGCUACAAAAAAGUGCGGUCGAAAAUCAAUGUAUUUUGCGAUAUGAUGCUGCCUCAUUAGACUCACCAUUUUCUCAAGACAUAGUAGACAAAAUAGUUGGUAAAAAACUAUCUUUCCAUUGUUUACACUACACAAUUCGGUAAACAACUCUUAUUUUAUCAUAGGAUGGCUUGAUUUGGCUGUUGGAAAACAAAGGCGGAAAACAAGCCAGCAGAAAAUAUCUAUCCGUUCUAAGCUUUCCGCAAAUGGCUUUUCUUCUCUAUUUCGGGGUGAAAACAAUGUGGUACUUACAGUUCCAUUUGGUGUGUGAUAGACUUGAAUCGUCAUUGGCUUUACUUACCAUUGACUUAUCCUCCUAUAUCUUGAAUUUUGGUUGUCAGCCUUAUUCAUUAUAUAGUGAGGAUUUUUUAUGUUGACCGCUUAAGCUCUUUGAUUCCAUACGCAUAGCGUACGGUUUUUAUAAGCACGCUAUUGCUAUAAAGUGCGGUCAAAAAAUCAGGUGUUUUUCAUGGCCUAUUUUCUGAAAAAAGAGAUAAAAAAAUCUGCAUACUUCACAGCAUGCAGAUUUAUUACUUAUUUAUUCUUCAAUUAAAAAGAAAUUA (((.((((((........((((((((((((((((......))))))))..))))))))..............((((....(((.......))).))))))))))))).(((((((((.((...((((.((..((....))..)).)))).)).)))))....((((((((...((.((((.....)))).)).....))))))))..))))......(((((....(((((.(((((..(((((.(((((((.(((.(((.(((.....))).))).)))..)))))))...((((((((((....((((.(((((.((((((.......((((.((((......)))).)))).(((.((((.((.....)).))))))).)))).)).)).))))))).((((.(((.........))).))))..((((((((((((..(((((...(((.....)))..)))))..)))))).))))))........((((((((....(((..(.((..((.(((((...))))).))..)).)..)))..((....))........))))))))......)))))))))).....)))))....))))).)))))......((((((((((.((....)).)))))))))).)))))......(((((........))))).... (-169.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUUCUUUUUAAUUGAAGAAUAAAUAAGUAAUAAAUCUGCAUGCUGUGAAGUAUGCAGAUUUUUUUAUCUCUUUUUUCAGAAAAUAGGCCAUGAAAAACACCUGAUUUUUUGACCGCACUUUAUAGCAAUAGCGUGCUUAUAAAAACCGUACGCUAUGCGUAUGGAAUCAAAGAGCUUAAGCGGUCAACAUAAAAAAUCCUCACUAUAUAAUGAAUAAGGCUGACAACCAAAAUUCAAGAUAUAGGAGGAUAAGUCAAUGGUAAGUAAAGCCAAUGACGAUUCAAGUCUAUCACACACCAAAUGGAACUGUAAGUACCACAUUGUUUUCACCCCGAAAUAGAGAAGAAAAGCCAUUUGCGGAAAGCUUAGAACGGAUAGAUAUUUUCUGCUGGCUUGUUUUCCGCCUUUGUUUUCCAACAGCCAAAUCAAGCCAUCCUAUGAUAAAAUAAGAGUUGUUUACCGAAUUGUGUAGUGUAAACAAUGGAAAGAUAGUUUUUUACCAACUAUUUUGUCUACUAUGUCUUGAGAAAAUGGUGAGUCUAAUGAGGCAGCAUCAUAUCGCAAAAUACAUUGAUUUUCGACCGCACUUUUUUGUAGCUUAUCGGCUUUUAUGUUCUUAGUUAAUAAAAAAGCUUGGAGAAUAUUCCAAGCUUUUAUCAAGAUUUAGACGAAAACUCA ...((((...((((((((.(((((...((((...(((((((((((((....))))))))))))).....................((((((.(..(((((.......((((((((..((((.((((....)))).)))).........((((((((...))))))))..)))))))).....((((((..........((((((.((((((..(((((..((.......))...)))))..))))))))))))(((((((((.........(((...(((.......)))..............(((.((.....)).)))(((((..((((((..(((((((((..............(((((((((..((..(((.((((.....))))))).)).))))))))))))))))))............(((((.(((..((.(((((((((...((((((((((..........).)))))))))(((((((....))))).))...)))))))))))..))).)))))......))))))..))))).))).((........))......)))))))))..))))))..)))))..).))))))..))))...)))))))))))))...((((((((((((....))))))))))))..............))))..... (-182.13) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 850 410 361 79 30 aact:AA01226|5end_IS200-like_transposase_ISAa1_838066..838296_POSITIVE 698 379 331 231 183 aact:AA01244|5end_transposase_847747..847977_POSITIVE 620 350 302 219 171 aact:AA02040|5end_hypothetical_protein_(possible_transposase_fragment)_1388136..1388366_POSITIVE 423 599 553 162 117 aact:AA00625|5end_hypothetical_protein_430565..430795_POSITIVE 423 599 553 54 9 aact:AA00623|5end_hypothetical_protein_430457..430687_POSITIVE 388 597 553 102 53 aact:AA01753|5end_conserved_hypothetical_protein_1185322..1185552_POSITIVE 