Origin IGS:
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattatttaaagccaatggataggcgcagtacgtcattattgtatgagcgacttaaataaccaatttggttacggtaagtaatagcagaattagtatgataatatacaattttagctaagaaagatttatactttacactaatcctatgtctaataaagtccatctttgattttgaaatgaacagggaaatcgtatttttttataaatttcttttttctatagcgctgttttatctgaataaattctgtattgtgtattttattcagtgagtagactaagtcaattttaaaataaattttaattatttgttaaatttgtgaactagatcacatttataatgggaattaaaatgtgaaataaaagtctaacctaaaaccttgttttaaaattatacacggaggattga
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tcaatcctccgtgtataattttaaaacaaggttttaggttagacttttatttcacattttaattcccattataaatgtgatctagttcacaaatttaacaaataattaaaatttattttaaaattgacttagtctactcactgaataaaatacacaatacagaatttattcagataaaacagcgctatagaaaaaagaaatttataaaaaaatacgatttccctgttcatttcaaaatcaaagatggactttattagacataggattagtgtaaagtataaatctttcttagctaaaattgtatattatcatactaattctgctattacttaccgtaaccaaattggttatttaagtcgctcatacaataatgacgtactgcgcctatccattggctttaaataatcttcgccaaaattcatcaacggctttactacctgaaatcctacagggataggaataagataaaaatgacctttcgaaaacgtaaagagtcatttgacttgaaagaagtaagcaatgcgttaccctcttactgccagccctaatttttcagaattaaaataaatggatcttttttagaaaattttcctagaatgctttgaaaatcataaggcatagcccacctagcatttctagctaaaaaccgttcgctagtaaaaacctaaatttactagcctaagatattgaaaacctattaacaaggaagaagtataattaaaagaaaggtggtgaactaagcagaattggtcttaacagtaagcggtttactgcgtcgcatccctgcggacttctacctagtccaccattgacagatgatgccttgtagtgtgcgacataaaactcatactaaaagcgttttatatcttcagccgcttatttcaggagaacaatcctgactttcaaatatcttacttagaaagtaactgcataataaaatcgttttagcagactgtcaatcaatactgcaagatatgttgactaatttcttcatcgaaaatttattcagtgataacaacaaattactgtaattacagagtgttagccggtgtaatcggattaattttttatggtatttgtgaaaaaaatacataaaataacccgtcagattgcgcccacactaaaatcttgttaaagtgcggtgcaaatttttcacaaaaccaggaacaaccaa

Mask Tandem Repeat Region ================================================
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattatttaaagccaatggataggcgcagtacgtcattattgtatgagcgacttaaataaccaatttggttacggtaagtaatagcagaattagtatgataatatacaattttagctaagaaagatttatactttacactaatcctatgtctaataaagtccatctttgattttgaaatgaacagggaaatcgtatttttttataaatttcttttttctatagcgctgttttatctgaataaattctgtattgtgtattttattcagtgagtagactaagtcaattttaaaataaattttaattatttgttaaatttgtgaactagatcacatttataatgggaattaaaatgtgaaataaaagtctaacctaaaaccttgttttaaaattatacacggaggattga

Find is-nt database================================================
Query_seq: AA01893:AA01894|AA01893:AA01894:acetyl-coenzyme-A carboxylase subunit A:conserved hypothetical protein (possible transthyretin-like periplasmic protein):->->:1277933..1279106 1174
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattatttaaagccaatggataggcgcagtacgtcattattgtatgagcgacttaaataaccaatttggttacggtaagtaatagcagaattagtatgataatatacaattttagctaagaaagatttatactttacactaatcctatgtctaataaagtccatctttgattttgaaatgaacagggaaatcgtatttttttataaatttcttttttctatagcgctgttttatctgaataaattctgtattgtgtattttattcagtgagtagactaagtcaattttaaaataaattttaattatttgttaaatttgtgaactagatcacatttataatgggaattaaaatgtgaaataaaagtctaacctaaaaccttgttttaaaattatacacggaggattga
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: AA01893:AA01894|AA01893:AA01894:acetyl-coenzyme-A carboxylase subunit A:conserved hypothetical protein (possible transthyretin-like periplasmic protein):->->:1277933..1279106 1174
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattatttaaagccaatggataggcgcagtacgtcattattgtatgagcgacttaaataaccaatttggttacggtaagtaatagcagaattagtatgataatatacaattttagctaagaaagatttatactttacactaatcctatgtctaataaagtccatctttgattttgaaatgaacagggaaatcgtatttttttataaatttcttttttctatagcgctgttttatctgaataaattctgtattgtgtattttattcagtgagtagactaagtcaattttaaaataaattttaattatttgttaaatttgtgaactagatcacatttataatgggaattaaaatgtgaaataaaagtctaacctaaaaccttgttttaaaattatacacggaggattga
