Origin IGS: attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaaagaatagaaagtttttcacctgaaatgtgtaaagaattagagttttatgtttatcgtttaattgatccaagaaatggttaaacttttatactggtaaatgaaaggatcaccgtgttttttaacatgtaaacacctctgtttagtatgataaaaaaattgatgattactaggggaaagatgaaatttccctcaactatttgagaattagagaaattcataatgcaggtttaaaggttattcatattattgaccgttataaaatgacacataagattgctcatgaagttgagggtgcattaatttaggcttatccaggattttcaaatattcaaagtggggcgggaataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tattttactatgtgaaataaaattaaatttgatttatcgcgctgaaagtggttaatttatcgcgcgcagcatcattataatactttatttcaagatgagaagcatttattacactatattcattattcccgccccactttgaatatttgaaaatcctggataagcctaaattaatgcaccctcaacttcatgagcaatcttatgtgtcattttataacggtcaataatatgaataacctttaaacctgcattatgaatttctctaattctcaaatagttgagggaaatttcatctttcccctagtaatcatcaatttttttatcatactaaacagaggtgtttacatgttaaaaaacacggtgatcctttcatttaccagtataaaagtttaaccatttcttggatcaattaaacgataaacataaaactctaattctttacacatttcaggtgaaaaactttctattctttttttatagaattctctttagttcacttttatggtacatgcatcccagcttgtactgctagctatttacctctgtaaattttctgccttttactattgtaacaagcatgtctattctaaaagcccattttctttccgactagtaaagattcattgtgatcaatgattatttatgaatatacattgtacataaatcaaattatgcaatttcttctattatttaataattttgtggacatttattcaatttttatcacactaaagtgttataatccgcatggatttatactctcattttaacaaccaatatttagttaattcggaatcaatcaactatctatttctgacattttaaggagttaat Mask Tandem Repeat Region ================================================ attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaaagaatagaaagtttttcacctgaaatgtgtaaagaattagagttttatgtttatcgtttaattgatccaagaaatggttaaacttttatactggtaaatgaaaggatcaccgtgttttttaacatgtaaacacctctgtttagtatgataaaaaaattgatgattactaggggaaagatgaaatttccctcaactatttgagaattagagaaattcataatgcaggtttaaaggttattcatattattgaccgttataaaatgacacataagattgctcatgaagttgagggtgcattaatttaggcttatccaggattttcaaatattcaaagtggggcgggaataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Find is-nt database================================================ Query_seq: AA02006:AA02007|AA02006:AA02007:PEP--fructosephosphotransferase system repressor, DeoR family:hypothetical protein:->->:1365054..1365887 834 attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaaagaatagaaagtttttcacctgaaatgtgtaaagaattagagttttatgtttatcgtttaattgatccaagaaatggttaaacttttatactggtaaatgaaaggatcaccgtgttttttaacatgtaaacacctctgtttagtatgataaaaaaattgatgattactaggggaaagatgaaatttccctcaactatttgagaattagagaaattcataatgcaggtttaaaggttattcatattattgaccgttataaaatgacacataagattgctcatgaagttgagggtgcattaatttaggcttatccaggattttcaaatattcaaagtggggcgggaataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA02006:AA02007|AA02006:AA02007:PEP--fructosephosphotransferase system repressor, DeoR family:hypothetical protein:->->:1365054..1365887 834 attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaaagaatagaaagtttttcacctgaaatgtgtaaagaattagagttttatgtttatcgtttaattgatccaagaaatggttaaacttttatactggtaaatgaaaggatcaccgtgttttttaacatgtaaacacctctgtttagtatgataaaaaaattgatgattactaggggaaagatgaaatttccctcaactatttgagaattagagaaattcataatgcaggtttaaaggttattcatattattgaccgttataaaatgacacataagattgctcatgaagttgagggtgcattaatttaggcttatccaggattttcaaatattcaaagtggggcgggaataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA02006:AA02007|AA02006:AA02007:PEP--fructosephosphotransferase system repressor, DeoR family:hypothetical protein:->->:1365054..1365887 834 attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaaagaatagaaagtttttcacctgaaatgtgtaaagaattagagttttatgtttatcgtttaattgatccaagaaatggttaaacttttatactggtaaatgaaaggatcaccgtgttttttaacatgtaaacacctctgtttagtatgataaaaaaattgatgattactaggggaaagatgaaatttccctcaactatttgagaattagagaaattcataatgcaggtttaaaggttattcatattattgaccgttataaaatgacacataagattgctcatgaagttgagggtgcattaatttaggcttatccaggattttcaaatattcaaagtggggcgggaataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 5 Min: 365 Max: 708 Len: 344 Subject: UniRef90_A0WIS1 Cluster: Hypothetical protein; n=1; Marinomonas sp. MWYL1|Rep: Hypothetical protein - Marinomonas sp. MWYL1 HSP 1 e-value: 2.0E-16 bit: 62.4 Len: 261 Query Start:448 Query End:708 Subject Strand: null Subject Start: 33 Subject End: 109 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y T G K * K D H R V F * H V N T S V X X X X X X X X X X X X X E I S L N Y L R I R E I H N A G L K V I H I I D R Y K M T H K I A H E V E G A L I * A Y P G F S N I Q S G A G .............................