Origin IGS: cgaaattcccggatcatacgggttaaatcccgaatatttaaaacttgctcacgatttatcgtttcagttgtttttacaacttttcctaatccggtcacttcattgtctttccggtctttgattttttctgtaacgacatcgatggtttcaagttcttctttttttgtatcggctgtagcggcatagccgacgtagctataacaagaaacgaaaaggtaggttatgaggttaacacaaaattttgtgttgctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaagcataacgttacttgataagtatctttaatgatatataatgataactattatcattcggtgttattgataatagctttcgctgattaatacttatagattaaaaatgcgttgagcttcttcgttgttggtatcaaatcaacaacacaaatactgcttaagatgctgagtatgaaaatcgtcgttgatttcgttttttgataaacagtacagcgccgtttttattgctcattactaaagggaaaattgatgaaaaagcaacacaaaattttgtgttaacctcataacctaccttttcgtttcttgttatagctacgtcggctatgccgctacagccgatacaaaaaaagaagaacttgaaaccatcgatgtcgttacagaaaaaatcaaagaccggaaagacaatgaagtgaccggattaggaaaagttgtaaaaacaactgaaacgataaatcgtgagcaagttttaaatattcgggatttaacccgtatgatccgggaatttcg Mask Tandem Repeat Region ================================================ cgaaattcccggatcatacgggttaaatcccgaatatttaaaacttgctcacgatttatcgtttcagttgtttttacaacttttcctaatccggtcacttcattgtctttccggtctttgattttttctgtaacgacatcgatggtttcaagttcttctttttttgtatcggctgtagcggcatagccgacgtagctataacaagaaacgaaaaggtaggttatgaggttaacacaaaattttgtgttgctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Find is-nt database================================================ Query_seq: AA02202:AA02204|AA02202:AA02204:transferrin-binding protein 1 precursor:hypothetical protein:->->:1500604..1501112 509 cgaaattcccggatcatacgggttaaatcccgaatatttaaaacttgctcacgatttatcgtttcagttgtttttacaacttttcctaatccggtcacttcattgtctttccggtctttgattttttctgtaacgacatcgatggtttcaagttcttctttttttgtatcggctgtagcggcatagccgacgtagctataacaagaaacgaaaaggtaggttatgaggttaacacaaaattttgtgttgctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA02202:AA02204|AA02202:AA02204:transferrin-binding protein 1 precursor:hypothetical protein:->->:1500604..1501112 509 cgaaattcccggatcatacgggttaaatcccgaatatttaaaacttgctcacgatttatcgtttcagttgtttttacaacttttcctaatccggtcacttcattgtctttccggtctttgattttttctgtaacgacatcgatggtttcaagttcttctttttttgtatcggctgtagcggcatagccgacgtagctataacaagaaacgaaaaggtaggttatgaggttaacacaaaattttgtgttgctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA02202:AA02204|AA02202:AA02204:transferrin-binding protein 1 precursor:hypothetical protein:->->:1500604..1501112 509 cgaaattcccggatcatacgggttaaatcccgaatatttaaaacttgctcacgatttatcgtttcagttgtttttacaacttttcctaatccggtcacttcattgtctttccggtctttgattttttctgtaacgacatcgatggtttcaagttcttctttttttgtatcggctgtagcggcatagccgacgtagctataacaagaaacgaaaaggtaggttatgaggttaacacaaaattttgtgttgctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 9 Min: 18 Max: 248 Len: 231 Subject: UniRef90_P44970 Cluster: Probable transferrin-binding protein 1 precursor; n=8; Haemophilus influenzae|Rep: Probable transferrin-binding protein 1 precursor - Haemophilus influenzae HSP 1 e-value: 5.0E-16 bit: 85.9 Len: 222 Query Start:18 Query End:239 Subject Strand: null Subject Start: 7 Subject End: 93 ................. F C V N L I T Y L F V S C Y S Y V G Y A A T A D T K K - - - - - - - - - - - - - E E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R .............................................................................................................................................................................................................................................................................. ................. F R L S I I S C L L I S C Y V K A E T Q S I K D T K E A I S S E V D T Q S T E D S E L E T I S V T A E K V R D R K D N E V T G L G K I I K T S E S I S R E Q V L N I R D L T R .............................................................................................................................................................................................................................................................................. Subject: UniRef90_Q06987 Cluster: Transferrin-binding protein 1 precursor; n=4; Neisseria meningitidis|Rep: Transferrin-binding protein 1 precursor - Neisseria meningitidis serogroup B HSP 1 e-value: 4.0E-11 bit: 69.7 Len: 219 Query Start:18 Query End:236 Subject Strand: null Subject Start: 13 Subject End: 81 ................. C V N L I T Y L F V S C Y S Y V G Y A A T A D T K K E E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R ................................................................................................................................................................................................................................................................................. ................. C L S L M T A L P V - - - - Y A E N V Q A E Q A Q E K Q L D T I Q V K A K K Q K T R R D N E V T G L G K L V K S S D T L S K E Q V L N I R D L T R ................