Origin IGS: taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttagcgctttcctctttctgtgttgttgaatagcttcttttctgtgtactcaaccaatctcatttgtgtcaatagcatttcgtgagacatcttagctatatctaaaattagcttcttaccttttgtatcacttcttctataccagtttaataaaattttttcctccatatttaccaagacgtatgcatccgcatctttgggagtgattggttgttcctctatcgatatatcttcagggtctaaagggtggtcaatcctctttttagaggtactagttaagagttgacttagctcatccccttttctgccagttagaatgtattcgacgtttagttttagttctgaatgttttaaatctgccagcatcaatgcttctttaggaaatactcctcggcgttttctttctgcaaatgcgcttttagacatgcctaaaaattcagcaatatccttatccatggataccgatagttcagtttttaatcgattgacgatatctgtgaaatttttcataaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaactaaactacccactcaatttaatatttaatcatatagttcaatattgtttactgagttcatattaaatatgaactttatgaattgcaaggtttttttatgaaaaatttcacagatatcgtcaatcgattaaaaactgaactatcggtatccatggataaggatattgctgaatttttaggcatgtctaaaagcgcatttgcagaaagaaaacgccgaggagtatttcctaaagaagcattgatgctggcagatttaaaacattcagaactaaaactaaacgtcgaatacattctaactggcagaaaaggggatgagctaagtcaactcttaactagtacctctaaaaagaggattgaccaccctttagaccctgaagatatatcgatagaggaacaaccaatcactcccaaagatgcggatgcatacgtcttggtaaatatggaggaaaaaattttattaaactggtatagaagaagtgatacaaaaggtaagaagctaattttagatatagctaagatgtctcacgaaatgctattgacacaaatgagattggttgagtacacagaaaagaagctattcaacaacacagaaagaggaaagcgctaaatcaataaactatttatatttcaaatagttgtaacaatcataactacacagaataaaaacgaaagaactacacagaataaaaaatttactgtgtactacatttaacccaactggcgcagcattagcctttaatagatttattaaagaaagagattaaaggcgataagatttactta Mask Tandem Repeat Region ================================================ taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttagcgctttcctctttctgtgttgttgaatagcttcttttctgtgtactcaaccaatctcatttgtgtcaatagcatttcgtgagacatcttagctatatctaaaattagcttcttaccttttgtatcacttcttctataccagtttaataaaattttttcctccatatttaccaagacgtatgcatccgcatctttgggagtgattggttgttcctctatcgatatatcttcagggtctaaagggtggtcaatcctctttttagaggtactagttaagagttgacttagctcatccccttttctgccagttagaatgtattcgacgtttagttttagttctgaatgttttaaatctgccagcatcaatgcttctttaggaaatactcctcggcgttttctttctgcaaatgcgcttttagacatgcctaaaaattcagcaatatccttatccatggataccgatagttcagtttttaatcgattgacgatatctgtgaaatttttcataaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Find is-nt database================================================ Query_seq: AA01763:AA01764|AA01763:AA01764:conserved hypothetical protein (possible transcriptional regulatory protein):hypothetical protein:->->:1190879..1191665 787 taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttagcgctttcctctttctgtgttgttgaatagcttcttttctgtgtactcaaccaatctcatttgtgtcaatagcatttcgtgagacatcttagctatatctaaaattagcttcttaccttttgtatcacttcttctataccagtttaataaaattttttcctccatatttaccaagacgtatgcatccgcatctttgggagtgattggttgttcctctatcgatatatcttcagggtctaaagggtggtcaatcctctttttagaggtactagttaagagttgacttagctcatccccttttctgccagttagaatgtattcgacgtttagttttagttctgaatgttttaaatctgccagcatcaatgcttctttaggaaatactcctcggcgttttctttctgcaaatgcgcttttagacatgcctaaaaattcagcaatatccttatccatggataccgatagttcagtttttaatcgattgacgatatctgtgaaatttttcataaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01763:AA01764|AA01763:AA01764:conserved hypothetical protein (possible transcriptional regulatory protein):hypothetical protein:->->:1190879..1191665 787 taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttagcgctttcctctttctgtgttgttgaatagcttcttttctgtgtactcaaccaatctcatttgtgtcaatagcatttcgtgagacatcttagctatatctaaaattagcttcttaccttttgtatcacttcttctataccagtttaataaaattttttcctccatatttaccaagacgtatgcatccgcatctttgggagtgattggttgttcctctatcgatatatcttcagggtctaaagggtggtcaatcctctttttagaggtactagttaagagttgacttagctcatccccttttctgccagttagaatgtattcgacgtttagttttagttctgaatgttttaaatctgccagcatcaatgcttctttaggaaatactcctcggcgttttctttctgcaaatgcgcttttagacatgcctaaaaattcagcaatatccttatccatggataccgatagttcagtttttaatcgattgacgatatctgtgaaatttttcataaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01763:AA01764|AA01763:AA01764:conserved hypothetical protein (possible transcriptional regulatory protein):hypothetical protein:->->:1190879..1191665 787 taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttagcgctttcctctttctgtgttgttgaatagcttcttttctgtgtactcaaccaatctcatttgtgtcaatagcatttcgtgagacatcttagctatatctaaaattagcttcttaccttttgtatcacttcttctataccagtttaataaaattttttcctccatatttaccaagacgtatgcatccgcatctttgggagtgattggttgttcctctatcgatatatcttcagggtctaaagggtggtcaatcctctttttagaggtactagttaagagttgacttagctcatccccttttctgccagttagaatgtattcgacgtttagttttagttctgaatgttttaaatctgccagcatcaatgcttctttaggaaatactcctcggcgttttctttctgcaaatgcgcttttagacatgcctaaaaattcagcaatatccttatccatggataccgatagttcagtttttaatcgattgacgatatctgtgaaatttttcataaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 180 Max: 686 Len: 507 Subject: UniRef90_UPI0000397296 Cluster: hypothetical protein Haso02000607; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02000607 - Haemophilus somnus 2336 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 507 Query Start:180 Query End:686 Subject Strand: null Subject Start: 1 Subject End: 172 ................................................................................................................................................................................... M K N F T D I V N R L K T E L S V S M D K D I A E F L G M S K S A F A E R K R R G V F P K E A L M L A D L K H S E L K L N V E Y I L T G R K - - - G D E L S Q L L T S T S K K R I D H P L D P E D I S I E E Q P I T P K D A D A Y V L V N M E E K I L L N W Y R R S D T K G K K L I L D I A K M S H E M L L T Q M R L V E Y T E K K L F N N T E R G K R ..................................................................................................... ................................................................................................................................................................................... M K N F T D I A N R L K T E L S L T M D K E V A E L L K M S K S A F A E R K R R G V F P E N A L R L L E L E R P D L K L D I N Y I L S G I R E P N N A N N E D L V N A I K D K A T E I D M D D Y S A T I N P S L I T P S D A I N P V L L N M D E I K L L A N F R R S D T Q G K Q L I S E T A K M C C K H S I A N M R L A E Y T E K E L L D Y T K R N P K ..................................................................................................... taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 36 End: 164 ................................... M N L L K A N A A P V G L N V V H S K F F I L C S S F V F I L C S Y D C Y N Y L K Y K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 265 End: 459 ........................................................................................................................................................................................................................................................................ M L A I S K I S F L P F V S L L L Y Q F N K I F S S I F T K T Y A S A S L G V I G C S S I D I S S G S K G W S I L F L E ........................