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: AA01893:AA01894|AA01893:AA01894:acetyl-coenzyme-A carboxylase subunit A:conserved hypothetical protein (possible transthyretin-like periplasmic protein):->->:1277933..1279106 1174
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattatttaaagccaatggataggcgcagtacgtcattattgtatgagcgacttaaataaccaatttggttacggtaagtaatagcagaattagtatgataatatacaattttagctaagaaagatttatactttacactaatcctatgtctaataaagtccatctttgattttgaaatgaacagggaaatcgtatttttttataaatttcttttttctatagcgctgttttatctgaataaattctgtattgtgtattttattcagtgagtagactaagtcaattttaaaataaattttaattatttgttaaatttgtgaactagatcacatttataatgggaattaaaatgtgaaataaaagtctaacctaaaaccttgttttaaaattatacacggaggattga
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 6	Min: 773	Max: 1154	Len: 382
Subject: UniRef90_UPI000039774F Cluster: hypothetical protein Haso02002117; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02002117 - Haemophilus somnus 2336
HSP  1	e-value: 6.0E-10	bit: 62.0	Len: 177	Query Start:773	Query End:949	Subject Strand: null	Subject Start: 146	Subject End: 207
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F  I  S  K  S  K  M  D  -  -  -  F  I  R  H  R  I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  Y  R  N  Q  I  G  Y  L  S  R  S  Y  N  N  D  V  L  R  L  S  I  G  F  K .................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F  I  S  N  N  K  S  R  S  G  L  Y  L  G  L  G  L  G  I  E  Y  K  S  F  L  V  D  I  G  Y  Y  H  T  H  S  K  I  T  Y  K  E  Q  G  S  Y  V  S  T  P  Y  N  N  D  A  I  R  L  T  L  G  F  K .................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-10	bit: 26.2	Len: 141	Query Start:1014	Query End:1154	Subject Strand: null	Subject Start: 78	Subject End: 124
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L  K  Q  G  F  R  L  D  F  Y  F  T  F  *  F  P  L  *  M  X  X  X  X  X  X  X  X  X  I  K  I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T ....................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L  K  E  T  Y  R  V  N  R  Y  A  S  L  P  I  Y  F  I  L  K  Q  N  Y  A  L  N  A  N  T  K  F  Y  L  K  G  D  L  G  Y  S  I  N  K  I  R  K  T ....................

Subject: UniRef90_UPI000039723B Cluster: hypothetical protein Haso02000500; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02000500 - Haemophilus somnus 2336
HSP  1	e-value: 2.0E-7	bit: 54.3	Len: 138	Query Start:773	Query End:910	Subject Strand: null	Subject Start: 201	Subject End: 247
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  Y  R  N  Q  -  I  G  Y  L  S  R  S  Y  N  N  D  V  L  R  L  S  I  G  F  K ........................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  G  I  E  Y  K  S  F  L  A  E  I  G  Y  Y  H  T  H  A  T  V  S  Y  K  N  K  N  T  Q  Y  P  Q  Y  S  Y  N  N  D  A  I  R  L  T  L  G  V  K ........................................................................................................................................................................................................................................................................
HSP  2	e-value: 2.0E-7	bit: 25.4	Len: 147	Query Start:921	Query End:1067	Subject Strand: null	Subject Start: 147	Subject End: 196
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K  I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T  E  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  Y  D  F  P  V  H  -  F  K  I  K  D  G  L  Y ...........................................................................................................
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K  F  Y  L  K  G  N  I  G  Y  S  I  N  K  M  P  N  T  K  Y  A  H  Y  S  N  E  T  S  L  K  I  Q  Q  T  Q  I  G  D  P  I  Y  K  M  K  A  K  N  G  L  Y ...........................................................................................................