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y I G K G K G N R V F A H V R G D I E D D - - - - - - - - - - S L S E K M T R I R S I H L A G F D V A H V I H R H G L S E S S A F E V E A A L I D A Y P G I T N I M D G H G .............................................................................................................................. HSP 2 e-value: 2.0E-16 bit: 47.0 Len: 93 Query Start:365 Query End:457 Subject Strand: null Subject Start: 5 Subject End: 35 ............................................................................................................................................................................................................................................................................................................................................................................ R I E S F S P E M C K E L E F Y V Y R L I D P R N G * T F I L ......................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................ K I D S F P P E V A E K L Q Y Y V Y R L I D P R N G E T F Y I ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A1ZU93 Cluster: Hypothetical protein; n=1; Microscilla marina ATCC 23134|Rep: Hypothetical protein - Microscilla marina ATCC 23134 HSP 1 e-value: 3.0E-14 bit: 59.3 Len: 261 Query Start:448 Query End:708 Subject Strand: null Subject Start: 29 Subject End: 118 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y T G K * K D H R V F * H V N T S V X X X X X X X X X X X X X E I S - - - L N Y L R I R E I H N A G L K V I H I I D R Y K M T H K I A H E V E G A L I * A Y P G F S N I Q S G A G .............................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y I G K G K G N R V F D H A R A A Q A L E A E D D P K D D D D E N K K P D L K L S R I R A V R N A G L E V I H V I H R H G M D D S T A C E V E A C L I D A I P G L T N I M G G T G .............................................................................................................................. HSP 2 e-value: 3.0E-14 bit: 42.7 Len: 90 Query Start:368 Query End:457 Subject Strand: null Subject Start: 2 Subject End: 31 ............................................................................................................................................................................................................................................................................................................................................................................... I E S F S P E M C K E L E F Y V Y R L I D P R N G * T F I L ......................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................... M N K F S P E V I D K L N Y Y V Y R L I D P R N G E T F Y I ......................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8X7L0 Cluster: Hypothetical protein; n=1; Escherichia coli O157:H7|Rep: Hypothetical protein - Escherichia coli O157:H7 HSP 1 e-value: 2.0E-13 bit: 67.0 Len: 261 Query Start:448 Query End:708 Subject Strand: null Subject Start: 30 Subject End: 111 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y T G K * K D H R V F * H V N T S V X X X X X X X X X X X X X E I S L N Y L R I R E I H N A G L K V I H I I D R Y K M T - H K I A H E V E G A L I * A Y P G F S N I Q S G A G .............................