Origin IGS: aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaaggagtcgtaatgaacaagttcatatctgtcataaattgggccttatcaacactctgtgttgcattaagttcatttttagttatctgtgtagtttggcaagtcttatctcgctatattcttaacacaccaagtacttacactgatgagatcgcgcgctttctctttatttgggtaggattaatgggggccgcctatgcattaggtcggaagaaacaccttgccattgatcttttagtcaacaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atttgttgactaaaagatcaatggcaaggtgtttcttccgacctaatgcataggcggcccccattaatcctacccaaataaagagaaagcgcgcgatctcatcagtgtaagtacttggtgtgttaagaatatagcgagataagacttgccaaactacacagataactaaaaatgaacttaatgcaacacagagtgttgataaggcccaatttatgacagatatgaacttgttcattacgactcctttttgccgttaaatttaaattggtaaaccaattatgctttaaaatttcttttctgcaagtttttttgtttaaaagtgtgatctggctcaccaattacaaataattggattgaccacttgatttttttgggtctattatcttcacaacctcctagttgttagagggttgttctttaatttacttactatgggagatgcgtt Mask Tandem Repeat Region ================================================ aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaaggagtcgtaatgaacaagttcatatctgtcataaattgggccttatcaacactctgtgttgcattaagttcatttttagttatctgtgtagtttggcaagtcttatctcgctatattcttaacacaccaagtacttacactgatgagatcgcgcgctttctctttatttgggtaggattaatgggggccgcctatgcattaggtcggaagaaacaccttgccattgatcttttagtcaacaaat Find is-nt database================================================ Query_seq: AA02385:AA02386|AA02385:AA02386:dicarboxylate-binding periplasmic protein:hypothetical protein:->->:1634241..1634685 445 aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaaggagtcgtaatgaacaagttcatatctgtcataaattgggccttatcaacactctgtgttgcattaagttcatttttagttatctgtgtagtttggcaagtcttatctcgctatattcttaacacaccaagtacttacactgatgagatcgcgcgctttctctttatttgggtaggattaatgggggccgcctatgcattaggtcggaagaaacaccttgccattgatcttttagtcaacaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA02385:AA02386|AA02385:AA02386:dicarboxylate-binding periplasmic protein:hypothetical protein:->->:1634241..1634685 445 aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaaggagtcgtaatgaacaagttcatatctgtcataaattgggccttatcaacactctgtgttgcattaagttcatttttagttatctgtgtagtttggcaagtcttatctcgctatattcttaacacaccaagtacttacactgatgagatcgcgcgctttctctttatttgggtaggattaatgggggccgcctatgcattaggtcggaagaaacaccttgccattgatcttttagtcaacaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA02385:AA02386|AA02385:AA02386:dicarboxylate-binding periplasmic protein:hypothetical protein:->->:1634241..1634685 445 aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaaggagtcgtaatgaacaagttcatatctgtcataaattgggccttatcaacactctgtgttgcattaagttcatttttagttatctgtgtagtttggcaagtcttatctcgctatattcttaacacaccaagtacttacactgatgagatcgcgcgctttctctttatttgggtaggattaatgggggccgcctatgcattaggtcggaagaaacaccttgccattgatcttttagtcaacaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 68 Min: 202 Max: 444 Len: 243 Subject: UniRef90_Q65V62 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 9.0E-24 bit: 111.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M T K F I S L L E R I L A V F C V V L C I A L V I S V V W Q V F S R Y V L N A P S T V T D E L A R F L F I W V G L V G A A Y G L G K K K H L A I D L L L M K . Subject: UniRef90_A0WII2 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Marinomonas sp. MWYL1|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Marinomonas sp. MWYL1 HSP 1 e-value: 3.0E-23 bit: 109.0 Len: 225 Query Start:211 Query End:435 Subject Strand: null Subject Start: 1 Subject End: 75 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... .................................................................................................................................................................................................................. M A K F I H V V D R V L S T V C I V L M V S L V V C V V W Q V F S R Y V L G A P S T S T D E L A R F L F I W V G L L G A A F T L G K K K H L A M D F L .......... Subject: UniRef90_Q3EGA4 Cluster: Uncharacterized BCR precursor; n=1; Actinobacillus succinogenes 130Z|Rep: Uncharacterized BCR precursor - Actinobacillus succinogenes 130Z HSP 1 e-value: 7.0E-23 bit: 108.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M T R L I S L L D R I L A A F C I V L C A A L V V S V V W Q V F S R Y V L N D P S T V T D E L A R F L F I W V G L V G A A Y G L G K K K H L A I D L L L M K . Subject: UniRef90_Q8D559 Cluster: TRAP-type C4-dicarboxylate transport system, small permease component; n=3; Vibrio|Rep: TRAP-type C4-dicarboxylate transport system, small permease component - Vibrio vulnificus HSP 1 e-value: 2.0E-22 bit: 106.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N K L V T Y I N R G L A A F T V S L S T F L V F C V V W Q V L S R Y V L G K P S T V T D E L A R Y L F M W V A L I G A A Y T T G L K R H L A I D L L T M K . Subject: UniRef90_Q2BY99 Cluster: Putative small integral C4-dicarboxylate membrane transport protein; n=1; Photobacterium sp. SKA34|Rep: Putative small integral C4-dicarboxylate membrane transport protein - Photobacterium sp. SKA34 HSP 1 e-value: 4.0E-22 bit: 105.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K K L V E Y I N R G L A A F T V S L S S F L V I C V V W Q V L S R Y V I G K P S T V T D E L A R Y L F M W V A L I G A A Y T T G L K R H L A I D L L T M K . Subject: UniRef90_Q6LG52 Cluster: Putative small integral C4-dicarboxylate membrane transport protein; n=2; Photobacterium profundum|Rep: Putative small integral C4-dicarboxylate membrane transport protein - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 5.0E-22 bit: 105.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N K L V G Y I N R G L A A F T V S L S T F L V F C V I W Q V I S R Y V I G K P S T I T D E L A R Y L F M W V A L V G A A Y T T G Q K R H L A I D L L T M K . Subject: UniRef90_A1SR90 Cluster: Tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ; n=1; Psychromonas ingrahamii 37|Rep: Tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ - Psychromonas ingrahamii (strain 37) HSP 1 e-value: 1.0E-20 bit: 100.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M G K V I T F I N R G L A A F T I F L S T F L V F C V I W Q V F S R Y V I G E P S T V T D E L A R Y L F M W V A L I G A A Y T S G A K R H L A I D L L T R K . Subject: UniRef90_Q1ZCE4 Cluster: Uronate isomerase; n=1; Psychromonas sp. CNPT3|Rep: Uronate isomerase - Psychromonas sp. CNPT3 HSP 1 e-value: 1.0E-19 bit: 97.4 Len: 216 Query Start:229 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 72 .................................................................................................................................................................................................................................... V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................................... V V D K L L V Y F T V S L S V L L V F C V I W Q V I S R Y V I G I P S T F T D E M A R F L F M W V G L I G A A Y T T G Q K K H L A I D L L T L K . Subject: UniRef90_Q83Q88 Cluster: Hypothetical protein; n=2; Shigella flexneri|Rep: Hypothetical protein - Shigella flexneri HSP 1 e-value: 7.0E-19 bit: 95.1 Len: 228 Query Start:205 Query End:432 Subject Strand: null Subject Start: 1 Subject End: 76 ............................................................................................................................................................................................................ V V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L ............. ............................................................................................................................................................................................................ M I F N R L K L A V D R V I A T F S V A V M L A L V V C V V W Q V F S R Y V L N Q P S T L T D E L A R F L M I W V G L L G A A Y T V G A Q R H L S I D L ............. Subject: UniRef90_Q7N9X8 Cluster: Similar to dicarboxylate transport system; n=1; Photorhabdus luminescens subsp. laumondii|Rep: Similar to dicarboxylate transport system - Photorhabdus luminescens subsp. laumondii HSP 1 e-value: 9.0E-19 bit: 94.7 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K N L V Y C L N K G L A F F T V S L S V F L V F C V T W Q V V S R Y V F G T P S T V T D E L A R Y L F M W V A M I G A A Y T T G Q H R H L A I D L L T M K . Subject: UniRef90_A0P413 Cluster: Hypothetical protein; n=1; Stappia aggregata IAM 12614|Rep: Hypothetical protein - Stappia aggregata IAM 12614 HSP 1 e-value: 3.0E-17 bit: 89.7 Len: 204 Query Start:232 Query End:435 Subject Strand: null Subject Start: 29 Subject End: 96 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... ....................................................................................................................................................................................................................................... V D M I L R L V I I T A F T V L V A C V V W Q V V S R Y V L Q S P S T V T D E M A R F L F I W V A L L G A A Y T F G Q R R H L A I D L L .......... Subject: UniRef90_Q65UQ6 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 8.0E-17 bit: 88.2 Len: 231 Query Start:211 Query End:441 Subject Strand: null Subject Start: 23 Subject End: 99 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N .... .................................................................................................................................................................................................................. L E K L K K P V D V F I S T F S I I V M V L L V I C V T W Q V F S R Y V L Q I P S T I T D E I A R F S M I W V G L L G A A Y T V G L Q K H L S I D L F T H .... Subject: UniRef90_Q1GMW7 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Silicibacter sp. TM1040|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Silicibacter sp. (strain TM1040) HSP 1 e-value: 2.0E-16 bit: 87.0 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 5 Subject End: 75 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... V D M L L K L V I T T I F V V L V A C V S W Q V I S R Y V L G T P S T V T D E L A R F L F M W L A L V G G A Y T L G L R R H L A I D L L T Q K . Subject: UniRef90_Q26DK3 Cluster: TRAP-type C4-dicarboxylate transport system, small permease component; n=1; Flavobacteria bacterium BBFL7|Rep: TRAP-type C4-dicarboxylate transport system, small permease component - Flavobacteria bacterium BBFL7 HSP 1 e-value: 6.0E-15 bit: 82.0 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 5 Subject End: 75 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... I D S I L G K L C L L L L T I M L F A V V W Q V I A R F I L Q S P S T I T D E I S S Y S L I W V G L L G A A Y A T G Q H L H L A I D L I P E K . Subject: UniRef90_A3HWQ3 Cluster: Hypothetical protein; n=1; Algoriphagus sp. PR1|Rep: Hypothetical protein - Algoriphagus sp. PR1 HSP 1 e-value: 1.0E-14 bit: 80.9 Len: 201 Query Start:244 Query End:444 Subject Strand: null Subject Start: 14 Subject End: 80 ................................................................................................................................................................................................................................................... L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ................................................................................................................................................................................................................................................... I S H L L I F L M A L M V L N V T W Q V V S R Y V F Q D P S S F T D E L S R Y M L I W V G M L G A A Y V A G K N D H L A I D I L L T K . Subject: UniRef90_Q21M84 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Saccharophagus degradans 2-40|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) HSP 1 e-value: 1.0E-14 bit: 80.9 Len: 225 Query Start:211 Query End:435 Subject Strand: null Subject Start: 1 Subject End: 75 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... .................................................................................................................................................................................................................. M R D V M N V I E K W L A W I C A T L M A L M V V D V T W Q V V S R F I L S N P S S F S E E L A R F L L I W I G F L G A A Y A Y R R H A H L G L D I L .......... Subject: UniRef90_Q21LA0 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Saccharophagus degradans 2-40|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) HSP 1 e-value: 1.0E-14 bit: 80.9 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 81 .................................................................................................................................................................................................................. M N K F I S V I N W - - - A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N S F I K I I N L I D N G I R N I L N F L L V F L V V D V C W Q V L T R F V L P E P S S Y T E E I A R F L L I W I G L L G A A H A Y R Q S M H L G I D Y F V A K . Subject: UniRef90_Q9KEZ7 Cluster: C4-dicarboxylate transport system; n=1; Bacillus halodurans|Rep: C4-dicarboxylate transport system - Bacillus halodurans HSP 1 e-value: 3.0E-14 bit: 79.7 Len: 237 Query Start:208 Query End:444 Subject Strand: null Subject Start: 4 Subject End: 82 ............................................................................................................................................................................................................... V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................... V L K K I K T V M N R V I M I V A S I L T I V L V L G A L W Q V F S R Y V L N D P S T F T E E L L R F L L I W V A M L G T T Y A F G S N E H L A I I Y L K N K . Subject: UniRef90_Q1R6X6 Cluster: Hypothetical protein; n=5; Escherichia coli|Rep: Hypothetical protein - Escherichia coli (strain UTI89 / UPEC) HSP 1 e-value: 3.0E-14 bit: 79.7 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M R T L T H I L N K I L A G C C C I I L A I M V F C V T W Q V I A R F I F N A P S T V L D E F T Q I L F M W M I L L G G V Y T A G L K K H L A I D L L A Q K . Subject: UniRef90_A3XJI7 Cluster: Hypothetical protein; n=1; Leeuwenhoekiella blandensis MED217|Rep: Hypothetical protein - Leeuwenhoekiella blandensis MED217 HSP 1 e-value: 4.0E-14 bit: 79.3 Len: 201 Query Start:244 Query End:444 Subject Strand: null Subject Start: 9 Subject End: 75 ................................................................................................................................................................................................................................................... L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ................................................................................................................................................................................................................................................... L