Subject: UniRef90_UPI0000397324 Cluster: hypothetical protein Haso02000779; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02000779 - Haemophilus somnus 2336
HSP  1	e-value: 4.0E-7	bit: 52.0	Len: 138	Query Start:773	Query End:910	Subject Strand: null	Subject Start: 152	Subject End: 197
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  Y  R  N  Q  I  G  Y  L  S  R  S  Y  N  N  D  V  L  R  L  S  I  G  F  K ........................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  G  V  E  Y  K  S  F  L  A  D  I  G  Y  Y  H  A  H  A  K  V  N  Y  E  S  N  G  Y  Y  S  W  H  P  Y  N  N  D  A  I  R  L  T  L  G  F  K ........................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 26.6	Len: 57	Query Start:1011	Query End:1067	Subject Strand: null	Subject Start: 104	Subject End: 122
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K  I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T  E ...........................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K  F  Y  L  K  G  D  I  G  Y  S  I  N  K  I  D  N  T  K ...........................................................................................................

Subject: UniRef90_Q7VK92 Cluster: Hypothetical protein; n=1; Haemophilus ducreyi|Rep: Hypothetical protein - Haemophilus ducreyi
HSP  1	e-value: 4.0E-7	bit: 43.5	Len: 138	Query Start:773	Query End:910	Subject Strand: null	Subject Start: 104	Subject End: 164
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  Y  -  -  -  -  -  -  R  N  Q  I  G  Y  L  S  R  -  -  -  -  -  -  -  -  -  S  Y  N  N  D  V  L  R  L  S  I  G  F  K ........................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V  G  A  E  Y  K  N  F  L  A  E  I  G  Y  Y  R  T  H  A  N  I  V  Y  S  G  T  G  K  F  K  Y  P  I  D  Y  I  N  T  H  K  H  T  I  N  G  K  S  S  Y  N  N  D  A  I  R  L  S  V  G  F  K ........................................................................................................................................................................................................................................................................
HSP  2	e-value: 4.0E-7	bit: 35.0	Len: 144	Query Start:921	Query End:1064	Subject Strand: null	Subject Start: 52	Subject End: 99
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T  E  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  X  Y  D  F  P  V  H  F  K  I  K  D  G  L  Y ..............................................................................................................
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L  Y  V  K  G  D  L  G  Y  S  F  N  K  I  K  N  T  H  Y  S  L  D  T  K  F  T  N  N  A  G  I  P  E  L  T  S  F  P  V  E  I  K  A  K  N  G  L  Y ..............................................................................................................

Subject: UniRef90_UPI000045D5AD Cluster: hypothetical protein Haso02000106; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02000106 - Haemophilus somnus 2336
HSP  1	e-value: 7.0E-7	bit: 49.7	Len: 138	Query Start:773	Query End:910	Subject Strand: null	Subject Start: 158	Subject End: 209
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  -  -  -  -  -  -  -  Y  R  N  Q  I  G  Y  L  S  R  S  Y  N  N  D  V  L  R  L  S  I  G  F  K ........................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L  G  I  E  Y  K  A  F  L  A  E  I  G  Y  Y  H  T  K  S  K  V  T  R  K  N  Y  N  Y  E  I  R  N  S  I  -  Y  E  S  T  S  Y  N  N  D  A  I  R  L  T  L  G  V  K ........................................................................................................................................................................................................................................................................
HSP  2	e-value: 7.0E-7	bit: 28.1	Len: 54	Query Start:1011	Query End:1064	Subject Strand: null	Subject Start: 104	Subject End: 121
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T  E ..............................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L  Y  F  K  A  N  L  G  Y  S  I  N  K  I  S  N  T  Q ..............................................................................................................

Subject: UniRef90_UPI000039723C Cluster: COG0642: Signal transduction histidine kinase; n=1; Haemophilus somnus 2336|Rep: COG0642: Signal transduction histidine kinase - Haemophilus somnus 2336
HSP  1	e-value: 1.0E-6	bit: 52.8	Len: 138	Query Start:773	Query End:910	Subject Strand: null	Subject Start: 195	Subject End: 247
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  S  V  K  Y  K  S  F  L  A  K  I  V  Y  Y  H  T  N  S  A  I  T  Y  R  N  Q  -  -  -  -  -  -  I  G  Y  L  S  -  R  S  Y  N  N  D  V  L  R  L  S  I  G  F  K ........................................................................................................................................................................................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I  G  L  E  Y  K  S  F  L  A  E  I  G  Y  Y  H  T  H  A  A  V  N  Y  K  T  K  P  Y  K  S  K  A  E  G  Y  Y  A  W  H  S  Y  N  N  D  A  I  R  L  T  L  G  F  K ........................................................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-6	bit: 24.3	Len: 57	Query Start:1011	Query End:1067	Subject Strand: null	Subject Start: 144	Subject End: 162
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K  I  Y  F  K  I  D  L  V  Y  S  L  N  K  I  H  N  T  E ...........................................................................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K  F  Y  L  K  G  D  I  G  Y  S  I  N  K  I  A  D  T  K ...........................................................................................................


ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattatacacggaggattga
Predict ORF larger than 30AA ================================================
Protein_Len: 50	Strand: +	Start: 67	End: 216
.................................................................. M  T  G  Y  F  M  Y  F  F  H  K  Y  H  K  K  L  I  R  L  H  R  L  T  L  C  N  Y  S  N  L  L  L  S  L  N  K  F  S  M  K  K  L  V  N  I  S  C  S  I  D ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 54	Strand: +	Start: 626	End: 787
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M  R  A  G  S  K  R  V  T  H  C  L  L  L  S  S  Q  M  T  L  Y  V  F  E  R  S  F  L  S  Y  S  Y  P  C  R  I  S  G  S  K  A  V  D  E  F  W  R  R  L  F  K  A  N  G ...................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 37	Strand: +	Start: 714	End: 824
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M  P  I  P  V  G  F  Q  V  V  K  P  L  M  N  F  G  E  D  Y  L  K  P  M  D  R  R  S  T  S  L  L  Y  E  R  L  K ..............................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 53	Strand: +	Start: 876	End: 1034
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M  L  A  K  K  D  L  Y  F  T  L  I  L  C  L  I  K  S  I  F  D  F  E  M  N  R  E  I  V  F  F  Y  K  F  L  F  S  I  A  L  F  Y  L  N  K  F  C  I  V  Y  F  I  Q ............................................................................................................................................
Protein_Len: 51	Strand: -	Start: 921	End: 1073
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y  L  G  D  K  I  K  F  H  V  P  F  D  Y  K  K  I  F  K  K  K  R  Y  R  Q  K  I  Q  I  F  E  T  N  H  I  K  N  L  S  Y  V  L  D  I  K  F  Y  I  K  I  M .....................................................................................................
Protein_Len: 60	Strand: -	Start: 773	End: 958
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G  I  S  L  R  L  V  D  N  N  Y  S  R  S  L  Y  G  I  Q  N  R  Y  T  I  A  S  N  T  H  Y  Y  V  I  K  A  L  F  S  K  Y  K  V  S  I  R  H  R  I  F  D  M  K  S  K  S  I  F  L  S  M ........................................................................................................................................................................................................................
Protein_Len: 48	Strand: -	Start: 630	End: 773
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P  Q  C  Y  S  P  L  A  N  S  V  E  K  L  D  F  S  E  K  R  K  R  F  T  M  K  I  K  N  R  D  R  Y  S  K  L  Y  Y  L  R  Q  H  I  K  A  F  I  M .................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 39	Strand: -	Start: 230	End: 346
..................................................................................................................................................................................................................................... F  S  K  I  I  C  N  S  E  L  Y  S  I  Q  F  D  P  N  N  E  Q  F  L  R  S  F  I  Y  F  A  K  L  I  L  K  I  D  C  M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 34	Strand: -	Start: 147	End: 248
.................................................................................................................................................. L  L  K  N  N  D  S  F  L  N  E  I  F  F  N  T  L  M  D  Q  L  I  S  Q  C  D  A  L  V  I  K  N  H  M ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 36	Strand: -	Start: 83	End: 190
.................................................................................. T  N  K  E  C  I  G  Y  F  I  L  G  I  V  G  A  L  V  R  Y  N  C  Y  N  T  T  I  V  S  Y  I  K  S  S  S  M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattatacacggaggattga
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 87	Start: 215	End: 244
......................................................................................................................................................................................................................ATTGACAGTCTGCTAAAACGATTTTATTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattatacacggaggattga
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 47	HP_score: -2.1	Tail_Score: -3.66883	Start: 275	End: 294	Full_Region: tcttcagccgcttat ttcagga gaacaa tcctgac tttcaaatatcttac
..................................................................................................................................................................................................................................................................................ttcaggagaacaatcctgac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 53	HP_score: -5.6	Tail_Score: -2.79648	Start: 276	End: 293	Full_Region: cttcagccgcttatt tcagga gaacaa tcctga ctttcaaatatctta
...................................................................................................................................................................................................................................................................................tcaggagaacaatcctga.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 70	HP_score: -7.2	Tail_Score: -3.67296	Start: 825	End: 839	Full_Region: tgctattacttaccg taacca aat tggtta tttaagtcgctcata
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaccaaattggtta...............................................................................................................................................................................................................................................................................................................................................