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 481 End: 705 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P V R M Y S T F S F S S E C F K S A S I N A S L G N T P R R F L S A N A L L D M P K N S A I S L S M D T D S S V F N R .................................................................................. Protein_Len: 32 Strand: + Start: 660 End: 755 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M D D I C E I F H K K T L Q F I K F I F N M N S V N N I E L Y D ................................ Protein_Len: 60 Strand: - Start: 180 End: 722 ................................................................................................................................................................................... L A E K P F V G R R K R E A F A S K S M G L F E A I D K D M S V S L E T K L R N V I D T F N K M F F G Q L E Y L E Y K M ................................................................. Protein_Len: 34 Strand: - Start: 75 End: 176 .......................................................................... I Y Y V T F K K N Q T T R E N K N Q T T I I T V V I Q F I F L K N M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 23 End: 124 ...................... D R E K I F R N F A L A A G T P N F T T C L L N K I R H L E K T K M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 58 HP_score: -2.5 Tail_Score: -4.39696 Start: 149 End: 167 Full_Region: TTATGATTGTTACAA CTATTTG AAATA TAAATAG TTTATTGATTTAGCG ....................................................................................................................................................CTATTTGAAATATAAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 85 HP_score: -9.0 Tail_Score: -3.97368 Start: 710 End: 728 Full_Region: aatattgtttactga gttcatat taa atatgaac tttatgaattgcaag .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gttcatattaaatatgaac........................................................... Find igs database================================================ Query_seq: AA01763:AA01764|AA01763:AA01764:conserved hypothetical protein (possible transcriptional regulatory protein):hypothetical protein:->->:1190879..1191665 787 taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaaccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Intra-Species Hit: Count: 1 Min: 1 Max: 787 Len: 787 Subject: aact_AA01763_AA01764|conserved hypothetical protein (possible transcriptional regulatory protein):hypothetical protein|POSITIVE:POSITIVE|[1190879,1191665]|787 HSP 1 e-value: 2.0E-96 bit: 355.0 Len: 179 Query Start:1 Query End:179 Subject Strand: POSITIVE Subject Start: 1 Subject End: 179 taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgattta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ taagtaaatcttatcgcctttaatctctttctttaataaatctattaaaggctaatgctgcgccagttgggttaaatgtagtacacagtaaattttttattctgtgtagttctttcgtttttattctgtgtagttatgattgttacaactatttgaaatataaatagtttattgattta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 8.0E-46 bit: 186.0 Len: 94 Query Start:694 Query End:787 Subject Strand: POSITIVE Subject Start: 694 Subject End: 787 