Origin IGS: ataaccatgggcatttggataatctgattttctaatacaattccaaaaatctttatgataaagatcactaagtgttgcgacttgctgaccgctaaataatagccaactggctaagcagtttaaatccttataactatcaaatagttcgatttctttggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taattccttaatacgaaaaagtgcggtcaaaatccattgtgctttttgaccgcactttgatctgcaccccaaaataacattttttagagtgttaatatatctaagcaggcaacatgataagtaatccacaatattgtaaagtcgcggttttatttacataattttcgtctttagattcatgcaaatattgagatggtactatacctccttcattttgaaataaggtatagttatactaattttttatttgataaagaacttttatttgttatctacgcactatatcaaattcaatttctacatcaaaataaaataaaccattttggtatatcatcatatagttagataactcattatcatattatcttcaacagttaatattttgcaaaatcggcttaagtaaataaaccaaccttgcgtagaataactttttagtcacattgttcataaatacgctgttttaataaatactcctctagctatcacaatttatcaaattttgataagcgatctgtttacagatctctgtattgtagttttacttacttaccagtgcacttgtgccgataaccttaaaatcatttttgacagtaattgtacatatagttatagtgccttgaaaaccatccaaagaaatcgaactatttgatagttataaggatttaaactgcttagccagttggctattatttagcggtcagcaagtcgcaacacttagtgatctttatcataaagatttttggaattgtattagaaaatcagattatccaaatgcccatggttat Mask Tandem Repeat Region ================================================ ataaccatgggcatttggataatctgattttctaatacaattccaaaaatctttatgataaagatcactaagtgttgcgacttgctgaccgctaaataatagccaactggctaagcagtttaaatccttataactatcaaatagttcgatttctttggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Find is-nt database================================================ Query_seq: AA02008:AA02010|AA02008:AA02010:conserved hypothetical protein:peptide methionine sulfoxide reductase; cytochrome C-TYPE biogenesis protein; transcriptional regulator:->->:1366535..1367319 785 ataaccatgggcatttggataatctgattttctaatacaattccaaaaatctttatgataaagatcactaagtgttgcgacttgctgaccgctaaataatagccaactggctaagcagtttaaatccttataactatcaaatagttcgatttctttggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA02008:AA02010|AA02008:AA02010:conserved hypothetical protein:peptide methionine sulfoxide reductase; cytochrome C-TYPE biogenesis protein; transcriptional regulator:->->:1366535..1367319 785 ataaccatgggcatttggataatctgattttctaatacaattccaaaaatctttatgataaagatcactaagtgttgcgacttgctgaccgctaaataatagccaactggctaagcagtttaaatccttataactatcaaatagttcgatttctttggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA02008:AA02010|AA02008:AA02010:conserved hypothetical protein:peptide methionine sulfoxide reductase; cytochrome C-TYPE biogenesis protein; transcriptional regulator:->->:1366535..1367319 785 ataaccatgggcatttggataatctgattttctaatacaattccaaaaatctttatgataaagatcactaagtgttgcgacttgctgaccgctaaataatagccaactggctaagcagtttaaatccttataactatcaaatagttcgatttctttggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 1 Max: 156 Len: 156 Subject: UniRef90_Q3EHT3 Cluster: Hypothetical protein; n=1; Actinobacillus succinogenes 130Z|Rep: Hypothetical protein - Actinobacillus succinogenes 130Z HSP 1 e-value: 2.0E-15 bit: 85.5 Len: 150 Query Start:1 Query End:150 Subject Strand: null Subject Start: 115 Subject End: 164 I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I Q N F D G Y K D L N C L S S W L L F S G Q Q V G N F T E L F N R D F W H C I R K S D Y P E A D G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7VL97 Cluster: Hypothetical protein; n=1; Haemophilus ducreyi|Rep: Hypothetical protein - Haemophilus ducreyi HSP 1 e-value: 2.0E-15 bit: 85.1 Len: 150 Query Start:1 Query End:150 Subject Strand: null Subject Start: 143 Subject End: 192 I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I Q S F Q G Y K D L N C L A S W L L F S G N Q V G S L E D L F N K D F W H C V R Q S D Y P R A D G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q58Z98 