Find igs database================================================
Query_seq: AA01893:AA01894|AA01893:AA01894:acetyl-coenzyme-A carboxylase subunit A:conserved hypothetical protein (possible transthyretin-like periplasmic protein):->->:1277933..1279106 1174
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattatacacggaggattga
Intra-Species Hit: Count: 1	Min: 1	Max: 772	Len: 772
Subject: aact_AA01893_AA01894|acetyl-coenzyme-A carboxylase subunit A:conserved hypothetical protein (possible transthyretin-like periplasmic protein)|POSITIVE:POSITIVE|[1277933,1279106]|1174
HSP  1	e-value: 0.0	bit: 1489.0	Len: 772	Query Start:1	Query End:772	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 772
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtannnnnnncacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagatta..................................................................................................................................................................................................................................................................................................................................................................................................................
ttggttgttcctggttttgtgaaaaatttgcaccgcactttaacaagattttagtgtgggcgcaatctgacgggttattttatgtatttttttcacaaataccataaaaaattaatccgattacaccggctaacactctgtaattacagtaatttgttgttatcactgaataaattttcgatgaagaaattagtcaacatatcttgcagtattgattgacagtctgctaaaacgattttattatgcagttactttctaagtaagatatttgaaagtcaggattgttctcctgaaataagcggctgaagatataaaacgcttttagtatgagttttatgtcgcacactacaaggcatcatctgtcaatggtggactaggtagaagtccgcagggatgcgacgcagtaaaccgcttactgttaagaccaattctgcttagttcaccacctttcttttaattatacttcttccttgttaataggttttcaatatcttaggctagtaaatttaggtttttactagcgaacggtttttagctagaaatgctaggtgggctatgccttatgattttcaaagcattctaggaaaattttctaaaaaagatccatttattttaattctgaaaaattagggctggcagtaagagggtaacgcattgcttacttctttcaagtcaaatgactctttacgttttcgaaaggtcatttttatcttattcctatccctgtaggatttcaggtagtaaagccgttgatgaattttggcgaagatta..................................................................................................................................................................................................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UUGGUUGUUCCUGGUUUUGUGAAAAAUUUGCACCGCACUUUAACAAGAUUUUAGUGUGGGCGCAAUCUGACGGGUUAUUUUAUGUAUUUUUUUCACAAAUACCAUAAAAAAUUAAUCCGAUUACACCGGCUAACACUCUGUAAUUACAGUAAUUUGUUGUUAUCACUGAAUAAAUUUUCGAUGAAGAAAUUAGUCAACAUAUCUUGCAGUAUUGAUUGACAGUCUGCUAAAACGAUUUUAUUAUGCAGUUACUUUCUAAGUAAGAUAUUUGAAAGUCAGGAUUGUUCUCCUGAAAUAAGCGGCUGAAGAUAUAAAACGCUUUUAGUAUGAGUUUUAUGUCGCACACUACAAGGCAUCAUCUGUCAAUGGUGGACUAGGUAGAAGUCCGCAGGGAUGCGACGCAGUAAACCGCUUACUGUUAAGACCAAUUCUGCUUAGUUCACCACCUUUCUUUUAAUUAUACUUCUUCCUUGUUAAUAGGUUUUCAAUAUCUUAGGCUAGUAAAUUUAGGUUUUUACUAGCGAACGGUUUUUAGCUAGAAAUGCUAGGUGGGCUAUGCCUUAUGAUUUUCAAAGCAUUCUAGGAAAAUUUUCUAAAAAAGAUCCAUUUAUUUUAAUUCUGAAAAAUUAGGGCUGGCAGUAAGAGGGUAACGCAUUGCUUACUUCUUUCAAGUCAAAUGACUCUUUACGUUUUCGAAAGGUCAUUUUUAUCUUAUUCCUAUCCCUGUAGGAUUUCAGGUAGUAAAGCCGUUGAUGAAUUUUGGCGAAGAUUA