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccttgcaattcataaagttcatatttaatatgaactcagtaaacaatattgaactatatgattaaatattaaattgagtgggtagtttagttca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGUAAAUCUUAUCGCCUUUAAUCUCUUUCUUUAAUAAAUCUAUUAAAGGCUAAUGCUGCGCCAGUUGGGUUAAAUGUAGUACACAGUAAAUUUUUUAUUCUGUGUAGUUCUUUCGUUUUUAUUCUGUGUAGUUAUGAUUGUUACAACUAUUUGAAAUAUAAAUAGUUUAUUGAUUUAGCGCUUUCCUCUUUCUGUGUUGUUGAAUAGCUUCUUUUCUGUGUACUCAACCAAUCUCAUUUGUGUCAAUAGCAUUUCGUGAGACAUCUUAGCUAUAUCUAAAAUUAGCUUCUUACCUUUUGUAUCACUUCUUCUAUACCAGUUUAAUAAAAUUUUUUCCUCCAUAUUUACCAAGACGUAUGCAUCCGCAUCUUUGGGAGUGAUUGGUUGUUCCUCUAUCGAUAUAUCUUCAGGGUCUAAAGGGUGGUCAAUCCUCUUUUUAGAGGUACUAGUUAAGAGUUGACUUAGCUCAUCCCCUUUUCUGCCAGUUAGAAUGUAUUCGACGUUUAGUUUUAGUUCUGAAUGUUUUAAAUCUGCCAGCAUCAAUGCUUCUUUAGGAAAUACUCCUCGGCGUUUUCUUUCUGCAAAUGCGCUUUUAGACAUGCCUAAAAAUUCAGCAAUAUCCUUAUCCAUGGAUACCGAUAGUUCAGUUUUUAAUCGAUUGACGAUAUCUGUGAAAUUUUUCAUAAAAAAACCUUGCAAUUCAUAAAGUUCAUAUUUAAUAUGAACUCAGUAAACAAUAUUGAACUAUAUGAUUAAAUAUUAAAUUGAGUGGGUAGUUUAGUUCA ((((.....))))..(((((((((...................)))))))))....(((((.(((.(..(.((((......(((((((.............)))))))...........((((.((.((((((((...((((((((.......((((.........(((.(((((((.((((((.((........((((((((((((.((.......(((.(((..(((((((((.(....(((......(((....((((((......(((((..........)))))))))))....)))..)))..........................................(((((..(.((((....))))))))))..).)))))))))..........(((((((((....(((..((((((.(((....(((((....)))))....(((((((......))))))).)))))))))...)))....)).))))))).(((((((((........))))))))).......)))))).......))......((((.....)))).(((((..(((....((......))....))).))))).....))))))))))))...((((....))))..)).)))...)))...))))))).)))......((((((....))))))..............))))...(((((((((...)))))))))..)).))))))....)))))))))).))))..)))).)..).))))))))........ (-162.97) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAACUAAACUACCCACUCAAUUUAAUAUUUAAUCAUAUAGUUCAAUAUUGUUUACUGAGUUCAUAUUAAAUAUGAACUUUAUGAAUUGCAAGGUUUUUUUAUGAAAAAUUUCACAGAUAUCGUCAAUCGAUUAAAAACUGAACUAUCGGUAUCCAUGGAUAAGGAUAUUGCUGAAUUUUUAGGCAUGUCUAAAAGCGCAUUUGCAGAAAGAAAACGCCGAGGAGUAUUUCCUAAAGAAGCAUUGAUGCUGGCAGAUUUAAAACAUUCAGAACUAAAACUAAACGUCGAAUACAUUCUAACUGGCAGAAAAGGGGAUGAGCUAAGUCAACUCUUAACUAGUACCUCUAAAAAGAGGAUUGACCACCCUUUAGACCCUGAAGAUAUAUCGAUAGAGGAACAACCAAUCACUCCCAAAGAUGCGGAUGCAUACGUCUUGGUAAAUAUGGAGGAAAAAAUUUUAUUAAACUGGUAUAGAAGAAGUGAUACAAAAGGUAAGAAGCUAAUUUUAGAUAUAGCUAAGAUGUCUCACGAAAUGCUAUUGACACAAAUGAGAUUGGUUGAGUACACAGAAAAGAAGCUAUUCAACAACACAGAAAGAGGAAAGCGCUAAAUCAAUAAACUAUUUAUAUUUCAAAUAGUUGUAACAAUCAUAACUACACAGAAUAAAAACGAAAGAACUACACAGAAUAAAAAAUUUACUGUGUACUACAUUUAACCCAACUGGCGCAGCAUUAGCCUUUAAUAGAUUUAUUAAAGAAAGAGAUUAAAGGCGAUAAGAUUUACUUA (((((((...............................))))))).....(((((..((((((((((...))))))))))..)))))......(((((((((.((((.(((((.(((..((((.....))))......))).....(((((((((........)))).((((((..((((((((....))))))))..))...)))).........)))))))))).)))).)))))))))..((((((((((((.............................((((((((..(((.....((....((((((....((.((((......)))).))....(((((....)))))........))))))....)).)))..))).)))))...((..(((((((((.((((......((((((((....)))))..))).....))))..................((..((((.....((((.((....(((.....))).(((((((......))))))))).))))......))))...)).......)))))))))(((((((((.(((.....(((((...........................................(((((....(((((((.......)))))))....)))))....(....).........))))).....))).))))))))).........))..)).)).))))))))(((((((((...(((.......)))...)))))))))