Cluster: Hypothetical protein; n=1; Haemophilus influenzae biotype aegyptius|Rep: Hypothetical protein - Haemophilus influenzae biotype aegyptius HSP 1 e-value: 2.0E-15 bit: 85.1 Len: 156 Query Start:1 Query End:156 Subject Strand: null Subject Start: 114 Subject End: 165 K E I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K I I D Q F K G Y K D L N C L T S W L L F S G Q Q V S S L D E L Y K K D F W H C V R L S D Y P S A E G Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_P44243 Cluster: Hypothetical protein HI1523; n=1; Haemophilus influenzae|Rep: Hypothetical protein HI1523 - Haemophilus influenzae HSP 1 e-value: 2.0E-14 bit: 82.4 Len: 153 Query Start:1 Query End:153 Subject Strand: null Subject Start: 130 Subject End: 180 E I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K I N D F K G Y K D L N C L A S W L L F S G Q Q V G S V E A L F A K D F W N C V R Q S D Y P T A E G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7VPD0 Cluster: Hypothetical protein; n=1; Haemophilus ducreyi|Rep: Hypothetical protein - Haemophilus ducreyi HSP 1 e-value: 5.0E-14 bit: 80.9 Len: 150 Query Start:1 Query End:150 Subject Strand: null Subject Start: 111 Subject End: 160 I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I N A F D G Y K D L A S L S S W L L F S G Q Q V A T F D D L F K K D F W C C I R Q S D Y P R A E G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q65WH8 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 1.0E-11 bit: 72.8 Len: 150 Query Start:1 Query End:150 Subject Strand: null Subject Start: 109 Subject End: 158 I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I K G F D G Y I N E H I L C S W L C F S G Q Q V K T L D E L F K E D F W N C I R K S D Y P S A D G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_UPI0000397494 Cluster: hypothetical protein Haso02001239; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02001239 - Haemophilus somnus 2336 HSP 1 e-value: 1.0E-9 bit: 66.2 Len: 153 Query Start:1 Query End:153 Subject Strand: null Subject Start: 112 Subject End: 162 E I E L F D S Y K D L N C L A S W L L F S G Q Q V A T L S D L Y H K D F W N C I R K S D Y P N A H G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K I N D F N G F K D L N T I A S W L L F S G Q Q V S S F E E L F S K T F W N G I K L A D Y P S A E D Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 149 End: 244 .................................................................................................................................................... M S L D G F Q G T I T I C T I T V K N D F K V I G T S A L V S K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 584 End: 682 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V P S Q Y L H E S K D E N Y V N K T A T L Q Y C G L L I M L P A ....................................................................................................... Protein_Len: 51 Strand: + Start: 633 End: 785 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K P R L Y N I V D Y L S C C L L R Y I N T L K N V I L G C R S K C G Q K A Q W I L T A L F R I K E L Protein_Len: 56 Strand: - Start: 444 End: 611 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y S S I G F H N I K N Q H L F Q I Q Y L A Y I V F L L E K D F L F N T Y S Y R I E F H L L Y L V M E I N A H M .............................