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q01996 Cluster: Transferrin-binding protein 1 precursor; n=14; Neisseria|Rep: Transferrin-binding protein 1 precursor - Neisseria gonorrhoeae HSP 1 e-value: 9.0E-11 bit: 68.6 Len: 219 Query Start:18 Query End:236 Subject Strand: null Subject Start: 13 Subject End: 81 ................. C V N L I T Y L F V S C Y S Y V G Y A A T A D T K K E E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R ................................................................................................................................................................................................................................................................................. ................. C L S L M T A L - - - - P A Y A E N V Q A G Q A Q E K Q L D T I Q V K A K K Q K T R R D N E V T G L G K L V K T A D T L S K E Q V L D I R D L T R ................................................................................................................................................................................................................................................................................. Subject: UniRef90_O85048 Cluster: Transferrin binding protein A; n=2; Moraxella catarrhalis|Rep: Transferrin binding protein A - Moraxella catarrhalis HSP 1 e-value: 2.0E-9 bit: 64.3 Len: 162 Query Start:18 Query End:179 Subject Strand: null Subject Start: 33 Subject End: 97 ................. A T A D T K K E E L E T I D - - - - - - - - - - - V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R .......................................................................................................................................................................................................................................................................................................................................... ................. A L A N T T A D K A E A T D K T N L V V V L D E T V V T A K K N A R K A N E V T G L G K V V K T A E T I N K E Q V L N I R D L T R .......................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q44166 Cluster: Tbp1 protein precursor; n=7; Pasteurellaceae|Rep: Tbp1 protein precursor - Actinobacillus pleuropneumoniae (Haemophilus pleuropneumoniae) HSP 1 e-value: 3.0E-8 bit: 60.1 Len: 216 Query Start:18 Query End:233 Subject Strand: null Subject Start: 5 Subject End: 73 ................. V N L I T Y L F V S C Y S Y V G Y A A T A D T K K E E L E T I D V V - T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R .................................................................................................................................................................................................................................................................................... ................. L N L I S L A L L S L F A V Q S Y A E Q A - - - - V Q L N D V Y V T G T K K K A H K K E N E V T G L G K V V K T P D T L S K E Q V L G I R D L T R .................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q44158 Cluster: Transferrin Receptor; n=5; Pasteurellaceae|Rep: Transferrin Receptor - Actinobacillus pleuropneumoniae (Haemophilus pleuropneumoniae) HSP 1 e-value: 2.0E-7 bit: 57.4 Len: 216 Query Start:18 Query End:233 Subject Strand: null Subject Start: 5 Subject End: 73 ................. V N L I T Y L F V S C Y S Y V G Y A A T A D T K K E E L E T I D V V - T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R .................................................................................................................................................................................................................................................................................... ................. L N L I S L A L L S L F A V Q S Y A E Q A - - - - V Q L N D V Y V T G T K K K A H K K E N E V T G L G K V V K T P D S L S K E Q V L G M R D L T R .................