Origin IGS: ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaagtgcggtgggttttggaagtgtttttacaacattaataattattgctagcgaagggattaactatttcaaatagttgagttagatcacagacaaaaaattaagaaactcctataattagaaaagtctagttataggagtttttatttatgaaaaaaatttttttgattagtagtatattaactattacatcatgctcgtcttttacttctgataatattcttagtggagatctatctgttagtgatacatctgtatctgacgaaattttatgcctttctgcattcacttctgaagtaaaactaccaaaatctaaaattcaacaaaatataattaatgagataactaaaagaaatattacaccagagcaatgctccagttatgcagtttccaaagctggtggagtagattctttttgttctgatttcaatcgcggatatgtatcaggtgacagtgcaaaaatgactagttttgggcattatattaccttgcaagatatgctgtcagtacaaaaaactttgggtattgattgcaatacaaaacagtatgtacaggagtacaatagagcgcgtgaacaaaataattgggtgaatgaaccatctagtgaaaataataatttctcaaaagcatggggaatgtttcaaccgaaaacaaatgttataagttgtatgtcacttggttcttctacaatgtgtaatgacacaaaaggtaattctttgcatataaataa Mask Tandem Repeat Region ================================================ ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Find is-nt database================================================ Query_seq: AA01770:AA01772|AA01770:AA01772:hypothetical protein:shikimate 5-dehydrogenase protein:->->:1193458..1194189 732 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01770:AA01772|AA01770:AA01772:hypothetical protein:shikimate 5-dehydrogenase protein:->->:1193458..1194189 732 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01770:AA01772|AA01770:AA01772:hypothetical protein:shikimate 5-dehydrogenase protein:->->:1193458..1194189 732 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 114 End: 224 ................................................................................................................. M I I F T R W F I H P I I L F T R S I V L L Y I L F C I A I N T Q S F L Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 131 End: 244 .................................................................................................................................. M V H S P N Y F V H A L Y C T P V H T V L Y C N Q Y P K F F V L T A Y L A R ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 52 Strand: + Start: 94 End: 249 ............................................................................................. M P H A F E K L L F S L D G S F T Q L F C S R A L L Y S C T Y C F V L Q S I P K V F C T D S I S C K V I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 291 End: 425 .................................................................................................................................................................................................................................................................................................. M S A I E I R T K R I Y S T S F G N C I T G A L L W C N I S F S Y L I N Y I L L N F R F W ................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 412 End: 600 ........................................................................................................................................................................................................................................................................................................................................................................................................................... M L D F G S F T S E V N A E R H K I S S D T D V S L T D R S P L R I L S E V K D E H D V I V N I L L I K K I F F I N K N .................................................................................................................................... Protein_Len: 39 Strand: - Start: 143 End: 259 .............................................................................................................................................. G I I K N V R E I T S R Y M S N Q I A I L V W L K K Y Q C C I K C P L I I G M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 581 .. N Q Q I K S K P L K V E S T F A S L C L I E D S V S T D S V S L D G S L I N D S T F S S C S T I T L I S S I L F I K K M ....................................................................................................................................................... ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 613 End: 642 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAAAAAATTAAGAAACTCCTATAAT.......................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 95 HP_score: -7.7 Tail_Score: -5.43414 Start: 584 End: 630 Full_Region: AAATTTTTTTCATAA ATAAAAACTCCTATAACTAGA CTTT TCTAATTATAGGAGTTTCTTAA TTTTTTGTCTGTGAT .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAACTCCTATAACTAGACTTTTCTAATTATAGGAGTTTCTTAA...................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -11.8 Tail_Score: -4.54301 Start: 591 End: 622 Full_Region: TTTCATAAATAAAAA CTCCTATAACTAGA CTTT TCTAATTATAGGAG TTTCTTAATTTTTTG ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTATAACTAGACTTTTCTAATTATAGGAG.............................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -14.0 Tail_Score: -5.38054 Start: 591 End: 622 Full_Region: caaaaaattaagaaa ctcctataattaga aaag tctagttataggag tttttatttatgaaa ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctcctataattagaaaagtctagttataggag.............................................................................................................. Find igs database================================================ Query_seq: AA01770:AA01772|AA01770:AA01772:hypothetical protein:shikimate 5-dehydrogenase protein:->->:1193458..1194189 732 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatcaaaaaaatttttttcataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Intra-Species Hit: Count: 1 Min: 1 Max: 732 Len: 732 Subject: aact_AA01770_AA01772|hypothetical protein:shikimate 5-dehydrogenase protein|POSITIVE:POSITIVE|[1193458,1194189]|732 HSP 1 e-value: 0.0 bit: 1118.0 Len: 564 Query Start:1 Query End:564 Subject Strand: POSITIVE Subject Start: 1 Subject End: 564 ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatc........................................................................................................................................................................ ttatttatatgcaaagaattaccttttgtgtcattacacattgtagaagaaccaagtgacatacaacttataacatttgttttcggttgaaacattccccatgcttttgagaaattattattttcactagatggttcattcacccaattattttgttcacgcgctctattgtactcctgtacatactgttttgtattgcaatcaatacccaaagttttttgtactgacagcatatcttgcaaggtaatataatgcccaaaactagtcatttttgcactgtcacctgatacatatccgcgattgaaatcagaacaaaaagaatctactccaccagctttggaaactgcataactggagcattgctctggtgtaatatttcttttagttatctcattaattatattttgttgaattttagattttggtagttttacttcagaagtgaatgcagaaaggcataaaatttcgtcagatacagatgtatcactaacagatagatctccactaagaatattatcagaagtaaaagacgagcatgatgtaatagttaatatactactaatc........................................................................................................................................................................ HSP 2 e-value: 1.0E-81 bit: 305.0 Len: 154 Query Start:579 Query End:732 Subject Strand: POSITIVE Subject Start: 579 Subject End: 732 