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 219 End: 335 .......................................................................................................................................................................................................................... R C L H V P L Y T F S C Y L S R Y V S R K D F N S L N H Y S S S Y K N F C R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 140 End: 346 ........................................................................................................................................... L A S Y S Y T C N S D F I I K L N D A C T C Q Y T L L V V I C L D T F L D S I L I Q Y I T I A L P T N I L V A Y K H V M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: - Start: 1 End: 150 Y G H A N P Y D S K R I C N W F D K H Y L D S L T A V Q Q G S F L L W S A L C N L D K Y S D F L E M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 88 Start: 173 End: 202 ............................................................................................................................................................................TTTGACAGTAATTGTACATATAGTTATAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 624 End: 653 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAGTCGCGGTTTTATTTACATAAT.................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 75 HP_score: -5.8 Tail_Score: -4.69622 Start: 50 End: 64 Full_Region: cgcaacacttagtga tcttta tca taaaga tttttggaattgtat .................................................tctttatcataaaga................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 71 HP_score: -6.7 Tail_Score: -3.92542 Start: 100 End: 113 Full_Region: aggatttaaactgct tagcc agtt ggcta ttatttagcggtcag ...................................................................................................tagccagttggcta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 70 HP_score: -3.7 Tail_Score: -5.16132 Start: 456 End: 472 Full_Region: CTAACTATATGATGA TATACCA AAA TGGTTTA TTTTATTTTGATGTA .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCAAAATGGTTTA......................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -14.4 Tail_Score: -4.87626 Start: 731 End: 765 Full_Region: GGGGTGCAGATCAAA GTGCGGTCAAAAAGCA CAA TGGATTTTGACCGCAC TTTTTCGTATTAAGG ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGTCAAAAAGCACAATGGATTTTGACCGCAC.................... Find igs database================================================ Query_seq: AA02008:AA02010|AA02008:AA02010:conserved hypothetical protein:peptide methionine sulfoxide reductase; cytochrome C-TYPE biogenesis protein; transcriptional regulator:->->:1366535..1367319 785 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggatggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Intra-Species Hit: Count: 1 Min: 159 Max: 785 Len: 627 Subject: aact_AA02008_AA02010|conserved hypothetical protein:peptide methionine sulfoxide reductase; cytochrome C-TYPE biogenesis protein; transcriptional regulator|POSITIVE:POSITIVE|[1366535,1367319]|785 HSP 1 e-value: 0.0 bit: 1243.0 Len: 627 Query Start:159 Query End:785 Subject Strand: POSITIVE Subject Start: 159 Subject End: 785 ..............................................................................................................................................................atggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta ..............................................................................................................................................................atggttttcaaggcactataactatatgtacaattactgtcaaaaatgattttaaggttatcggcacaagtgcactggtaagtaagtaaaactacaatacagagatctgtaaacagatcgcttatcaaaatttgataaattgtgatagctagaggagtatttattaaaacagcgtatttatgaacaatgtgactaaaaagttattctacgcaaggttggtttatttacttaagccgattttgcaaaatattaactgttgaagataatatgataatgagttatctaactatatgatgatataccaaaatggtttattttattttgatgtagaaattgaatttgatatagtgcgtagataacaaataaaagttctttatcaaataaaaaattagtataactataccttatttcaaaatgaaggaggtatagtaccatctcaatatttgcatgaatctaaagacgaaaattatgtaaataaaaccgcgactttacaatattgtggattacttatcatgttgcctgcttagatatattaacactctaaaaaatgttattttggggtgcagatcaaagtgcggtcaaaaagcacaatggattttgaccgcactttttcgtattaaggaatta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUGGUUUUCAAGGCACUAUAACUAUAUGUACAAUUACUGUCAAAAAUGAUUUUAAGGUUAUCGGCACAAGUGCACUGGUAAGUAAGUAAAACUACAAUACAGAGAUCUGUAAACAGAUCGCUUAUCAAAAUUUGAUAAAUUGUGAUAGCUAGAGGAGUAUUUAUUAAAACAGCGUAUUUAUGAACAAUGUGACUAAAAAGUUAUUCUACGCAAGGUUGGUUUAUUUACUUAAGCCGAUUUUGCAAAAUAUUAACUGUUGAAGAUAAUAUGAUAAUGAGUUAUCUAACUAUAUGAUGAUAUACCAAAAUGGUUUAUUUUAUUUUGAUGUAGAAAUUGAAUUUGAUAUAGUGCGUAGAUAACAAAUAAAAGUUCUUUAUCAAAUAAAAAAUUAGUAUAACUAUACCUUAUUUCAAAAUGAAGGAGGUAUAGUACCAUCUCAAUAUUUGCAUGAAUCUAAAGACGAAAAUUAUGUAAAUAAAACCGCGACUUUACAAUAUUGUGGAUUACUUAUCAUGUUGCCUGCUUAGAUAUAUUAACACUCUAAAAAAUGUUAUUUUGGGGUGCAGAUCAAAGUGCGGUCAAAAAGCACAAUGGAUUUUGACCGCACUUUUUCGUAUUAAGGAAUUA ..........(((((...........(((((..(((..((((....))))..))).((.....))....))))).((((((((((......((((((((....((((((....))))))..((((((.....))))))..(((((..((..((((.....(((((..(((((.((((((.........((((((....)))))).....((((((((((((((......)))))))))))))).))))))...)))))...)))))..((((((.((((((((((((((((((((..((((.((((((((......)))))))).))))...))).......)))))))...))))))))..........)).)))))).................((((((((((.((((.....))))))))))))))....))))..(((((((((((.((.......))...))))))))))).....))....))))).)))))))).))))))))))...))))).(((((.........((((((((((.......))))))))))..((..(((((((((((((((..(.....)..))))))))))))))).))...)))))...... (-153.51) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUCCUUAAUACGAAAAAGUGCGGUCAAAAUCCAUUGUGCUUUUUGACCGCACUUUGAUCUGCACCCCAAAAUAACAUUUUUUAGAGUGUUAAUAUAUCUAAGCAGGCAACAUGAUAAGUAAUCCACAAUAUUGUAAAGUCGCGGUUUUAUUUACAUAAUUUUCGUCUUUAGAUUCAUGCAAAUAUUGAGAUGGUACUAUACCUCCUUCAUUUUGAAAUAAGGUAUAGUUAUACUAAUUUUUUAUUUGAUAAAGAACUUUUAUUUGUUAUCUACGCACUAUAUCAAAUUCAAUUUCUACAUCAAAAUAAAAUAAACCAUUUUGGUAUAUCAUCAUAUAGUUAGAUAACUCAUUAUCAUAUUAUCUUCAACAGUUAAUAUUUUGCAAAAUCGGCUUAAGUAAAUAAACCAACCUUGCGUAGAAUAACUUUUUAGUCACAUUGUUCAUAAAUACGCUGUUUUAAUAAAUACUCCUCUAGCUAUCACAAUUUAUCAAAUUUUGAUAAGCGAUCUGUUUACAGAUCUCUGUAUUGUAGUUUUACUUACUUACCAGUGCACUUGUGCCGAUAACCUUAAAAUCAUUUUUGACAGUAAUUGUACAUAUAGUUAUAGUGCCUUGAAAACCAU ...(((........((.(((((((((((((((..(.....)..)))))))))))))))..)).((((..(((((((((((((....))))))))...((((...(((((((...((((((((((..((((((((..(((((..(((..(((((..(((.........((((((........((((((..(((.(((((((((((((..(((.....)))...)))))))))...)))).)))..)))))).))))))..........((((((((((((........................(((((((..(((.(((.....))).))).........(((((((((............))))))..)))......))))))).......((.(((......))).)).....))))))).))))).............)))..)))))..)))..)))))...............(((((((.((((.....)))).)))).)))((((((....))))))...))))))).)..))))))).)))....))).).)))...)))).............)))))...((((((((....)))))))).))))...)))...... (-127.