(..((((((.(((((...((((.....((((.(((((((..((.....))..)))))))..)))).....(((((((((((((((((((.......))))).)))))))...))))))).)))))))))..))))....(((((.((((....)))).))))).))..)...((((((((.....((((((.((((((.......((((.((((.....))))))))...............((((.((((((((((...(((((((((.((((.((((((......))))))((((((.((..((((.(((((...(((((((((.((.(........).)).)))).)))))............((((((((((((((((((((((((....))))..(((((((.....)))))))...)))...)))))))))))))))))............))))))))).)))))))).......))))))))))))).(((((((((........)))))))))........((((((.......))))))...((((.((((((...((((((........(((((.....)))))...(((((......))))).....))))))..))))))))))....)))))))))))))).(((((((.(((..(((..(((((((.((((.((....)))))))))))))....)))..((((((....))))))....))).))).)))).)))))).))))))..)))))))). (-203.10)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAUCUUCGCCAAAAUUCAUCAACGGCUUUACUACCUGAAAUCCUACAGGGAUAGGAAUAAGAUAAAAAUGACCUUUCGAAAACGUAAAGAGUCAUUUGACUUGAAAGAAGUAAGCAAUGCGUUACCCUCUUACUGCCAGCCCUAAUUUUUCAGAAUUAAAAUAAAUGGAUCUUUUUUAGAAAAUUUUCCUAGAAUGCUUUGAAAAUCAUAAGGCAUAGCCCACCUAGCAUUUCUAGCUAAAAACCGUUCGCUAGUAAAAACCUAAAUUUACUAGCCUAAGAUAUUGAAAACCUAUUAACAAGGAAGAAGUAUAAUUAAAAGAAAGGUGGUGAACUAAGCAGAAUUGGUCUUAACAGUAAGCGGUUUACUGCGUCGCAUCCCUGCGGACUUCUACCUAGUCCACCAUUGACAGAUGAUGCCUUGUAGUGUGCGACAUAAAACUCAUACUAAAAGCGUUUUAUAUCUUCAGCCGCUUAUUUCAGGAGAACAAUCCUGACUUUCAAAUAUCUUACUUAGAAAGUAACUGCAUAAUAAAAUCGUUUUAGCAGACUGUCAAUCAAUACUGCAAGAUAUGUUGACUAAUUUCUUCAUCGAAAAUUUAUUCAGUGAUAACAACAAAUUACUGUAAUUACAGAGUGUUAGCCGGUGUAAUCGGAUUAAUUUUUUAUGGUAUUUGUGAAAAAAAUACAUAAAAUAACCCGUCAGAUUGCGCCCACACUAAAAUCUUGUUAAAGUGCGGUGCAAAUUUUUCACAAAACCAGGAACAACCAA
.........((..(((((..((.(((((.((((.((((........)))).....(((((((....(((((((((((((....)).)))).)))))))...(((((((((((.((((((..(((......((((..((.........(((((((.(((......(((((.(((.....)))...(((..((((((((((.((.....))...(((...))).....)))).))))))..)))..))))).(((((((((........)))))))))....))).)))))))(((.......))).....................))..)))).....((((.((((((......((((((((((((((((((..(((((.(((((((((.......)))))......).)))..)))))..)))))))...((.(((((((.(.........).))))))).))...)))))))))))((((((......))))))...................((.(((..((((.(((..........)))))))))).)).)))))).))))..)))..)))).)).)))))))..))))...))))))).(((((.(((.........))).)))))..))))..))))).)).....))))).........((((.(((((((((((................(....).((((((((((..(((.......)))..))).))))))).)))))))))))))))))......... (-176.90)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
377	549	503	72	17	aact:AA00221|5end_NADP-specific_glutamate_dehydrogenase_152436..152666_POSITIVE
362	73	31	185	137	aact:AA00974|5end_glucosamine-fructose-6-phosphate_679215..679445_POSITIVE
341	398	351	100	55	aact:AA01684|5end_ABC_transporter,_ATP-binding_protein;_possible_ATP-binding_component_of_sulfate_permease_A_protein_1136302..1136532_POSITIVE
340	767	725	70	33	aact:AA02799|5end_hypothetical_protein_1965910..1966140_POSITIVE
338	398	352	133	95	aact:AA02747|5end_ribose-phosphate_pyrophosphokinase;_phosphoribosylpyrophosphate_synthase_1924324..1924554_POSITIVE
336	768	725	215	164	aact:AA01181|5end_conserved_hypothetical_protein_808774..809004_POSITIVE
334	429	384	222	165	aact:AA01815|5end_probable_sodium-dependent_transmembrane_transport_protein_1222541..1222771_POSITIVE
