Origin IGS: taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttttggtggagctggggggagttgaacccccgtccgaaattcctctgccgttagcactacacgtttagtccggtctttaaattcacttaatcctgcggacggacacgcgacaattaagctagtttgatttaatttaatgcttcgatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctaaaggcaggttattaagctgctaaagcgtattgttcgtcgtttgcgactatttttttgcggtttatttacgaggcctaccgcacctcgacgtgcacttcgggcttcgctaatcccgtcgaatccagaatcagccccaaattgcgctaatgatagcaaaatatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaacggattagcgcatcacaaatcgtctaataattacgcagaaaattaagtcgccacaaaatgaaaaggggaaaccatgtcactttctgatttattaacacgatcgacatcccatgcgctattaagatcccgagagatggctcatctgcttaccatttaaggatatgatatttatcagcataaagtacggcaggtttactatctttcatttaacgctatattttgctatcattagcgcaatttggggctgattctggattcgacgggattagcgaagcccgaagtgcacgtcgaggtgcggtaggcctcgtaaataaaccgcaaaaaaatagtcgcaaacgacgaacaatacgctttagcagcttaataacctgcctttagccttcgctccccagcttccgctcgtaagacggggataaagcggagtcaaaccaaaacgagctcgtgtggaagccaccgtttgaggatcgaagcattaaattaaatcaaactagcttaattgtcgcgtgtccgtccgcaggattaagtgaatttaaagaccggactaaacgtgtagtgctaacggcagaggaatttcggacgggggttcaactccccccagctccaccaaaacatagtccaaagcaaactttacaaaacctaaaagcccttgaaaatattaacctcaagggcttttttatttcctaagcgttccta Mask Tandem Repeat Region ================================================ taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttttggtggagctggggggagttgaacccccgtccgaaattcctctgccgttagcactacacgtttagtccggtctttaaattcacttaatcctgcggacggacacgcgacaattaagctagtttgatttaatttaatgcttcgatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctaaaggcaggttattaagctgctaaagcgtattgttcgtcgtttgcgactatttttttgcggtttatttacgaggcctaccgcacctcgacgtgcacttcgggcttcgctaatcccgtcgaatccagaatcagccccaaattgcgctaatgatagcaaaatatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Find is-nt database================================================ Query_seq: AA01551:AA01552|AA01551:AA01552:hypothetical protein:hypothetical protein:->->:1038435..1039132 698 taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttttggtggagctggggggagttgaacccccgtccgaaattcctctgccgttagcactacacgtttagtccggtctttaaattcacttaatcctgcggacggacacgcgacaattaagctagtttgatttaatttaatgcttcgatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctaaaggcaggttattaagctgctaaagcgtattgttcgtcgtttgcgactatttttttgcggtttatttacgaggcctaccgcacctcgacgtgcacttcgggcttcgctaatcccgtcgaatccagaatcagccccaaattgcgctaatgatagcaaaatatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01551:AA01552|AA01551:AA01552:hypothetical protein:hypothetical protein:->->:1038435..1039132 698 taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttttggtggagctggggggagttgaacccccgtccgaaattcctctgccgttagcactacacgtttagtccggtctttaaattcacttaatcctgcggacggacacgcgacaattaagctagtttgatttaatttaatgcttcgatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctaaaggcaggttattaagctgctaaagcgtattgttcgtcgtttgcgactatttttttgcggtttatttacgaggcctaccgcacctcgacgtgcacttcgggcttcgctaatcccgtcgaatccagaatcagccccaaattgcgctaatgatagcaaaatatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01551:AA01552|AA01551:AA01552:hypothetical protein:hypothetical protein:->->:1038435..1039132 698 taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttttggtggagctggggggagttgaacccccgtccgaaattcctctgccgttagcactacacgtttagtccggtctttaaattcacttaatcctgcggacggacacgcgacaattaagctagtttgatttaatttaatgcttcgatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctaaaggcaggttattaagctgctaaagcgtattgttcgtcgtttgcgactatttttttgcggtttatttacgaggcctaccgcacctcgacgtgcacttcgggcttcgctaatcccgtcgaatccagaatcagccccaaattgcgctaatgatagcaaaatatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 88 Max: 477 Len: 390 Subject: UniRef90_Q65TG4 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 1.0E-16 bit: 89.0 Len: 159 Query Start:319 Query End:477 Subject Strand: null Subject Start: 11 Subject End: 64 .............................................................................................................................................................................................................................................................................................................................. I L L S L - A Q F G A D S G F D G I S E A R S A R R G A V G L V N K P Q K N S R K R R T I R F S S L I T C L ............................