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 677 620 571 151 102 aact:AA00126|5end_conserved_hypothetical_protein_91053..91283_POSITIVE 545 613 571 208 166 aact:AA02754|5end_conserved_hypothetical_protein_1928949..1929179_POSITIVE 536 619 571 128 80 aact:AA02362|5end_conserved_hypothetical_protein_1619905..1620135_POSITIVE 521 610 561 81 31 aact:AA02378|5end_hypothetical_protein_1627753..1627983_POSITIVE 507 613 571 157 115 aact:AA02113|5end_conserved_hypothetical_protein_1442183..1442413_POSITIVE 495 596 554 70 32 aact:AA01176|5end_hypothetical_protein_806309..806539_POSITIVE 487 585 554 151 120 aact:AA01267|5end_degenerate_transposase_fragment_862267..862497_POSITIVE 485 618 571 65 14 aact:AA00697|5end_hypothetical_protein_476999..477229_POSITIVE 484 610 563 194 147 aact:AA02902|5end_aerobic_respiration_control_protein_2031171..2031401_POSITIVE 468 581 554 142 114 aact:AA00145|5end_probable_degenerate_transposase_fragment_105046..105276_POSITIVE 467 610 561 162 113 aact:AA02340|5end_hypothetical_protein_1598887..1599117_POSITIVE 463 579 554 146 121 aact:AA02937|5end_conserved_hypothetical_protein_2056379..2056609_POSITIVE 463 579 554 81 56 aact:AA02681|5end_hypothetical_protein_1865749..1865979_POSITIVE 451 581 554 133 106 aact:AA01075|5end_hypothetical_protein_745605..745835_POSITIVE 449 610 570 212 172 aact:AA01625|5end_riboflavin_synthase,_beta_chain_1099964..1100194_POSITIVE 440 610 565 188 141 aact:AA02893|5end_oligopeptide_transport_system_permease_protein,_N-terminal_2027201..2027431_POSITIVE 436 610 561 122 77 aact:AA01673|5end_riboflavin_synthase,_alpha_chain_1131477..1131707_POSITIVE 433 609 562 211 161 aact:AA00541|5end_conserved_hypothetical_protein_370140..370370_POSITIVE 433 609 562 121 71 aact:AA00540|5end_hypothetical_protein_370050..370280_POSITIVE 417 610 570 201 159 aact:AA01830|5end_2,3-cyclic-nucleotide_2-phosphodiesterase_1231556..1231786_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 545 613 571 47 5 aact:AA02751|3end_L-lactate_permease_1928868..1929018_POSITIVE 536 619 571 90 42 aact:AA02360|3end_threonine_synthase_1619947..1620097_POSITIVE 507 613 571 78 36 aact:AA02112|3end_cell_division_protein_1442184..1442334_POSITIVE 505 610 570 57 17 aact:AA00010|3end_transposase_orfB_fragment_6297..6447_POSITIVE 495 596 554 76 38 aact:AA01175|3end_6-phosphogluconate_dehydrogenase_806395..806545_POSITIVE 487 585 554 55 24 aact:AA01266|3end_hypothetical_protein_862251..862401_POSITIVE 485 618 571 92 41 aact:AA00696|3end_iron(III)_ABC_transporter,_periplasmic_iron-compound-binding_protein_477106..477256_POSITIVE 484 610 563 81 34 aact:AA02899|3end_oligopeptide_ABC_transporter,_ATP-binding_protein_2031138..2031288_POSITIVE 480 610 570 149 108 aact:AA00697|3end_hypothetical_protein_477174..477324_POSITIVE 467 610 561 80 31 aact:AA02338|3end_conserved_hypothetical_protein;_possible_integral_membrane_protein_1598885..1599035_POSITIVE 463 579 554 60 35 aact:AA02936|3end_lipoprotein_E_precursor;_outer_membrane_protein_P4_precursor;_acid_phosphatase_2056373..2056523_POSITIVE 463 579 554 63 38 aact:AA02679|3end_formate_dehydrogenase,_gamma_subunit_1865811..1865961_POSITIVE 458 610 570 78 38 aact:AA02781|3end_protein-export_membrane_protein_1945981..1946131_POSITIVE 451 581 554 71 44 aact:AA01074|3end_diacylglycerol_kinase_745623..745773_POSITIVE 449 610 570 69 29 aact:AA01624|3end_glucose-6-phosphate_isomerase_1099901..1100051_POSITIVE 440 610 565 84 37 aact:AA02892|3end_oligopeptide_ABC_transporter,_periplasmic-binding_protein_2027177..2027327_POSITIVE 436 610 561 83 38 aact:AA01672|3end_conserved_hypothetical_protein_1131518..1131668_POSITIVE 428 610 565 86 39 aact:AA02280|3end_conserved_hypothetical_protein_1552767..1552917_POSITIVE 423 604 563 86 43 aact:AA00221|3end_NADP-specific_glutamate_dehydrogenase_153865..154015_POSITIVE 422 610 570 76 38 aact:AA01922|3end_translation_initiation_factor_IF2_1297279..1297429_POSITIVE