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q83Z23 Cluster: Transferrin-binding protein A; n=3; Histophilus somni|Rep: Transferrin-binding protein A - Haemophilus somnus (Histophilus somni) HSP 1 e-value: 3.0E-7 bit: 57.0 Len: 138 Query Start:18 Query End:155 Subject Strand: null Subject Start: 42 Subject End: 87 ................. E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R .................................................................................................................................................................................................................................................................................................................................................................. ................. E L E A I Q V Q A K H E I S R H D N E V T G L G K V V K S S E D I D K E L I L N I R D L T R .................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q9JTK4 Cluster: Lactoferrin-binding protein A precursor; n=8; Neisseria|Rep: Lactoferrin-binding protein A precursor - Neisseria meningitidis serogroup A HSP 1 e-value: 3.0E-7 bit: 56.6 Len: 231 Query Start:18 Query End:248 Subject Strand: null Subject Start: 2 Subject End: 83 ................. N T K F C V N L I T Y L F V S C Y S Y V G Y A A T A D T - - - - - - K K E E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R ..................................................................................................................................................................................................................................................................... ................. N K K H G F S L T L T A L A I A A A F P S Y A A N P E T A A S D A A Q S Q S L K E I T V R A A K V - G R R S K E A T G L G K I V K T S E T L N K E Q V L G I R D L T R ..................................................................................................................................................................................................................................................................... Subject: UniRef90_A3MYW8 Cluster: Truncated transferrin-binding protein 1; n=2; Actinobacillus pleuropneumoniae|Rep: Truncated transferrin-binding protein 1 - Actinobacillus pleuropneumoniae serotype 5b (strain L20) HSP 1 e-value: 4.0E-6 bit: 53.1 Len: 201 Query Start:18 Query End:218 Subject Strand: null Subject Start: 17 Subject End: 77 ................. Y L F V S C Y S Y V G Y A A T A D T K K E E L E T I D V V T E K I K D R K D N E V T G L G K V V K T T E T I N R E Q V L N I R D L T R ................................................................................................................................................................................................................................................................................................... ................. F L I L S A Q T Y - - - - - - A K Q N E T E L D T V T V K A K T E I H R R Q N E V T G L G K V T K I S K D L D K E Q V Q N I R D L T R ................................................................................................................................................................................................................................................................................................... cgaaattcccggatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 5 End: 118 .... M P G S Y G L N P E Y L K L A H D L S F Q L F L Q L F L I R S L H C L S G L ....................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 13 End: 183 ............ M I R V K S R I F K T C S R F I V S V V F T T F P N P V T S L S F R S L I F S V T T S M V S S S S F F V S A V A A ...................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 102 End: 347 ..................................................................................................... M V F P V F D F F C N D I D G F K F F F F C I G C S G I A D V A I T R N E K V G Y E V N T K F C V A F S S I F P L V M S .................