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................. I L V K L T A L F G A D S G F D G I G E A Q G A R R G A V G L V N K P Q K N S R K R R T I R F S S L I T C I ............................................................................................................................................................................................................................. Subject: UniRef90_Q57L10 Cluster: Hypothetical protein; n=1; Salmonella choleraesuis|Rep: Hypothetical protein - Salmonella choleraesuis HSP 1 e-value: 5.0E-6 bit: 53.9 Len: 141 Query Start:88 Query End:228 Subject Strand: null Subject Start: 34 Subject End: 80 ....................................................................................... W W S W G E L N P R P K F L C R * H Y T F S P V F K F T * S C G R T R D N * A S L I * F N A S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................... W W S W R E L N P R P K F L H P R Y Y M L S Q S L H S P G T C G R T R H Y Q T S L I R F N A S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 17 End: 106 ................ M K K P L R L I F S R A F R F C K V C F G L C F G G A G G S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 221 End: 316 ............................................................................................................................................................................................................................ M L R S S N G G F H T S S F W F D S A L S P S Y E R K L G S E G .............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 240 End: 338 ............................................................................................................................................................................................................................................... M A S T R A R F G L T P L Y P R L T S G S W G A K A K G R L L S C ........................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 367 End: 462 .............................................................................................................................................................................................................................................................................................................................................................................. M F L R F I Y E A Y R T S T C T S G F A N P V E S R I S P K L R ............................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 329 End: 478 ........................................................................................................................................................................................................................................................................................................................................ M K L L K R I V R R L R L F F C G L F T R P T A P R R A L R A S L I P S N P E S A P N C A N D S K I ............................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 559 End: 648 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S R D L N S A W D V D R V N K S E S D M V S P F H F V A T .................................................. Protein_Len: 33 Strand: + Start: 569 End: 667 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L I A H G M S I V L I N Q K V T W F P L F I L W R L N F L R N Y ............................... Protein_Len: 35 Strand: - Start: 449 End: 553 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ G W I A S I I A F Y L T L H F I T F R G Y K I S I F I M D K F P L C M ................................................................................................................................................. Protein_Len: 53 Strand: - Start: 319 End: 477 .............................................................................................................................................................................................................................................................................................................................. L C T I L S S F R I T R R K R S N K Q P K N V L G V A G R R A S R A E S I G D F G S D A G F Q A L S L L M ............................