375 588 544 62 19 aact:AA00602|5end_1-deoxy-D-xylulose_5-phosphate_reductoisomerase_409077..409307_POSITIVE 353 128 85 185 140 aact:AA00335|5end_PTS_fructose-specific_IIBC_component_226489..226719_POSITIVE 351 586 545 172 130 aact:AA02092|5end_glycogen_synthase_1424674..1424904_POSITIVE 350 130 87 99 57 aact:AA00803|5end_hypothetical_protein_549526..549756_POSITIVE 344 599 558 153 112 aact:AA01407|5end_outer_membrane_antigenic_lipoprotein_b_precursor_949005..949235_POSITIVE 343 591 553 172 131 aact:AA01603|5end_oligopeptidase_A_1082898..1083128_POSITIVE 340 594 558 58 23 aact:AA01877|5end_conserved_hypothetical_protein_1264115..1264345_POSITIVE 339 589 546 91 37 aact:AA02989|5end_conserved_hypothetical_protein_2089118..2089348_POSITIVE 339 570 526 70 13 aact:AA01658|5end_maltose_operon_periplasmic_protein_precursor_1124104..1124334_POSITIVE 338 594 553 155 116 aact:AA02885|5end_conserved_hypothetical_protein_2022428..2022658_POSITIVE 334 590 546 85 40 aact:AA02546|5end_hypothetical_protein_1774538..1774768_POSITIVE 332 589 541 91 35 aact:AA01865|5end_thiamin_ABC_transporter,_periplasmic-binding_protein_1252228..1252458_POSITIVE 330 596 551 127 72 aact:AA02662|5end_hypothetical_protein_1853283..1853513_POSITIVE 327 289 241 231 167 aact:AA00384|5end_conserved_hypothetical_protein_(possible_nitrogen_fixation_protein)_260108..260338_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 423 599 553 149 104 aact:AA00623|3end_hypothetical_protein_430632..430782_POSITIVE 400 130 85 51 3 aact:AA02697|3end_hydrogenase_3_maturation_protease_1880408..1880558_POSITIVE 388 597 553 92 43 aact:AA01751|3end_conserved_hypothetical_protein_1185392..1185542_POSITIVE 360 134 91 67 19 aact:AA00010|3end_transposase_orfB_fragment_6297..6447_POSITIVE 351 586 545 85 43 aact:AA02091|3end_hypothetical_protein_1424667..1424817_POSITIVE 343 599 552 78 21 aact:AA00218|3end_argininosuccinate_lyase_152211..152361_POSITIVE 339 589 546 87 33 aact:AA02987|3end_histidine_triad_protein_homolog_2089194..2089344_POSITIVE 338 594 553 74 35 aact:AA02883|3end_conserved_hypothetical_protein_2022427..2022577_POSITIVE 334 588 543 146 101 aact:AA02990|3end_beta_hexosaminadase_2090596..2090746_POSITIVE 330 596 551 111 56 aact:AA02659|3end_conserved_hypothetical_protein_1853347..1853497_POSITIVE 330 598 553 130 87 aact:AA02135|3end_hypothetical_protein_1459067..1459217_POSITIVE 330 598 553 146 103 aact:AA02135.1|3end_hypothetical_protein_1459083..1459233_POSITIVE 326 138 91 49 2 aact:AA00450|3end_outer_membrane_antigenic_lipoprotein_b_precursor_315156..315306_POSITIVE 325 289 248 46 4 aact:AA01641|3end_hypothetical_protein_1111036..1111186_POSITIVE 325 591 556 40 2 aact:AA01601|3end_PTS_system,_glucose-specific_IIA_componen_1082846..1082996_POSITIVE 324 594 558 68 24 aact:AA01804|3end_sugar_nucleotide_epimerase;_cell_division_inhibitor_1216001..1216151_POSITIVE 324 351 316 124 80 aact:AA01351|3end_probable_sulfatase_916393..916543_POSITIVE 321 599 556 84 40 aact:AA02892|3end_oligopeptide_ABC_transporter,_periplasmic-binding_protein_2027177..2027327_POSITIVE 320 567 521 117 74 aact:AA02757|3end_histidinol-phosphate_aminotransferase_2_1931808..1931958_POSITIVE 320 587 543 88 46 aact:AA02160|3end_conserved_hypothetical_protein_1478929..1479079_POSITIVE