G A I L V F L M A S I V I A V L W Q V F S R Y V L Q S A S S F T E E I A R Y L L I W I G I L G A A Y A A G Q Q D H L A I N I L P P K . Subject: UniRef90_Q8EMM5 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Oceanobacillus iheyensis|Rep: C4-dicarboxylate transport system permease small protein - Oceanobacillus iheyensis HSP 1 e-value: 6.0E-14 bit: 78.6 Len: 201 Query Start:244 Query End:444 Subject Strand: null Subject Start: 12 Subject End: 78 ................................................................................................................................................................................................................................................... L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ................................................................................................................................................................................................................................................... L A I I C I G L F G F L V L L V T W Q V F T R F V L N N P S V F S E E L A K Y C F V W L V L F G A A Y V F G E R G H M A V E F I K N K . Subject: UniRef90_A4CGG5 Cluster: Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component; n=1; Robiginitalea biformata HTCC2501|Rep: Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component - Robiginitalea biformata HTCC2501 HSP 1 e-value: 6.0E-14 bit: 78.6 Len: 225 Query Start:211 Query End:435 Subject Strand: null Subject Start: 1 Subject End: 75 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... .................................................................................................................................................................................................................. M K T F R Q R L D R L L A S A L I L I M T A M V L N V L W Q V F S R Y V L G S P S S F T D E L A R Y L M I W L G V L G A A Y V A G K N G H V A I D I L .......... Subject: UniRef90_A2UGV0 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component precursor; n=3; Escherichia coli|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component precursor - Escherichia coli B HSP 1 e-value: 6.0E-14 bit: 78.6 Len: 225 Query Start:211 Query End:435 Subject Strand: null Subject Start: 1 Subject End: 75 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... .................................................................................................................................................................................................................. M R N I I R S I N A L L A A L N I T I L A I I V A C V T W Q V A A R F I F T S P S I F T D E L S R L L F I C L G L F G G A Y T A G Q N R H L A I D L L .......... Subject: UniRef90_Q6LH50 Cluster: Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component; n=1; Photobacterium profundum|Rep: Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 8.0E-14 bit: 78.2 Len: 216 Query Start:229 Query End:444 Subject Strand: null Subject Start: 9 Subject End: 80 .................................................................................................................................................................................................................................... V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................................... M V N R V L V S I L I L F M G L M V L T V I W Q V F T R F I I N D P S V F T D E L S R Y L L I W I G I L G G A Y T F S V K R H L A L E L L A S R . Subject: UniRef90_Q65IV7 Cluster: Hypothetical protein; n=1; Bacillus licheniformis ATCC 14580|Rep: Hypothetical protein - Bacillus licheniformis (strain DSM 13 / ATCC 14580) HSP 1 e-value: 2.0E-13 bit: 77.0 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 8 Subject End: 78 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... V N K T I E C L T C T L M A I M V L V A I W Q V F T R Y V L N S P S T F S E E F L R Y S L I W I S M L G G A Y A F W K K K H L A I E F I V R K . Subject: UniRef90_Q5WLB3 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Bacillus clausii KSM-K16|Rep: C4-dicarboxylate transport system permease small protein - Bacillus clausii (strain KSM-K16) HSP 1 e-value: 2.0E-13 bit: 77.0 Len: 222 Query Start:223 Query End:444 Subject Strand: null Subject Start: 2 Subject End: 79 .............................................................................................................................................................................................................................. I S V I N W A L S T L C V A L S S - - - - F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .............................................................................................................................................................................................................................. I E K I N G G L G K I I M F L S S V M F G L M V L V A I W Q V I S R Y V L N A P S T F S E E F L R Y S L I W V T M I G G A Y A F H L K K H I A I E M L V N R . Subject: UniRef90_Q40WD0 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Kineococcus radiotolerans SRS30216|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Kineococcus radiotolerans SRS30216 HSP 1 e-value: 2.0E-13 bit: 76.6 Len: 219 Query Start:226 Query End:444 Subject Strand: null Subject Start: 30 Subject End: 102 ................................................................................................................................................................................................................................. S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ................................................................................................................................................................................................................................. N A L D R V L S W V C V V L F A A L V L D V V W Q V F T R Q V L D A P S A W S E E L A K Y L F I W L G L L G S A L V F G E R G H V G V E L L V Q K . Subject: UniRef90_A3UU91 Cluster: C4-dicarboxylate transport system; n=1; Vibrio splendidus 12B01|Rep: C4-dicarboxylate transport system - Vibrio splendidus 12B01 HSP 1 e-value: 3.0E-13 bit: 76.3 Len: 192 Query Start:244 Query End:435 Subject Strand: null Subject Start: 9 Subject End: 76 ................................................................................................................................................................................................................................................... L S T L C V A L S S F - - - - L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... ................................................................................................................................................................................................................................................... L D R L I L F V S S F A L M L L V V T V T W Q V F S R Y V L N D P S N W T D E L A R Y A M V W L G L L G A S Y L F G I K G H L A I T L L .......... Subject: UniRef90_Q5WKF7 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Bacillus clausii KSM-K16|Rep: C4-dicarboxylate transport system permease small protein - Bacillus clausii (strain KSM-K16) HSP 1 e-value: 4.0E-13 bit: 75.9 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 12 Subject End: 82 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... L N R L I M T V A S M L T V V L V C C A L W Q I L S R Y V L G S P S I I T E E L S R F L L I W A A M L G A A Y A F G S K E Q L A I V F L K S K . Subject: UniRef90_Q9RN75 Cluster: Putative small integral C4-dicarboxylate membrane transport protein DctQ; n=1; Klebsiella pneumoniae|Rep: Putative small integral C4-dicarboxylate membrane transport protein DctQ - Klebsiella pneumoniae HSP 1 e-value: 5.0E-13 bit: 75.5 Len: 138 Query Start:298 Query End:435 Subject Strand: null Subject Start: 1 Subject End: 46 ......................................................................................................................................................................................................................................................................................................... Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... ......................................................................................................................................................................................................................................................................................................... Q V F S R Y V L N Q P S T L T D E L A R F L M I W V G L L G A A Y T V G A Q R H L A I D L L .......... Subject: UniRef90_A4AC71 Cluster: Tripartite ATP-independent periplasmic transporters, DctQ component; n=1; Congregibacter litoralis KT71|Rep: Tripartite ATP-independent periplasmic transporters, DctQ component - Congregibacter litoralis KT71 HSP 1 e-value: 9.0E-13 bit: 74.7 Len: 228 Query Start:217 Query End:444 Subject Strand: null Subject Start: 9 Subject End: 84 ........................................................................................................................................................................................................................ K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ........................................................................................................................................................................................................................ K L L L A L E S G L R W L L I M L M A A L V M A V S W Q V L S R Y V L T Q P S S W T E E A S R F L L V W L S V L G A T Y A Y R G R M H L A I D L L P R K . Subject: UniRef90_Q5PKH7 Cluster: Possible membrane transport protein; n=4; Salmonella|Rep: Possible membrane transport protein - Salmonella paratyphi-a HSP 1 e-value: 1.0E-12 bit: 74.3 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N T F R K G L D L L L G A I C C L V L A I M V G I A C W Q V V S R Y I L G V P S T L T E E M L R F L L V W V S M L G M A F V A G Q K Q H I S L T I L L D K . Subject: UniRef90_Q8ZM01 Cluster: Putative inner membrane protein; n=2; Salmonella|Rep: Putative inner membrane protein - Salmonella typhimurium HSP 1 e-value: 2.0E-12 bit: 73.9 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M R I L T N A L N K I L A G C C C I I L A V M V A C V S W Q V A A R F I F N A P S S T L D E F T Q I L F M W M I L L G G V Y T A G L K K H L A I D L L A Q K . Subject: UniRef90_A4ASH6 Cluster: TRAP-type C4-dicarboxylate transport system, small permease component; n=1; Flavobacteriales bacterium HTCC2170|Rep: TRAP-type C4-dicarboxylate transport system, small permease component - Flavobacteriales bacterium HTCC2170 HSP 1 e-value: 3.0E-12 bit: 73.2 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 79 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K - H L A I D L L V N K . .................................................................................................................................................................................................................. M K K A Y T F L N K V I E N L L V I I F G L L V I D V V W Q V L S R Y V V G Q S S S F T E E F A R F S L I W L T V L G A A Y I N G Q K E G H L S M D F L L S K . Subject: UniRef90_Q2BDB9 Cluster: Hypothetical protein; n=1; Bacillus sp. NRRL B-14911|Rep: Hypothetical protein - Bacillus sp. NRRL B-14911 HSP 1 e-value: 1.0E-11 bit: 70.9 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 8 Subject End: 78 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... I D L S I A F V T C T L L G V M V L M A I W Q V F T R Y A L D S P S T I S E E F L R Y S L I W V S M L G G A Y A F G N K K H I A I E F I V E K . Subject: UniRef90_Q0F5I3 Cluster: TRAP dicarboxylate transporter, DctQ subunit; n=1; alpha proteobacterium HTCC2255|Rep: TRAP dicarboxylate transporter, DctQ subunit - alpha proteobacterium HTCC2255 HSP 1 e-value: 4.0E-11 bit: 69.3 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N K F H N F I L S G L K N V I I L Q M I A I V L I V S L Q V F T R F V L Q S S S S F T E E L A R F L L I W I G L F G A A Y G Y Q M N A H L G L D I I T N K . Subject: UniRef90_Q8EL27 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Oceanobacillus iheyensis|Rep: C4-dicarboxylate transport system permease small protein - Oceanobacillus iheyensis HSP 1 e-value: 2.0E-10 bit: 66.6 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K K V K R W F D L G L L T I A S I L I L F L V V A A I W Q V F T R F V L Q D P S I S T Q E V L R F S L I W V A V I G A T Y A F G Q D E H L S L T F L R D K . Subject: UniRef90_Q1ZJ71 Cluster: Hypothetical C4-dicarboxylate transport system, small permease component; n=1; Psychromonas sp. CNPT3|Rep: Hypothetical C4-dicarboxylate transport system, small permease component - Psychromonas sp. CNPT3 HSP 1 e-value: 2.0E-10 bit: 66.6 Len: 237 Query Start:208 Query End:444 Subject Strand: null Subject Start: 17 Subject End: 95 ............................................................................................................................................................................................................... V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................... I I N K S K Y F I D Q I V S T I C I F I V G I M T I L V T Y Q V V V R Y L F D S P S A I S E V L S R Y L F I W L I L F S S A Y V F G Q R E H M A I T F F R N K . Subject: UniRef90_Q6LGJ1 Cluster: Hypothetical C4-dicarboxylate transport system, small permease component; n=1; Photobacterium profundum|Rep: Hypothetical C4-dicarboxylate transport system, small permease component - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 3.0E-10 bit: 66.2 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 5 Subject End: 75 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... V D K V V S S I C I A I V G S M T V L V T Y Q V V A R Y A F N S P S A V S E V L S R Y L F I W L I L F G S A Y V F G L R E H M A I T Y V R N K . Subject: UniRef90_Q8FNA5 Cluster: Putative C4-dicarboxylate permease small protein; n=1; Corynebacterium efficiens|Rep: Putative C4-dicarboxylate permease small protein - Corynebacterium efficiens HSP 1 e-value: 6.0E-10 bit: 65.5 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M T A L K A T I T R I L G A V S V I L F A V L V C V T V W Q V F T R Q V V H S P S T W S E E L S K I L F V W L A F A G S A F L F G E R G H I A V D F L A R K . Subject: UniRef90_Q838L6 Cluster: TRAP dicarboxylate transporter, DctQ subunit; n=1; Enterococcus faecalis|Rep: TRAP dicarboxylate transporter, DctQ subunit - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 3.0E-9 bit: 63.2 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K G F R K F L N R L L E I L G S I I L A A M V L V V L Y Q V F A R T V L K N P S T L T E E F V R F A L V W M A M L A S A Y V V G K K G H L A V T L L S E K . Subject: UniRef90_Q3XZJ5 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component precursor; n=1; Enterococcus faecium DO|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component precursor - Enterococcus faecium DO HSP 1 e-value: 3.0E-9 bit: 63.2 Len: 216 Query Start:229 Query End:444 Subject Strand: null Subject Start: 4 Subject End: 75 .................................................................................................................................................................................................................................... V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................................... I L N K V L E I L G A V L L V G M V A V V L W Q V F S R T V L G N P N T V T E E L V R F G L V W F A M L S S A Y V V G Q K A H L A V T V L S E K . Subject: UniRef90_P44994 Cluster: Putative TRAP transporter small permease protein HI1030; n=1; Haemophilus influenzae|Rep: Putative TRAP transporter small permease protein HI1030 - Haemophilus influenzae HSP 1 e-value: 3.0E-9 bit: 63.2 Len: 237 Query Start:208 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................................................................................................................... V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................... M M R S L A H F I N K A L E I L C I S I L A L M S I L V F L N V V L R Y G F N S G I S I T E E I S R Y L F I W L A F L G A V L A F N E N Q H V S V T V L V N K . Subject: UniRef90_Q0FH54 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Roseovarius sp. HTCC2601|Rep: C4-dicarboxylate transport system permease small protein - Roseovarius sp. HTCC2601 HSP 1 e-value: 1.0E-8 bit: 61.2 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 71 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... M N W L V E R V C V A L L V L L V L D V W L G V L V R Y V I P L P L T F T E E L A R Y L M I W M A L L A V S S G I A H R E H I G V E F I F S R . Subject: UniRef90_Q5WAK1 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Bacillus clausii KSM-K16|Rep: C4-dicarboxylate transport system permease small protein - Bacillus clausii (strain KSM-K16) HSP 1 e-value: 2.0E-8 bit: 60.1 Len: 231 Query Start:211 Query End:441 Subject Strand: null Subject Start: 1 Subject End: 80 .................................................................................................................................................................................................................. M N K F I S V I - - - N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N .... .................................................................................................................................................................................................................. M N T Y I R I I D G I N N G V K S I V S V M L A I L A V L V V L Q V M T R F V I N V P L A W T E E I A R Y L M I Y I V F L G S G L A M R H N Q H I A I D F L L D .... Subject: UniRef90_Q5KYH8 Cluster: Transporter; n=1; Geobacillus kaustophilus|Rep: Transporter - Geobacillus kaustophilus HSP 1 e-value: 3.0E-7 bit: 56.6 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 9 Subject End: 79 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... L D G A L N V L M A S T L A F M C I L V F G N V V L R Y G F N S G I T W S E E M S R F L F I W M S F L G A I G A L K D N D H L G V D T L V R K . Subject: UniRef90_A4FJU5 Cluster: C4-dicarboxylate transport system; n=1; Saccharopolyspora erythraea NRRL 2338|Rep: C4-dicarboxylate transport system - Saccharopolyspora erythraea NRRL 2338 HSP 1 e-value: 3.0E-7 bit: 56.6 Len: 225 Query Start:211 Query End:435 Subject Strand: null Subject Start: 7 Subject End: 81 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... .................................................................................................................................................................................................................. L N R V R R A L G G V L A G F A G A L L V V M T L L V L Y Q V F T R Y V L G S P A A F T E E L V R Y A L I W T S M I S A A Y A F L H R K H M S L V V L .......... Subject: UniRef90_A4IPP6 Cluster: Putative ABC transporter integral membrane protein; n=1; Geobacillus thermodenitrificans NG80-2|Rep: Putative ABC transporter integral membrane protein - Geobacillus thermodenitrificans NG80-2 HSP 1 e-value: 3.0E-7 bit: 56.2 Len: 243 Query Start:202 Query End:444 Subject Strand: null Subject Start: 5 Subject End: 78 ......................................................................................................................................................................................................... G V V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ......................................................................................................................................................................................................... G A V L E K T L N - - - - A L M A L C L A L M S I L V F - - - G N V V L R Y G F N S G I T W S E E M S R F L F I W M S F F G A I G A L K D N D H L G V D T L L R K . Subject: UniRef90_A4IPH7 Cluster: Putative ABC transporter integral membrane protein; n=1; Geobacillus thermodenitrificans NG80-2|Rep: Putative ABC transporter integral membrane protein - Geobacillus thermodenitrificans NG80-2 HSP 1 e-value: 4.0E-7 bit: 55.8 Len: 237 Query Start:208 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................................................................................................................... V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................... M L R R I G K I L D T T L N V L M A V A L A F M C I L V F G N V V L R Y G F N S G I T W S E E M S R F L F I W L S F F G A I G A L K D N N H L G V D I L L K K . Subject: UniRef90_Q8D615 Cluster: TRAP-type C4-dicarboxylate transport system, small permease component; n=2; Vibrio vulnificus|Rep: TRAP-type C4-dicarboxylate transport system, small permease component - Vibrio vulnificus HSP 1 e-value: 1.0E-6 bit: 54.3 Len: 192 Query Start:253 Query End:444 Subject Strand: null Subject Start: 13 Subject End: 76 ............................................................................................................................................................................................................................................................ L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................................................................ I T V P L M A A L L V V L T W Q I A T R W L L N D P S L W S E E L A R V L F M Y M S L I G C A I A I K R G T H V N I T F F S D K . Subject: UniRef90_A0TFZ7 Cluster: TRAP dicarboxylate transporter, DctM subunit; n=1; Burkholderia ambifaria MC40-6|Rep: TRAP dicarboxylate transporter, DctM subunit - Burkholderia ambifaria MC40-6 HSP 1 e-value: 1.0E-6 bit: 54.3 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 28 Subject End: 109 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q - - - - V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M P R W L S R V D F A L G V I V S V P A A L L V L A E V I L L F S G V V A R Y V L H H P L I W S D E L A A I L F L W L A M T G A A T A L H R G S H M R M T A L V N R . Subject: UniRef90_Q9KR65 Cluster: Hypothetical protein; n=7; Vibrio cholerae|Rep: Hypothetical protein - Vibrio cholerae HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 216 Query Start:229 Query End:444 Subject Strand: null Subject Start: 9 Subject End: 80 .................................................................................................................................................................................................................................... V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................................... I I N N I E E I I T V P L M A A L L A V L T W Q I G T R W L L N D P S L W S E E L A R L L F M Y M C L V G C A I A I K R S S H V N I T F F S D K . Subject: UniRef90_Q65WK1 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K A L A Q F V G K A I E T I C V I I L A T M S V L V F L N V V L R Y G F N S S I N I T E E V S R Y M F V W L A F L G A I L A F N E N Q H V S V T V F V E K . Subject: UniRef90_Q8ELH1 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Oceanobacillus iheyensis|Rep: C4-dicarboxylate transport system permease small protein - Oceanobacillus iheyensis HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 228 Query Start:211 Query End:438 Subject Strand: null Subject Start: 5 Subject End: 79 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V ....... .................................................................................................................................................................................................................. I N I M D S I N N W V K Y L V S F F L V G - L A V L V V L Q V T T R F V I N V P L S W T E E L A K Y L M I Y I V F L G S G L A M R H N Q H I A I D F L L ....... Subject: UniRef90_A3JCS7 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Marinobacter sp. ELB17|Rep: C4-dicarboxylate transport system permease small protein - Marinobacter sp. ELB17 HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 234 Query Start:205 Query End:438 Subject Strand: null Subject Start: 6 Subject End: 83 ............................................................................................................................................................................................................ V V M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V ....... ............................................................................................................................................................................................................ L L A H R A V D E F N R F I G L I L A G L L L V M T L L I F W Q V F A R F V I G S P L F F S D E I A R F S M L W L T F L G A G Y A Y R K G T L I S V D I L L ....... Subject: UniRef90_Q3EEF7 Cluster: Uncharacterized BCR precursor; n=1; Actinobacillus succinogenes 130Z|Rep: Uncharacterized BCR precursor - Actinobacillus succinogenes 130Z HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M N A L A H F V K K A I E V I C V I I L S A M S I L V F V N V V L R Y G F N S S I N I T E E V S R Y M F V W L A F L G A V L A F N D N Q H V R V T V F V E K . Subject: UniRef90_Q5WCM1 Cluster: C4-dicarboxylate transport system permease small protein; n=1; Bacillus clausii KSM-K16|Rep: C4-dicarboxylate transport system permease small protein - Bacillus clausii (strain KSM-K16) HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M K A F L N S L E W V L M R A A A V F F V G F V V C I F L Q L L S R Y V P G I T I L W A A E I A T Y A F I W T V F L G A A V M V R H Q E H F K I D Y L Y E K . Subject: UniRef90_A0WDL3 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Marinomonas sp. MWYL1|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Marinomonas sp. MWYL1 HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 210 Query Start:223 Query End:432 Subject Strand: null Subject Start: 25 Subject End: 94 .............................................................................................................................................................................................................................. I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L ............. .............................................................................................................................................................................................................................. L R I V D W V F S V L A V S A L L A I T V V V V L Q V V S R F L L P S S P I W T E E L S R Y L F V Y L I V M G S G L V I R H N R H V R L E L ............. Subject: UniRef90_A3SIP3 Cluster: TRAP dicarboxylate transporter, DctM subunit; n=1; Roseovarius nubinhibens ISM|Rep: TRAP dicarboxylate transporter, DctM subunit - Roseovarius nubinhibens ISM HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 180 Query Start:232 Query End:411 Subject Strand: null Subject Start: 12 Subject End: 75 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F - - - - L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K .................................. ....................................................................................................................................................................................................................................... I S G A I D V V A S I I T S F A I I V L V A A V L L Q V V A R Y I F Q Q P P P Y T E E L A R Y A M I W A G L I G A S M A F K R R .................................. Subject: UniRef90_A3Y466 Cluster: TRAP-type C4-dicarboxylate transport system, small permease component; n=1; Vibrio sp. MED222|Rep: TRAP-type C4-dicarboxylate transport system, small permease component - Vibrio sp. MED222 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 192 Query Start:253 Query End:444 Subject Strand: null Subject Start: 13 Subject End: 76 ............................................................................................................................................................................................................................................................ L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................................................................ I T V P L M A I L L L V L T W Q I G T R W L L N D P S L W S E E L A R V L F M Y M S L I G C A M A I K T G S H V K I T F F S D K . Subject: UniRef90_A1HSQ0 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component precursor; n=1; Thermosinus carboxydivorans Nor1|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component precursor - Thermosinus carboxydivorans Nor1 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 234 Query Start:211 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 78 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . .................................................................................................................................................................................................................. M E S L S K A F N R L L H G L I A A C L S L M A V F V F A N V I L R Y F F N S G L T W A E E A S R Y L F I W L I F L G A I I A Y K E N A H L G V D T L V Q K . Subject: UniRef90_Q0FXI9 Cluster: Putative C4-dicarboxylate small membrane transport protein; n=1; Fulvimarina pelagi HTCC2506|Rep: Putative C4-dicarboxylate small membrane transport protein - Fulvimarina pelagi HTCC2506 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 204 Query Start:232 Query End:435 Subject Strand: null Subject Start: 28 Subject End: 98 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V - - - - W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... ....................................................................................................................................................................................................................................... L D W - I A A G C M A I A S V M M V I L I A I F G W L V F G R Y V L N N T P T W V E Q A A L L L I V W I T F L G A A A G V W R S T H L S I D F V .......... Subject: UniRef90_A1HSQ3 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component precursor; n=1; Thermosinus carboxydivorans Nor1|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component precursor - Thermosinus carboxydivorans Nor1 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 225 Query Start:217 Query End:441 Subject Strand: null Subject Start: 2 Subject End: 76 ........................................................................................................................................................................................................................ K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N .... ........................................................................................................................................................................................................................ K L L E Y A E R A L E W V V E L L L A L M A I V V F I N V I A R Y L F A K A F P W T E E I A I F M F T W I I F L G A L L A F K R H R H L G V D L L L N .... Subject: UniRef90_Q8NN70 Cluster: Uncharacterized BCR; n=3; Corynebacterium glutamicum|Rep: Uncharacterized BCR - Corynebacterium glutamicum (Brevibacterium flavum) HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 144 Query Start:301 Query End:444 Subject Strand: null Subject Start: 1 Subject End: 48 ............................................................................................................................................................................................................................................................................................................ V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ............................................................................................................................................................................................................................................................................................................ M F S R Q V L H S P S T W S E E L S K L L F V W L S F A G S A F L F G E R G H I A V D F I A R K . Subject: UniRef90_A1WSA0 Cluster: TRAP C4-dicarboxylate transport system permease DctM subunit; n=1; Verminephrobacter eiseniae EF01-2|Rep: TRAP C4-dicarboxylate transport system permease DctM subunit - Verminephrobacter eiseniae (strain EF01-2) HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 213 Query Start:232 Query End:444 Subject Strand: null Subject Start: 22 Subject End: 88 ....................................................................................................................................................................................................................................... I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ....................................................................................................................................................................................................................................... L E W A S A G L M L V I M A L L L T A V - - - - L S R Y L F S S P I V W I D E I V S M S F I W L C M M G T A L A M H R N E H L R L G L F V D Q . Subject: UniRef90_A1B7G4 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component precursor; n=1; Paracoccus denitrificans PD1222|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component precursor - Paracoccus denitrificans (strain Pd 1222) HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 192 Query Start:244 Query End:435 Subject Strand: null Subject Start: 25 Subject End: 88 ................................................................................................................................................................................................................................................... L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L .......... ................................................................................................................................................................................................................................................... I E A V L V L I F T G L I V L V F S N V V M R Y L L D T G L V V T D E V S R M M F V W I C F L G A I V V A R R N E H L D V D L L .......... Subject: UniRef90_A1TK62 Cluster: Tripartite ATP-independent periplasmic transporter, DctQ component; n=1; Acidovorax avenae subsp. citrulli AAC00-1|Rep: Tripartite ATP-independent periplasmic transporter, DctQ component - Acidovorax avenae subsp. citrulli (strain AAC00-1) HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 201 Query Start:244 Query End:444 Subject Strand: null Subject Start: 12 Subject End: 78 ................................................................................................................................................................................................................................................... L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N K . ................................................................................................................................................................................................................................................... L D F L M A G A L A V M V V M V F G N V V L R Y A F N T G I T V S E E V S R W L F V W L T F L G A I V A M R H H G H L G V D M L V S R . Subject: UniRef90_P44543 Cluster: Sialic acid TRAP transporter permease protein siaT; n=6; Haemophilus influenzae|Rep: Sialic acid TRAP transporter permease protein siaT - Haemophilus influenzae HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 225 Query Start:217 Query End:441 Subject Strand: null Subject Start: 2 Subject End: 73 ........................................................................................................................................................................................................................ K F I S V I N - W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A A Y A L G R K K H L A I D L L V N .... ........................................................................................................................................................................................................................ K Y I N K L E E W L G G A L F I A I F G I L I A - - - - Q I L S R Q V F H S P L I W S E E L A K L L F V