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y V G K G K G N R V F A H M R G E V A A A D D D D L - - - - - - L S N K L K Q I R E I R L A G L E V I H V I H R H G M T D E K T A Y E V E A A L I D A Y P G L T N I M N G A G .............................................................................................................................. HSP 2 e-value: 2.0E-13 bit: 32.3 Len: 84 Query Start:368 Query End:451 Subject Strand: null Subject Start: 3 Subject End: 30 ............................................................................................................................................................................................................................................................................................................................................................................... I E S F S P E M C K E L E F Y V Y R L I D P R N G * T F ............................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................... I T E F P S G V I E H L G W Y V Y R L I D P R D G S T F ............................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q57I58 Cluster: Hypothetical protein; n=4; Enterobacteriaceae|Rep: Hypothetical protein - Salmonella choleraesuis HSP 1 e-value: 2.0E-13 bit: 63.2 Len: 261 Query Start:448 Query End:708 Subject Strand: null Subject Start: 30 Subject End: 111 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y T G K * K D H R V F * H V N T S V X X X X X X X X X X X X X E I S L N Y L R - I R E I H N A G L K V I H I I D R Y K M T - H K I A H E V E G A L I * A Y P G F S N I Q S G A G .............................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y V G K G K G N R V F A H M R G E V A A V D D D - - - - - - - E L L S N K L K Q L R E I R L A G L E V I H V I H R H G I A D E K T A Y E V E A A L I D A Y P G L T N I M N G A G .............................................................................................................................. HSP 2 e-value: 2.0E-13 bit: 35.8 Len: 84 Query Start:368 Query End:451 Subject Strand: null Subject Start: 3 Subject End: 30 ............................................................................................................................................................................................................................................................................................................................................................................... I E S F S P E M C K E L E F Y V Y R L I D P R N G * T F ............................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................... I N E F P P G V I E H L G W Y V Y R L I D P R D G S T F ............................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0P1X8 Cluster: Hypothetical protein; n=1; Stappia aggregata IAM 12614|Rep: Hypothetical protein - Stappia aggregata IAM 12614 HSP 1 e-value: 4.0E-13 bit: 58.9 Len: 255 Query Start:448 Query End:702 Subject Strand: null Subject Start: 28 Subject End: 107 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y T G K * K D H R V F * H V N T S V X X X X X X X X X X X X X E I S L N Y L R I R E I H N A G L K V I H I I D R Y K M T H K I A H E V E G A L I * A Y P G F S N I Q S G .................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y V G K G R N N R V F D H A - - - - - A G R P G M S S E S N E T L G A K L D R I R A I Q N A G L D V I H V I H R H E I P N D A V F E V E A A L I D A Y P G L T N V Q G G .................................................................................................................................... HSP 2 e-value: 4.0E-13 bit: 39.3 Len: 75 Query Start:377 Query End:451 Subject Strand: null Subject Start: 4 Subject End: 28 ........................................................................................................................................................................................................................................................................................................................................................................................ F S P E M C K E L E F Y V Y R L I D P R N G * T F ............................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................ F T E E V C E K L G N Y V Y R L I D P R N G E T F ............................................................................................................................................................................................................................................................................................................................................................................................... attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 547 End: 666 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S L N Y L R I R E I H N A G L K V I H I I D R Y K M T H K I A H E V E G A L I ........................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 660 End: 809 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N L G L S R I F K Y S K W G G N N E Y S V I N A S H L E I K Y Y N D A A R D K L T T F S A I N Q I ......................... Protein_Len: 31 Strand: - Start: 688 End: 780 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I N L T P R S Y H I Y H L L H K E D Q F L T N Y H H Q A R Y M ...................................................... Protein_Len: 39 Strand: - Start: 611 End: 727 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Q G N Y F S V Y S Q E H L Q P H M L K P K D L I K L Y E F H P P F L S Y L T M ........................................................................................................... Protein_Len: 47 Strand: - Start: 445 End: 585 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ V K I S T F S L I V T N K L M Y V G R N L I I F F N I I V L P F I F N G E V I Q S N S F N M M ......................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 306 End: 434 ................................................................................................................................................................................................................................................................................................................. C Y L S P H M Y W L L S S F L I R Y F F F L F N K V Q F T Y L I L T K H K D N L Q D M ................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 202 End: 333 ......................................................................................................................................................................................................... Q D C H I K V L R F S F P S K S Y V H K N C Y Y F A S F K C L Y I A L L V L Q S A H V M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 68 End: 202 ................................................................... F S L I F G H P N Y C K L T I F I S Y I D V F N N F L L L F Q M I Q N I Y L T Y E Y I I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -6.2 Tail_Score: -4.10188 Start: 199 End: 214 Full_Region: ccgactagtaaagat tcattg tgat caatga ttatttatgaatata ......................................................................................................................................................................................................tcattgtgatcaatga............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: AA02006:AA02007|AA02006:AA02007:PEP--fructosephosphotransferase system repressor, DeoR family:hypothetical protein:->->:1365054..1365887 834 attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Intra-Species Hit: Count: 1 Min: 1 Max: 834 Len: 834 Subject: aact_AA02006_AA02007|PEP--fructosephosphotransferase system repressor, DeoR family:hypothetical protein|POSITIVE:POSITIVE|[1365054,1365887]|834 HSP 1 e-value: 0.0 bit: 722.0 Len: 364 Query Start:1 Query End:364 Subject Strand: POSITIVE Subject Start: 1 Subject End: 364 attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... attaactccttaaaatgtcagaaatagatagttgattgattccgaattaactaaatattggttgttaaaatgagagtataaatccatgcggattataacactttagtgtgataaaaattgaataaatgtccacaaaattattaaataatagaagaaattgcataatttgatttatgtacaatgtatattcataaataatcattgatcacaatgaatctttactagtcggaaagaaaatgggcttttagaatagacatgcttgttacaatagtaaaaggcagaaaatttacagaggtaaatagctagcagtacaagctgggatgcatgtaccataaaagtgaactaaagagaattctataaaaaa...