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cataaataaaaactcctataactagacttttctaattataggagtttcttaattttttgtctgtgatctaactcaactatttgaaatagttaatcccttcgctagcaataattattaatgttgtaaaaacacttccaaaacccaccgcacttta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUUUAUAUGCAAAGAAUUACCUUUUGUGUCAUUACACAUUGUAGAAGAACCAAGUGACAUACAACUUAUAACAUUUGUUUUCGGUUGAAACAUUCCCCAUGCUUUUGAGAAAUUAUUAUUUUCACUAGAUGGUUCAUUCACCCAAUUAUUUUGUUCACGCGCUCUAUUGUACUCCUGUACAUACUGUUUUGUAUUGCAAUCAAUACCCAAAGUUUUUUGUACUGACAGCAUAUCUUGCAAGGUAAUAUAAUGCCCAAAACUAGUCAUUUUUGCACUGUCACCUGAUACAUAUCCGCGAUUGAAAUCAGAACAAAAAGAAUCUACUCCACCAGCUUUGGAAACUGCAUAACUGGAGCAUUGCUCUGGUGUAAUAUUUCUUUUAGUUAUCUCAUUAAUUAUAUUUUGUUGAAUUUUAGAUUUUGGUAGUUUUACUUCAGAAGUGAAUGCAGAAAGGCAUAAAAUUUCGUCAGAUACAGAUGUAUCACUAACAGAUAGAUCUCCACUAAGAAUAUUAUCAGAAGUAAAAGACGAGCAUGAUGUAAUAGUUAAUAUACUACUAAUCAAAAAAAUUUUUUUCAUAAAUAAAAACUCCUAUAACUAGACUUUUCUAAUUAUAGGAGUUUCUUAAUUUUUUGUCUGUGAUCUAACUCAACUAUUUGAAAUAGUUAAUCCCUUCGCUAGCAAUAAUUAUUAAUGUUGUAAAAACACUUCCAAAACCCACCGCACUUUA .........(((.(((......)))..((((..((((((((((..((((((....((((((..(((((...(((....)))...))))).........((((.((..((((((.......))))))..))))))...................)).))))..((((...(((((....)))))..(((....((((((....)))))).....((((((.((.(((((.(((.....)))..((((......))))........(((.((((((((...((((((((.........((.((..(((((..(((.(((((((.......((((.((...(....).))......(((((...)))))))))......))))))).)))......(((((........)))))......)))))..)).))......))))..)))).)))))))))))..........)))))....((((.((((.......)))).))))..)).)))))).....)))...........)))).((((....((((......))))...))))........))))))........((((((((((((.((((....)))).))))))))))))..(((((..((((..((((........((((((.....)))))).......))))..)))).))))).))))).)))))..))))..............)))..... (-150.14) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGUGCGGUGGGUUUUGGAAGUGUUUUUACAACAUUAAUAAUUAUUGCUAGCGAAGGGAUUAACUAUUUCAAAUAGUUGAGUUAGAUCACAGACAAAAAAUUAAGAAACUCCUAUAAUUAGAAAAGUCUAGUUAUAGGAGUUUUUAUUUAUGAAAAAAAUUUUUUUGAUUAGUAGUAUAUUAACUAUUACAUCAUGCUCGUCUUUUACUUCUGAUAAUAUUCUUAGUGGAGAUCUAUCUGUUAGUGAUACAUCUGUAUCUGACGAAAUUUUAUGCCUUUCUGCAUUCACUUCUGAAGUAAAACUACCAAAAUCUAAAAUUCAACAAAAUAUAAUUAAUGAGAUAACUAAAAGAAAUAUUACACCAGAGCAAUGCUCCAGUUAUGCAGUUUCCAAAGCUGGUGGAGUAGAUUCUUUUUGUUCUGAUUUCAAUCGCGGAUAUGUAUCAGGUGACAGUGCAAAAAUGACUAGUUUUGGGCAUUAUAUUACCUUGCAAGAUAUGCUGUCAGUACAAAAAACUUUGGGUAUUGAUUGCAAUACAAAACAGUAUGUACAGGAGUACAAUAGAGCGCGUGAACAAAAUAAUUGGGUGAAUGAACCAUCUAGUGAAAAUAAUAAUUUCUCAAAAGCAUGGGGAAUGUUUCAACCGAAAACAAAUGUUAUAAGUUGUAUGUCACUUGGUUCUUCUACAAUGUGUAAUGACACAAAAGGUAAUUCUUUGCAUAUAAAUAA ....((((((.(((((......(((((.(((((.((((..............((((.(..((.....))..).....((((((((((((...((((.........(((((((((((((((((((....)))))))))))))))))))....................(((((((((((......))))))).)))).....))))((((((((.((.....(((((((((.((((.((((.......)))).)))).)).)))).))).....((((......)))).....)).)))))))).........)))))..))))))).............(((((((((.(((((((.((((.((((((......(((.((....)).)))........)))))).))))..))))))).)))...)))))).)))).((...(.(((((((((((.(((((..(((((...((((((((.((((..(((((((....(((((((((.....((((....)))).((((((....))))))...))))))))).)))).)))..)))).))...((((.......((((((((.......))))))))..........((((((((......))))))))..)))).))))))......)))))...)))))))))))))))).).))...))))))))).))))).......))))).))))))........ (-179.96) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 405 370 323 52 4 aact:AA01666|5end_penicillin-binding_protein_4;_D-alanyl-D-alanine_carboxypeptidase;_D-alanyl-D-alanine-endopeptidase_1128231..1128461_POSITIVE 392 730 690 143 93 aact:AA02449|5end_hypothetical_protein_1687575..1687805_POSITIVE 365 730 697 182 148 aact:AA01824|5end_iron(III)_ABC_transporter,_ATP-binding_protein_1227705..1227935_POSITIVE 365 730 697 40 6 aact:AA01823|5end_hypothetical_protein_1227563..1227793_POSITIVE 337 730 693 191 155 aact:AA01095|5end_conserved_hypothetical_protein_756327..756557_POSITIVE 325 730 703 183 156 aact:AA00679|5end_cytoplasmic_axial_filament_(Ribonuclease_G)_463288..463518_POSITIVE 306 730 703 108 81 aact:AA01008|5end_mazG_beta-lactamase_regulatory_protein_homolog_703470..703700_POSITIVE 295 368 322 53 12 aact:AA01732|5end_multidrug_resistance_protein_A_1170677..1170907_POSITIVE 293 730 693 43 6 aact:AA01770|5end_hypothetical_protein_1193111..1193341_POSITIVE 293 370 322 175 126 aact:AA00521|5end_phosphatase_357744..357974_POSITIVE 291 310 267 186 133 aact:AA01441|5end_tRNA/rRNA_methylase_966490..966720_POSITIVE 290 373 331 215 160 aact:AA00298|5end_hypothetical_protein_203624..203854_POSITIVE 289 730 698 164 132 aact:AA01981|5end_4-alpha-glucanotransferase_1337202..1337432_POSITIVE 288 163 122 191 137 aact:AA00282|5end_peptidyl-prolyl_cis-trans_isomerase;_macrophage_infectivity_potentiator_198834..199064_POSITIVE 287 376 331 177 135 aact:AA00938|5end_L-xylulokinase_647556..647786_POSITIVE 283 730 696 215 175 aact:AA00580|5end_conserved_hypothetical_protein_(possible_membrane_protein)_397003..397233_POSITIVE 282 370 328 120 66 aact:AA02880|5end_50S_ribosomal_protein_L21_2020757..2020987_POSITIVE 282 371 331 111 76 aact:AA00161|5end_pilin_B_biogenesis_protein;_fimbrial_transcription_regulation_113384..113614_POSITIVE 280 730 694 219 180 aact:AA02733|5end_cell_division_protein_K;_sporulation_protein_spoIIIE_1912208..1912438_POSITIVE 280 730 696 192 153 aact:AA00268|5end_acyl_carrier_protein_(ACP)_188104..188334_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 392 730 690 71 21 aact:AA02446|3end_conserved_hypothetical_protein_1687583..1687733_POSITIVE 365 730 697 144 110 aact:AA01823|3end_hypothetical_protein_1227747..1227897_POSITIVE 365 730 697 68 34 aact:AA01822|3end_lysostaphin_precursor_1227671..1227821_POSITIVE 337 730 693 145 109 aact:AA01092|3end_hypothetical_protein_756361..756511_POSITIVE 325 730 703 63 36 aact:AA00675|3end_glutaredoxin_2_463248..463398_POSITIVE 312 730 697 84 53 aact:AA02697|3end_hydrogenase_3_maturation_protease_1880408..1880558_POSITIVE 304 730 699 82 46 aact:AA02443|3end_cytochrome_C_related_protein_1686590..1686740_POSITIVE 304 730 699 127 91 aact:AA02444|3end_hypothetical_protein_1686635..1686785_POSITIVE 291 310 267 114 61 aact:AA01439|3end_probable_ferredoxin_(fdx-2)_966498..966648_POSITIVE 290 374 331 62 5 aact:AA01731|3end_multidrug_resistance_protein_B_1170675..1170825_POSITIVE 289 730 698 139 107 aact:AA01978|3end_hypothetical_protein_1337257..1337407_POSITIVE 288 730 705 80 55 aact:AA02865|3end_iron-regulated_outer_membrane_protein_(omp64)_2012542..2012692_POSITIVE 287 376 331 66 24 aact:AA00937|3end_L-xylulokinase_647525..647675_POSITIVE 283 730 696 87 47 aact:AA00579|3end_probable_DNA_recombination_protein_396955..397105_POSITIVE 282 371 331 81 46 aact:AA00160|3end_pilA-like_biogenesis_protein_/_prepilin_peptidase_dependent_proteinD_113434..113584_POSITIVE 280 730 694 123 84 aact:AA02731|3end_outer_membrane_lipoprotein_carrier_precursor_1912192..1912342_POSITIVE 280 730 696 151 112 aact:AA00267|3end_hypothetical_protein_188143..188293_POSITIVE 266 730 693 81 46 aact:AA02671|3end_gluconokinase_1858917..1859067_POSITIVE 264 730 681 75 18 aact:AA01457|3end_D-xylose_ABC_transporter,_membrane_spanning_protein_978808..978958_POSITIVE 263 296 252 135 91 aact:AA02544|3end_ATP-dependent_RNA_helicase_1773945..1774095_POSITIVE