Y V G M L G I S V A V R K Q E H V F I D F L T N .... aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 108 End: 320 ........................................................................................................... M V S Q I T L L N K K T C R K E I L K H N W F T N L N L T A K R S R N E Q V H I C H K L G L I N T L C C I K F I F S Y L ............................................................................................................................. Protein_Len: 60 Strand: + Start: 211 End: 444 .................................................................................................................................................................................................................. M N K F I S V I N W A L S T L C V A L S S F L V I C V V W Q V L S R Y I L N T P S T Y T D E I A R F L F I W V G L M G A . Protein_Len: 31 Strand: - Start: 192 End: 284 ............................................................................................................................................................................................... R C F P T T I F L N M D T M F Q A K D V S Q T A N L E N K T M ................................................................................................................................................................. aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: AA02385:AA02386|AA02385:AA02386:dicarboxylate-binding periplasmic protein:hypothetical protein:->->:1634241..1634685 445 aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt Intra-Species Hit: Count: 1 Min: 1 Max: 201 Len: 201 Subject: aact_AA02385_AA02386|dicarboxylate-binding periplasmic protein:hypothetical protein|POSITIVE:POSITIVE|[1634241,1634685]|445 HSP 1 e-value: 7.0E-85 bit: 315.0 Len: 201 Query Start:1 Query End:201 Subject Strand: POSITIVE Subject Start: 1 Subject End: 201 aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccnnnnnnntcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacnnnnnnncttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaa.................................................................................................................................................................................................................................................... aacgcatctcccatagtaagtaaattaaagaacaaccctctaacaactaggaggttgtgaagataatagacccaaaaaaatcaagtggtcaatccaattatttgtaattggtgagccagatcacacttttaaacaaaaaaacttgcagaaaagaaattttaaagcataattggtttaccaatttaaatttaacggcaaaaa.................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACGCAUCUCCCAUAGUAAGUAAAUUAAAGAACAACCCUCUAACAACUAGGAGGUUGUGAAGAUAAUAGACCCAAAAAAAUCAAGUGGUCAAUCCAAUUAUUUGUAAUUGGUGAGCCAGAUCACACUUUUAAACAAAAAAACUUGCAGAAAAGAAAUUUUAAAGCAUAAUUGGUUUACCAAUUUAAAUUUAACGGCAAAAA ...((...........(((((((........((((((..(((.....)))..))))))..........(((((...........).)))).......))))))).((((((((((((((.......((((......))))...(((..((((....))))...)))...))))))))))))))...........))..... (-39.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUUGCCGUUAAAUUUAAAUUGGUAAACCAAUUAUGCUUUAAAAUUUCUUUUCUGCAAGUUUUUUUGUUUAAAAGUGUGAUCUGGCUCACCAAUUACAAAUAAUUGGAUUGACCACUUGAUUUUUUUGGGUCUAUUAUCUUCACAACCUCCUAGUUGUUAGAGGGUUGUUCUUUAAUUUACUUACUAUGGGAGAUGCGUU ......(((..(((.((((..((((...((((((((............(((((..(((((....)))))..))))).(((((.(((....))))))))..))))))))....)))).)))).)))..)))......(((((((((((((..((((...))))..))))))....................))))))).... (-41.75) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 290 122 82 61 21 aact:AA00037|5end_conserved_hypothetical_protein_29170..29400_POSITIVE 261 149 108 86 50 aact:AA00894|5end_selenium_transferase_(Cysteinyl-tRNA(Sec)_selenium_transferase)_619879..620109_POSITIVE 257 77 37 138 88 aact:AA02968|5end_hypothetical_protein_2075917..2076147_POSITIVE 255 130 81 62 10 aact:AA01703|5end_L-ribulose-phosphate_4-epimerase_1155389..1155619_POSITIVE 252 125 85 39 8 aact:AA02629|5end_hypothetical_protein_1830072..1830302_POSITIVE 246 90 50 227 190 aact:AA02078|5end_hypothetical_protein_1412612..1412842_POSITIVE 243 118 79 52 19 aact:AA00447|5end_conserved_hypothetical_protein_311482..311712_POSITIVE 238 117 72 105 66 aact:AA00163|5end_type_IV_prepilin_peptidase;_type_II_secretion_pathway_related_protein_116006..116236_POSITIVE 233 150 103 63 22 aact:AA02466|5end_N-acetylneuraminate_lyase_1704963..1705193_POSITIVE 232 119 80 202 158 aact:AA02720|5end_ABC-related_spermidine/putrescine_transport_system_permease_1903256..1903486_POSITIVE 230 122 83 103 64 aact:AA02481|5end_conserved_hypothetical_protein_1719085..1719315_POSITIVE 227 121 84 188 148 aact:AA00699|5end_iron(III)_ABC_transporter,_permease_protein_478262..478492_POSITIVE 223 130 84 211 166 aact:AA01367|5end_tRNA_(Guanine-N(1)-)-methyltransferase_(M1G-methyltransferase)_923710..923940_POSITIVE 223 120 80 161 123 aact:AA01137|5end_anaerobic_dimethyl_sulfoxide_reductase,_chain_A_778560..778790_POSITIVE 220 68 29 132 85 aact:AA02253|5end_hypothetical_protein_1534605..1534835_POSITIVE 219 122 85 209 160 aact:AA00914|5end_aminoacyl-histidine_dipeptidase;_Beta-alanyl-histidine_dipeptidase_628038..628268_POSITIVE 218 79 31 155 96 aact:AA00863|5end_conserved_hypothetical_protein_596679..596909_POSITIVE 211 153 111 88 43 aact:AA01733|5end_hypothetical_protein_1171777..1172007_POSITIVE 211 44 3 52 1 aact:AA00036|5end_transposase_27267..27497_POSITIVE 207 76 34 185 135 aact:AA02783|5end_hypothetical_protein_1948825..1949055_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 290 122 82 65 25 aact:AA00036|3end_transposase_29254..29404_POSITIVE 261 149 108 86 50 aact:AA00892|3end_selenocysteine-specific_elongation_factor_(SelB_translation_factor)_619959..620109_POSITIVE 257 77 37 55 5 aact:AA02967|3end_elongation_factor_P_(EF-P)_2075914..2076064_POSITIVE 255 130 81 65 13 aact:AA01700|3end_hexulose-6-phosphate_isomerase_1155472..1155622_POSITIVE 243 118 79 56 23 aact:AA00446|3end_transposase_311566..311716_POSITIVE 238 117 72 105 66 aact:AA00162|3end_pilin_C_biogenesis_protein/protein_transport_protein_116086..116236_POSITIVE 223 130 84 142 97 aact:AA01366|3end_16S_rRNA_processing_protein_923721..923871_POSITIVE 220 68 29 143 96 aact:AA02252|3end_conserved_hypothetical_protein_1534696..1534846_POSITIVE 219 122 85 123 74 aact:AA00912|3end_short-chain_dehydrogenase_628032..628182_POSITIVE 218 79 31 111 52 aact:AA00862|3end_conserved_hypothetical_protein_596715..596865_POSITIVE 211 153 111 145 100 aact:AA01732|3end_multidrug_resistance_protein_A_1171914..1172064_POSITIVE 207 76 34 108 58 aact:AA02782|3end_outer_membrane_haemophore_receptor_(tonB_related)_1948828..1948978_POSITIVE 204 70 34 59 16 aact:AA00853|3end_hypothetical_protein_588859..589009_POSITIVE 203 180 137 80 26 aact:AA02964|3end_opacity_associated_protein_A_2074128..2074278_POSITIVE 203 43 3 91 51 aact:AA00849|3end_MraZ_cell_division_protein_586786..586936_POSITIVE 202 116 85 114 74 aact:AA00449|3end_conserved_hypothetical_protein_313909..314059_POSITIVE 199 125 82 101 36 aact:AA01194|3end_acyl_carrier_protein_819923..820073_POSITIVE 197 115 78 147 107 aact:AA00816|3end_lacZ_expression_regulator_561765..561915_POSITIVE 195 129 85 148 117 aact:AA00518|3end_conserved_hypothetical_protein_357213..357363_POSITIVE 193 118 80 127 86 aact:AA02204|3end_hypothetical_protein_1501262..1501412_POSITIVE