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-65 bit: 250.0 Len: 126 Query Start:709 Query End:834 Subject Strand: POSITIVE Subject Start: 709 Subject End: 834 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataatgaatatagtgtaataaatgcttctcatcttgaaataaagtattataatgatgctgcgcgcgataaattaaccactttcagcgcgataaatcaaatttaattttatttcacatagtaaaata Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUAACUCCUUAAAAUGUCAGAAAUAGAUAGUUGAUUGAUUCCGAAUUAACUAAAUAUUGGUUGUUAAAAUGAGAGUAUAAAUCCAUGCGGAUUAUAACACUUUAGUGUGAUAAAAAUUGAAUAAAUGUCCACAAAAUUAUUAAAUAAUAGAAGAAAUUGCAUAAUUUGAUUUAUGUACAAUGUAUAUUCAUAAAUAAUCAUUGAUCACAAUGAAUCUUUACUAGUCGGAAAGAAAAUGGGCUUUUAGAAUAGACAUGCUUGUUACAAUAGUAAAAGGCAGAAAAUUUACAGAGGUAAAUAGCUAGCAGUACAAGCUGGGAUGCAUGUACCAUAAAAGUGAACUAAAGAGAAUUCUAUAAAAAAAGAAUAGAAAGUUUUUCACCUGAAAUGUGUAAAGAAUUAGAGUUUUAUGUUUAUCGUUUAAUUGAUCCAAGAAAUGGUUAAACUUUUAUACUGGUAAAUGAAAGGAUCACCGUGUUUUUUAACAUGUAAACACCUCUGUUUAGUAUGAUAAAAAAAUUGAUGAUUACUAGGGGAAAGAUGAAAUUUCCCUCAACUAUUUGAGAAUUAGAGAAAUUCAUAAUGCAGGUUUAAAGGUUAUUCAUAUUAUUGACCGUUAUAAAAUGACACAUAAGAUUGCUCAUGAAGUUGAGGGUGCAUUAAUUUAGGCUUAUCCAGGAUUUUCAAAUAUUCAAAGUGGGGCGGGAAUAAUGAAUAUAGUGUAAUAAAUGCUUCUCAUCUUGAAAUAAAGUAUUAUAAUGAUGCUGCGCGCGAUAAAUUAACCACUUUCAGCGCGAUAAAUCAAAUUUAAUUUUAUUUCACAUAGUAAAAUA .....(((((.....(..(((.((((..(((((((((.......)))))))))..))))..........((((((((.(((..((((..((((((..........(((.((((.............)))))))......((((((..(((((......(((((((......)))))))...........((((((...((((((....)))))).(((((((...((((...........(((((((...(((...(((((.((((....)))).)))))....((((((....))))))..)))...(((((.((......)).)))))..)))))))........(((((((((((.........))))))...)))))..)))).....)))))))........)))))))))))..)))))))))))).....))))))).)))))))).)))..)........(((((.((..(((((((.((((((((((....)))))).)))).)))))))..)).)))))...))))).(((((((.....(((((((((......(((((.....))))).....((((.((((..(((((..........)))))(((((...)))))...)))).))))......))))))))).(((((...(((.((((((.((..(((..(...(((.....)))....)..)))..)).))).))).)))..)))))...)))))))((((((((((.......((((....(((((((..............)).)))))....))))......))))))))))............. (-169.78) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUUUUACUAUGUGAAAUAAAAUUAAAUUUGAUUUAUCGCGCUGAAAGUGGUUAAUUUAUCGCGCGCAGCAUCAUUAUAAUACUUUAUUUCAAGAUGAGAAGCAUUUAUUACACUAUAUUCAUUAUUCCCGCCCCACUUUGAAUAUUUGAAAAUCCUGGAUAAGCCUAAAUUAAUGCACCCUCAACUUCAUGAGCAAUCUUAUGUGUCAUUUUAUAACGGUCAAUAAUAUGAAUAACCUUUAAACCUGCAUUAUGAAUUUCUCUAAUUCUCAAAUAGUUGAGGGAAAUUUCAUCUUUCCCCUAGUAAUCAUCAAUUUUUUUAUCAUACUAAACAGAGGUGUUUACAUGUUAAAAAACACGGUGAUCCUUUCAUUUACCAGUAUAAAAGUUUAACCAUUUCUUGGAUCAAUUAAACGAUAAACAUAAAACUCUAAUUCUUUACACAUUUCAGGUGAAAAACUUUCUAUUCUUUUUUUAUAGAAUUCUCUUUAGUUCACUUUUAUGGUACAUGCAUCCCAGCUUGUACUGCUAGCUAUUUACCUCUGUAAAUUUUCUGCCUUUUACUAUUGUAACAAGCAUGUCUAUUCUAAAAGCCCAUUUUCUUUCCGACUAGUAAAGAUUCAUUGUGAUCAAUGAUUAUUUAUGAAUAUACAUUGUACAUAAAUCAAAUUAUGCAAUUUCUUCUAUUAUUUAAUAAUUUUGUGGACAUUUAUUCAAUUUUUAUCACACUAAAGUGUUAUAAUCCGCAUGGAUUUAUACUCUCAUUUUAACAACCAAUAUUUAGUUAAUUCGGAAUCAAUCAACUAUCUAUUUCUGACAUUUUAAGGAGUUAAU .......(((((((.....((((((....)))))).....((((...(((((......)))))...))))...((((((((((((((....(((((((((.(((((.(((.((..(((((((.................))))))).))........((.....))..))).))))).((((((((((((((((((...(((.((.((((.((((........)))).))))...))...)))...))).))))))...................)))))))))...))))))))).....(((((...................))))).....((((((((((((((((((......(((((.........))))).((((((..(((((((((.....))).....))))))......((((((........(((((((.......(((((((.........(((((........))))).........)))))))..((((.((((((.....((((.(.....).))))..((((....(((((..........)))))....))))...))))))))))...........................))))))).((((((....))))))...))))))........))))))..............................)))))))....)))))))))))..................)))))))))))))).)))))))......(((((....(((((............))))).((((((................))))))........))))).... (-149.