334	409	363	109	60	aact:AA00425|5end_N-terminal_region_of_competence_protein_M_287295..287525_POSITIVE
333	400	352	87	41	aact:AA02226|5end_ABC_transporter_ATP-binding_protein_1514502..1514732_POSITIVE
333	404	363	217	171	aact:AA01064|5end_conserved_hypothetical_protein_(possible_aminomethyltransferase)_737428..737658_POSITIVE
331	74	31	183	140	aact:AA02146|5end_iron(III)_ABC_transporter,_ATP-binding_protein_1468828..1469058_POSITIVE
328	72	31	212	167	aact:AA02144|5end_iron_(III)_ABC_transporter,_permease_protein_1467583..1467813_POSITIVE
328	72	31	62	17	aact:AA02143|5end_hypothetical_protein_1467433..1467663_POSITIVE
328	398	353	183	138	aact:AA01878|5end_hydroxyacylglutathione_hydrolase_1264831..1265061_POSITIVE
328	770	725	104	51	aact:AA00660|5end_hypothetical_protein_453031..453261_POSITIVE
326	420	371	62	8	aact:AA02904|5end_50S_ribosomal_protein_L31_2032290..2032520_POSITIVE
324	398	353	225	167	aact:AA02990|5end_beta_hexosaminadase_2089473..2089703_POSITIVE
322	393	352	210	158	aact:AA02745|5end_isopentenyl_monophosphate_kinase_1923279..1923509_POSITIVE
322	405	368	225	182	aact:AA01551|5end_hypothetical_protein_1038190..1038420_POSITIVE
322	405	368	71	28	aact:AA01550|5end_hypothetical_protein_1038036..1038266_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
362	73	31	127	79	aact:AA00973|3end_transcriptional_regulator,_DeoR_family_679237..679387_POSITIVE
340	767	725	113	76	aact:AA02798|3end_hypothetical_protein_1966033..1966183_POSITIVE
334	409	363	137	88	aact:AA00424|3end_hypothetical_protein_287403..287553_POSITIVE
333	400	352	97	51	aact:AA02225|3end_ABC_transporter_ATP-binding_protein_1514592..1514742_POSITIVE
328	72	31	81	36	aact:AA02142|3end_outer_membrane_protein_OprM_precursor_1467532..1467682_POSITIVE
324	420	373	49	1	aact:AA02903|3end_conserved_hypothetical_protein_(ribosomal_protein_L36)_2032357..2032507_POSITIVE
322	581	548	125	99	aact:AA01393|3end_ABC_transporter,_ATP-binding_protein_942029..942179_POSITIVE
319	560	519	118	70	aact:AA01196|3end_1-acyl-sn-glycerol-3-phosphate_acetyltransferase_820955..821105_POSITIVE
317	410	364	63	12	aact:AA01987|3end_hypothetical_protein_1350620..1350770_POSITIVE
316	403	367	62	26	aact:AA02844|3end_Holliday_junction_DNA_helicase_1997885..1998035_POSITIVE
313	410	361	61	7	aact:AA00076|3end_dihydroneopterin_aldolase_56083..56233_POSITIVE
311	69	21	105	70	aact:AA01464|3end_hypothetical_protein_984403..984553_POSITIVE
309	409	361	110	55	aact:AA02415|3end_hypothetical_protein_1658726..1658876_POSITIVE
303	400	351	133	73	aact:AA01790|3end_riboflavin_bifunctional_biosynthesis_protein_1208135..1208285_POSITIVE
299	414	371	78	30	aact:AA02187|3end_hypothetical_protein_1492847..1492997_POSITIVE
298	62	23	74	33	aact:AA02978|3end_sufI_protein_precursor_homolog_2083308..2083458_POSITIVE
298	60	11	148	82	aact:AA02708|3end_probable_glyoxalase_II_family_protein_1890641..1890791_POSITIVE
298	400	352	47	6	aact:AA01264|3end_conserved_hypothetical_protein_862056..862206_POSITIVE
295	72	32	47	1	aact:AA01245|3end_tyrosine-specific_transport_protein_2_849681..849831_POSITIVE
295	62	21	148	115	aact:AA00248|3end_hypothetical_protein_174049..174199_POSITIVE