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 329 End: 418 ........................................................................................................................................................................................................................................................................................................................................ M F I L S I L S S I C V V D L I P T T K K L N A F L I Y K Y ........................................................................................... Protein_Len: 33 Strand: - Start: 310 End: 408 ..................................................................................................................................................................................................................................................................................................................... F V F D V V I K M S L M K L L I Q T T S K I G V V F F S L A N K M ..................................................................................................... Protein_Len: 34 Strand: - Start: 98 End: 199 ................................................................................................. K M T K G T K S K K Q L S M S P K L N K K K Q I P Q L P M A S T A M ...................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 224 .. Q E R N I T E T T K V V K G L G T V E N D K R D K I K E T V V D I T E L E E K K T D A T A A Y G V Y S Y C S V F L Y T M ............................................................................................................................................................................................................................................................................................. cgaaattcccggatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cgaaattcccggatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 50 HP_score: -3.3 Tail_Score: -3.60094 Start: 432 End: 460 Full_Region: ATTAATCAGCGAAAG CTATTATCAAT AACACCG AATGATAATAG TTATCATTATATATC ...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTATCAATAACACCGAATGATAATAG................................................. TransTerm Strand: - Conf: 44 HP_score: -3.3 Tail_Score: -2.82862 Start: 432 End: 460 Full_Region: gatatataatgataa ctattatcatt cggtgtt attgataatag ctttcgctgattaat ...............................................................................................................................................................................................................................................................................................................................................................................................................................................ctattatcattcggtgttattgataatag................................................. Find igs database================================================ Query_seq: AA02202:AA02204|AA02202:AA02204:transferrin-binding protein 1 precursor:hypothetical protein:->->:1500604..1501112 509 cgaaattcccggatcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Intra-Species Hit: Count: 1 Min: 250 Max: 509 Len: 260 Subject: aact_AA02202_AA02204|transferrin-binding protein 1 precursor:hypothetical protein|POSITIVE:POSITIVE|[1500604,1501112]|509 HSP 1 e-value: 1.0E-145 bit: 515.0 Len: 260 Query Start:250 Query End:509 Subject Strand: POSITIVE Subject Start: 250 Subject End: 509 .........................................................................................................................................................................................................................................................ctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca .........................................................................................................................................................................................................................................................ctttttcatcaattttccctttagtaatgagcaataaaaacggcgctgtactgtttatcaaaaaacgaaatcaacgacgattttcatactcagcatcttaagcagtatttgtgttgttgatttgataccaacaacgaagaagctcaacgcatttttaatctataagtattaatcagcgaaagctattatcaataacaccgaatgataatagttatcattatatatcattaaagatacttatcaagtaacgttatgcttca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUUUCAUCAAUUUUCCCUUUAGUAAUGAGCAAUAAAAACGGCGCUGUACUGUUUAUCAAAAAACGAAAUCAACGACGAUUUUCAUACUCAGCAUCUUAAGCAGUAUUUGUGUUGUUGAUUUGAUACCAACAACGAAGAAGCUCAACGCAUUUUUAAUCUAUAAGUAUUAAUCAGCGAAAGCUAUUAUCAAUAACACCGAAUGAUAAUAGUUAUCAUUAUAUAUCAUUAAAGAUACUUAUCAAGUAACGUUAUGCUUCA .......(((((.......((((....)))).......((((((((.((((((((((.........((((((......))))))..............))))))))))..))))))))...)))))............(((((..((((.....(((....(((((((((....(((....)))................((((((((((((....))))).)))))))...)))))))))....)))))))..))))). (-51.