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 629 809 761 190 141 aact:AA01842|5end_conserved_hypothetical_protein_1238271..1238501_POSITIVE 336 709 665 120 74 aact:AA01325|5end_formamidopyrimidine-DNA_glycosylase_894747..894977_POSITIVE 292 797 764 186 143 aact:AA01843|5end_sensor_protein;_probable_two-component_system_sensor_histidine_kinase_1238377..1238607_POSITIVE 292 797 761 227 179 aact:AA01767|5end_conserved_hypothetical_protein_1192528..1192758_POSITIVE 284 799 761 134 92 aact:AA01336|5end_hypothetical_protein_904056..904286_POSITIVE 282 810 764 191 138 aact:AA00117|5end_hypothetical_protein_88246..88476_POSITIVE 281 663 631 193 152 aact:AA02099|5end_50S_ribosomal_protein_L25_1429639..1429869_POSITIVE 279 797 763 59 30 aact:AA01423|5end_cell_division_protein_X,_ABC_system_permease_956668..956898_POSITIVE 272 806 767 57 16 aact:AA02526|5end_conserved_hypothetical_protein_1755225..1755455_POSITIVE 270 800 764 189 154 aact:AA02731|5end_outer_membrane_lipoprotein_carrier_precursor_1911498..1911728_POSITIVE 270 686 642 190 143 aact:AA00839|5end_UDP-MurNAc-pentapeptide_phosphotransferase_578853..579083_POSITIVE 270 801 769 63 32 aact:AA00804|5end_fumarate_reductase_flavoprotein_subunit_A_549770..550000_POSITIVE 266 708 664 185 146 aact:AA00514|5end_hypothetical_protein_355609..355839_POSITIVE 265 799 752 200 157 aact:AA00091|5end_short-patch_reverse_transcription_protein_67741..67971_POSITIVE 264 804 764 199 158 aact:AA02873|5end_conserved_hypothetical_protein_2016165..2016395_POSITIVE 262 798 764 43 12 aact:AA02673|5end_gluconate_utilization_operon_repressor_1858913..1859143_POSITIVE 261 740 692 153 105 aact:AA02109|5end_2-acylglycerophosphoethanolamine_acyltransferase;_acyl-acyl_carrier_protein_synthetase_1436563..1436793_POSITIVE 261 800 754 72 22 aact:AA01891|5end_pyridoxine_kinase_1275922..1276152_POSITIVE 258 796 763 180 142 aact:AA02208|5end_tryptophan_synthase,__alpha_subunit_1503113..1503343_POSITIVE 258 346 305 99 41 aact:AA01654|5end_periplasmic_maltose-binding_protein_precursor_1119896..1120126_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 294 709 669 35 2 aact:AA01324|3end_50S_ribosomal_protein_L33_894742..894892_POSITIVE 284 799 761 107 65 aact:AA01335|3end_primosomal_protein_N'_904109..904259_POSITIVE 282 810 764 72 19 aact:AA00116|3end_conserved_hypothetical_protein_88207..88357_POSITIVE 279 797 763 47 18 aact:AA01422|3end_cell_division_protein_E,_ABC_system_ATP-binding_protein_956736..956886_POSITIVE 273 557 521 110 63 aact:AA00981|3end_carboxylesterase_686377..686527_POSITIVE 272 806 767 54 13 aact:AA02525|3end_conserved_hypothetical_protein_1755302..1755452_POSITIVE 265 331 291 66 22 aact:AA02714|3end_paraquat-inducible_protein_PqiA_homolog_1897167..1897317_POSITIVE 265 799 752 128 85 aact:AA00089|3end_S-adenosylmethionine_synthase;_methionine_adenosyltransferase_67749..67899_POSITIVE 264 804 764 136 95 aact:AA02872|3end_conserved_hypothetical_protein_2016182..2016332_POSITIVE 258 346 305 127 69 aact:AA01651|3end_hypothetical_protein_1120004..1120154_POSITIVE 256 320 271 134 70 aact:AA00266|3end_conserved_hypothetical_protein_(probable_metabolite_transport_protein)_187946..188096_POSITIVE 256 797 760 57 15 aact:AA00050|3end_cytochrome_c-type_biogenesis_protein_precursor_(reductase)_40919..41069_POSITIVE 252 736 695 71 37 aact:AA01463|3end_probable_transport_protein_984200..984350_POSITIVE 252 708 675 141 107 aact:AA01421|3end_phosphoglycolate_phosphatase_955806..955956_POSITIVE 249 340 294 69 1 aact:AA02678|3end_formate_dehydrogenase,_gamma_subunit_1865523..1865673_POSITIVE 248 707 668 67 24 aact:AA02556|3end_methylglyoxal_synthase_1781007..1781157_POSITIVE 246 480 431 48 12 aact:AA02320|3end_ABC_transporter_ATP-binding_protein_1585234..1585384_POSITIVE 246 320 279 144 106 aact:AA00643|3end_hypothetical_protein_440694..440844_POSITIVE 245 678 640 71 34 aact:AA02688|3end_hydrogenase_4_component_E_1874692..1874842_POSITIVE 243 799 755 71 25 aact:AA01830|3end_2,3-cyclic-nucleotide_2-phosphodiesterase_1233609..1233759_POSITIVE