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 13 End: 252 ............ K P S H K P P A P P L Q V G T R F E E A T L V V R K T R D K F E S L G A S P C A V I L S T Q N L K I S R D E F P P K W M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -5.2 Tail_Score: -5.68438 Start: 25 End: 51 Full_Region: ttacaaaacctaaaa gcccttga aaatattaacc tcaagggc ttttttatttcctaa ........................gcccttgaaaatattaacctcaagggc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 86 HP_score: -3.2 Tail_Score: -5.49809 Start: 352 End: 367 Full_Region: GCTAAAGCGTATTGT TCGTCG TTTG CGACTA TTTTTTTGCGGTTTA ...............................................................................................................................................................................................................................................................................................................................................................TCGTCGTTTGCGACTA........................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -5.8 Tail_Score: -4.36993 Start: 354 End: 365 Full_Region: TAAAGCGTATTGTTC GTCG TTTG CGAC TATTTTTTTGCGGTT .................................................................................................................................................................................................................................................................................................................................................................GTCGTTTGCGAC............................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: AA01551:AA01552|AA01551:AA01552:hypothetical protein:hypothetical protein:->->:1038435..1039132 698 taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta Intra-Species Hit: Count: 1 Min: 1 Max: 698 Len: 698 Subject: aact_AA01551_AA01552|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1038435,1039132]|698 HSP 1 e-value: 1.0E-121 bit: 438.0 Len: 221 Query Start:478 Query End:698 Subject Strand: POSITIVE Subject Start: 478 Subject End: 698 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atagcgttaaatgaaagatagtaaacctgccgtactttatgctgataaatatcatatccttaaatggtaagcagatgagccatctctcgggatcttaatagcgcatgggatgtcgatcgtgttaataaatcagaaagtgacatggtttccccttttcattttgtggcgacttaattttctgcgtaattattagacgatttgtgatgcgctaatccgtttta HSP 2 e-value: 2.0E-43 bit: 178.0 Len: 90 Query Start:229 Query End:318 Subject Strand: POSITIVE Subject Start: 229 Subject End: 318 ....................................................................................................................................................................................................................................atcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggcta............................................................................................................................................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................atcctcaaacggtggcttccacacgagctcgttttggtttgactccgctttatccccgtcttacgagcggaagctggggagcgaaggcta............................