............... (-155.08) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 352 608 567 222 170 aact:AA00208|5end_D-ribose_ABC_transporter,_permease_protein_/_Galactoside_transport_system_permease_protein_144097..144327_POSITIVE 350 90 50 57 13 aact:AA00052|5end_cytochrome_c-type_biogenesis_protein_precursor_40842..41072_POSITIVE 340 573 532 54 20 aact:AA00325|5end_conserved_hypothetical_protein_221314..221544_POSITIVE 330 506 466 110 59 aact:AA01840|5end_conserved_hypothetical_protein_1237088..1237318_POSITIVE 315 208 166 159 117 aact:AA01532|5end_hypothetical_protein_1028771..1029001_POSITIVE 315 208 166 93 51 aact:AA01531|5end_hypothetical_protein_1028705..1028935_POSITIVE 313 606 567 220 178 aact:AA02222|5end_conserved_hypothetical_protein_1512173..1512403_POSITIVE 309 82 57 32 8 aact:AA00281|5end_phosphatidylserine_decarboxylase_proenzyme_197939..198169_POSITIVE 308 393 357 76 38 aact:AA02421|5end_conserved_hypothetical_protein_1667044..1667274_POSITIVE 308 393 357 82 44 aact:AA02297|5end_conserved_hypothetical_protein_1569620..1569850_POSITIVE 308 393 357 82 44 aact:AA00621|5end_conserved_hypothetical_protein_428727..428957_POSITIVE 308 393 357 82 44 aact:AA00412|5end_conserved_hypothetical_protein_279174..279404_POSITIVE 303 575 535 64 20 aact:AA00823|5end_heat_shock_protein_565006..565236_POSITIVE 301 399 360 138 97 aact:AA02218|5end_deoxyribose-phosphate_aldolase_(fragment?)_1509758..1509988_POSITIVE 297 606 564 51 5 aact:AA01071|5end_RNA_methyltransferase_741707..741937_POSITIVE 296 607 565 161 111 aact:AA01237|5end_preprotein_translocase_842897..843127_POSITIVE 295 399 356 175 120 aact:AA02723|5end_hypothetical_protein_1906263..1906493_POSITIVE 294 440 391 189 146 aact:AA02434|5end_membrane_protein_1678547..1678777_POSITIVE 294 400 352 155 106 aact:AA00686|5end_hypothetical_protein_468852..469082_POSITIVE 291 604 563 62 26 aact:AA00990|5end_conserved_hypothetical_protein_692559..692789_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 350 90 50 54 10 aact:AA00050|3end_cytochrome_c-type_biogenesis_protein_precursor_(reductase)_40919..41069_POSITIVE 321 598 551 144 93 aact:AA02947|3end_riboflavin_biosynthesis_protein_2061874..2062024_POSITIVE 315 208 166 57 15 aact:AA01530|3end_conserved_hypothetical_protein_1028749..1028899_POSITIVE 306 571 534 92 54 aact:AA01901|3end_hypothetical_protein_1282870..1283020_POSITIVE 301 399 360 135 94 aact:AA02217|3end_deoxyribose-phosphate_aldolase_1509835..1509985_POSITIVE 295 604 565 148 104 aact:AA01236|3end_50S_ribosomal_protein_L15_842970..843120_POSITIVE 294 400 352 84 35 aact:AA00684|3end_adenylosuccinate_synthase_468861..469011_POSITIVE 291 592 551 115 59 aact:AA01705|3end_beta-galactosidase_1157980..1158130_POSITIVE 291 604 563 67 31 aact:AA00989|3end_hypothetical_protein_692644..692794_POSITIVE 290 558 511 59 14 aact:AA01128|3end_hypothetical_protein_774202..774352_POSITIVE 286 134 102 147 114 aact:AA03015|3end_hypothetical_protein_2105251..2105401_POSITIVE 282 225 182 135 93 aact:AA02525|3end_conserved_hypothetical_protein_1755302..1755452_POSITIVE 281 227 181 123 64 aact:AA00789|3end_DNA_topoisomerase_III_542545..542695_POSITIVE 280 214 180 126 78 aact:AA02940|3end_conserved_hypothetical_protein_2058652..2058802_POSITIVE 279 577 534 138 98 aact:AA01673|3end_riboflavin_synthase,_alpha_chain_1132093..1132243_POSITIVE 277 520 472 90 44 aact:AA01565|3end_conserved_hypothetical_protein_1050967..1051117_POSITIVE 276 391 353 80 39 aact:AA00807|3end_fumarate_reductase_13_kD_hydrophobic_protein_553188..553338_POSITIVE 274 605 564 147 113 aact:AA01393|3end_ABC_transporter,_ATP-binding_protein_942029..942179_POSITIVE 273 605 564 95 61 aact:AA02280|3end_conserved_hypothetical_protein_1552767..1552917_POSITIVE 272 405 365 60 22 aact:AA03008|3end_GTP-binding_protein_era_homolog_(GTPase)_2101072..2101222_POSITIVE