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAGCAUAACGUUACUUGAUAAGUAUCUUUAAUGAUAUAUAAUGAUAACUAUUAUCAUUCGGUGUUAUUGAUAAUAGCUUUCGCUGAUUAAUACUUAUAGAUUAAAAAUGCGUUGAGCUUCUUCGUUGUUGGUAUCAAAUCAACAACACAAAUACUGCUUAAGAUGCUGAGUAUGAAAAUCGUCGUUGAUUUCGUUUUUUGAUAAACAGUACAGCGCCGUUUUUAUUGCUCAUUACUAAAGGGAAAAUUGAUGAAAAAG .(((((.((((((......((((((((..((((((((((..(((((((.....)))))))..))))))))))...((((....))))....))))))))...........)))))).)))))...(((((((((.....)))))))))..........(((.((.((.((((((((((((.((.((((((((..((((......))))))).))))).)))))))).)))))).)))).))).................. (-62.73) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 319 45 1 173 135 aact:AA02008|5end_conserved_hypothetical_protein_1366044..1366274_POSITIVE 265 151 112 67 25 aact:AA01973|5end_acetate_kinase_1334424..1334654_POSITIVE 263 145 102 107 67 aact:AA01556|5end_ABC_transporter_ATP-binding_protein_1044218..1044448_POSITIVE 261 125 83 178 130 aact:AA01941|5end_hypothetical_protein_1312480..1312710_POSITIVE 260 190 142 225 180 aact:AA02927|5end_hypothetical_protein_2048233..2048463_POSITIVE 260 190 142 128 83 aact:AA02926|5end_hypothetical_protein_2048136..2048366_POSITIVE 257 154 111 74 25 aact:AA00750|5end_periplasmic_D-galactose-binding_ABC_transport_protein_514904..515134_POSITIVE 253 88 41 208 163 aact:AA00992|5end_ribonuclease_BN_693661..693891_POSITIVE 250 150 101 174 114 aact:AA01903|5end_hypothetical_protein_1283983..1284213_POSITIVE 245 143 101 61 17 aact:AA02842|5end_conserved_hypothetical_protein_1996574..1996804_POSITIVE 244 187 146 46 9 aact:AA02003|5end_purine_nucleotide_synthesis_repressor_protein_1360633..1360863_POSITIVE 240 54 17 223 181 aact:AA02368|5end_conserved_hypothetical_protein_1623544..1623774_POSITIVE 240 120 75 163 121 aact:AA01651|5end_hypothetical_protein_1119796..1120026_POSITIVE 240 48 1 130 83 aact:AA00600|5end_ribosome_recycling_factor_(ribosome_releasing_factor)_408305..408535_POSITIVE 239 179 134 183 136 aact:AA01655|5end_hypothetical_protein_1121187..1121417_POSITIVE 236 79 39 71 41 aact:AA02964|5end_opacity_associated_protein_A_2072738..2072968_POSITIVE 236 89 42 79 31 aact:AA00086|5end_2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy_late_synthase_63437..63667_POSITIVE 234 78 40 206 163 aact:AA00370|5end_30S_ribosomal_protein_S10_248620..248850_POSITIVE 233 75 41 160 129 aact:AA02824|5end_conserved_hypothetical_protein_1986131..1986361_POSITIVE 233 79 31 170 131 aact:AA01976|5end_colicin_V_production_protein_1336513..1336743_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 319 45 1 131 93 aact:AA02007|3end_hypothetical_protein_1366082..1366232_POSITIVE 263 145 102 132 92 aact:AA01555|3end_ABC_transporter,_ATP-binding_protein_1044323..1044473_POSITIVE 260 190 142 63 18 aact:AA02925|3end_conserved_hypothetical_protein_2048151..2048301_POSITIVE 249 149 103 142 107 aact:AA01467|3end_mannose-specific_phosphotransferase_system_IID_987214..987364_POSITIVE 248 49 11 58 15 aact:AA01878|3end_hydroxyacylglutathione_hydrolase_1265609..1265759_POSITIVE 244 118 83 150 110 aact:AA01939|3end_NAD(P)_transhydrogenase_subunit_beta_1312540..1312690_POSITIVE 241 62 28 99 66 aact:AA00726|3end_apolipoprotein_N-acyltransferase,_copper_499886..500036_POSITIVE 240 120 75 136 94 aact:AA01650|3end_maltose_transport_inner_membrane_protein_1119849..1119999_POSITIVE 240 48 1 93 46 aact:AA00598|3end_hypothetical_protein_408348..408498_POSITIVE 239 179 134 79 32 aact:AA01654|3end_periplasmic_maltose-binding_protein_precursor_1121163..1121313_POSITIVE 236 89 42 85 37 aact:AA00085|3end_menaquinone-specific_isochorismate;_isochorismate_mutase_63523..63673_POSITIVE 233 75 41 118 87 aact:AA02823|3end_exodeoxyribonuclease_V_gamma_chain_1986169..1986319_POSITIVE 232 49 4 91 53 aact:AA02889|3end_hypothetical_protein_2025271..2025421_POSITIVE 232 80 43 65 14 aact:AA02525|3end_conserved_hypothetical_protein_1755302..1755452_POSITIVE 232 138 92 132 67 aact:AA00679|3end_cytoplasmic_axial_filament_(Ribonuclease_G)_464840..464990_POSITIVE 226 147 102 49 2 aact:AA02005|3end_vancomycin_sensitivity;_SanA_protein_1364020..1364170_POSITIVE 225 47 2 144 100 aact:AA02026|3end_probable_serine_proteinase_1380059..1380209_POSITIVE 224 78 32 63 13 aact:AA01577|3end_conserved_hypothetical_transmembrane_protein_1064240..1064390_POSITIVE 224 83 42 99 52 aact:AA01168|3end_6-phosphogluconolactonase_802018..802168_POSITIVE 223 120 71 143 96 aact:AA02443|3end_cytochrome_C_related_protein_1686590..1686740_POSITIVE