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 1.0E-41 bit: 172.0 Len: 87 Query Start:1 Query End:87 Subject Strand: POSITIVE Subject Start: 1 Subject End: 87 taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taggaacgcttaggaaataaaaaagcccttgaggttaatattttcaagggcttttaggttttgtaaagtttgctttggactatgttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGGAACGCUUAGGAAAUAAAAAAGCCCUUGAGGUUAAUAUUUUCAAGGGCUUUUAGGUUUUGUAAAGUUUGCUUUGGACUAUGUUUUGGUGGAGCUGGGGGGAGUUGAACCCCCGUCCGAAAUUCCUCUGCCGUUAGCACUACACGUUUAGUCCGGUCUUUAAAUUCACUUAAUCCUGCGGACGGACACGCGACAAUUAAGCUAGUUUGAUUUAAUUUAAUGCUUCGAUCCUCAAACGGUGGCUUCCACACGAGCUCGUUUUGGUUUGACUCCGCUUUAUCCCCGUCUUACGAGCGGAAGCUGGGGAGCGAAGGCUAAAGGCAGGUUAUUAAGCUGCUAAAGCGUAUUGUUCGUCGUUUGCGACUAUUUUUUUGCGGUUUAUUUACGAGGCCUACCGCACCUCGACGUGCACUUCGGGCUUCGCUAAUCCCGUCGAAUCCAGAAUCAGCCCCAAAUUGCGCUAAUGAUAGCAAAAUAUAGCGUUAAAUGAAAGAUAGUAAACCUGCCGUACUUUAUGCUGAUAAAUAUCAUAUCCUUAAAUGGUAAGCAGAUGAGCCAUCUCUCGGGAUCUUAAUAGCGCAUGGGAUGUCGAUCGUGUUAAUAAAUCAGAAAGUGACAUGGUUUCCCCUUUUCAUUUUGUGGCGACUUAAUUUUCUGCGUAAUUAUUAGACGAUUUGUGAUGCGCUAAUCCGUUUUA (((((..(((((.(((((..((((((((((((((.......))))))))))))))..))))).).)))).....((((((((((((.(((..(((.((((((........))))))..........)))..)))..)))).........)))))))).................))))).(((((((...(((..((((((((......).)))))))...)))...((((((.....((((((((.....((((((......)))))).....(((((.(((((........(((....))))))))...)))))....((((((((.....(((.....))).(((((((..(((((((((.((((..((((((...(((((..(((((.........)))))..(((((....(((((((((.......).)))..........))))).....))))).)))))..)))))).)))))).)))))))..)))))))))))))))........((((......((((((........))))))))))...))))))))....))))))....((((((((.(.(.((((.((....((((....((((((((.....((((.((.(..........).)).))))..))))))))....))))...)))))).).).)))))))).))))))).. (-206.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAACGGAUUAGCGCAUCACAAAUCGUCUAAUAAUUACGCAGAAAAUUAAGUCGCCACAAAAUGAAAAGGGGAAACCAUGUCACUUUCUGAUUUAUUAACACGAUCGACAUCCCAUGCGCUAUUAAGAUCCCGAGAGAUGGCUCAUCUGCUUACCAUUUAAGGAUAUGAUAUUUAUCAGCAUAAAGUACGGCAGGUUUACUAUCUUUCAUUUAACGCUAUAUUUUGCUAUCAUUAGCGCAAUUUGGGGCUGAUUCUGGAUUCGACGGGAUUAGCGAAGCCCGAAGUGCACGUCGAGGUGCGGUAGGCCUCGUAAAUAAACCGCAAAAAAAUAGUCGCAAACGACGAACAAUACGCUUUAGCAGCUUAAUAACCUGCCUUUAGCCUUCGCUCCCCAGCUUCCGCUCGUAAGACGGGGAUAAAGCGGAGUCAAACCAAAACGAGCUCGUGUGGAAGCCACCGUUUGAGGAUCGAAGCAUUAAAUUAAAUCAAACUAGCUUAAUUGUCGCGUGUCCGUCCGCAGGAUUAAGUGAAUUUAAAGACCGGACUAAACGUGUAGUGCUAACGGCAGAGGAAUUUCGGACGGGGGUUCAACUCCCCCCAGCUCCACCAAAACAUAGUCCAAAGCAAACUUUACAAAACCUAAAAGCCCUUGAAAAUAUUAACCUCAAGGGCUUUUUUAUUUCCUAAGCGUUCCUA ......((((((((((((.....(((((.((((((.....((((((.....((....))....(((....((....))...))).))))))..))))))..))))).........))))))).....))))).(((((((((...((((((((((........((((.......))))........))).)))))))...)))))))))....((((((....((((((....(((((((..((((((((((((((((.......))))))))))....)))))).(((((((((((((.......))))))........(((..........((((....))))..........((((((..(((((((..(((((.....(.(((((((((((..(((.(....).)))..)))))....)))))).)........(((..(.((((...((((....((((((.(((...........)))...))))))..))))......)))).)..)))..))))))))))))....))))))..))).....)))))))))))))).))))))((((....(((((((((........))))).).)))....................................((((((((((((...........))))))))))))....))))..)))))).... (-197.53) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 431 140 95 218 164 aact:AA02949|5end_hypothetical_protein_2061944..2062174_POSITIVE 399 426 387 231 179 aact:AA00333|5end_1-phosphofructokinase;_tagatose-6-phosphate_kinase_225543..225773_POSITIVE 394 323 281 55 4 aact:AA02477|5end_PTS_system,_N-acetylglucosamine-permease_IIABC_component_1712989..1713219_POSITIVE 394 134 93 213 170 aact:AA01286|5end_5,10-methylenetetrahydrofolate_dehydrogenase_(bifunctional_protein)_870309..870539_POSITIVE 392 337 292 47 5 aact:AA02609|5end_ABC_transporter,_ATP-binding_protein/permease_1818446..1818676_POSITIVE 383 347 303 82 35 aact:AA00047|5end_formate_dependent_nitrite_reductase,_cytochrome_c552_36753..36983_POSITIVE 380 326 281 112 71 aact:AA02544|5end_ATP-dependent_RNA_helicase_1773317..1773547_POSITIVE 380 326 282 65 6 aact:AA01297|5end_competence_protein_E_precursor_879125..879355_POSITIVE 376 137 95 228 188 aact:AA02415|5end_hypothetical_protein_1658443..1658673_POSITIVE 375 120 72 230 183 aact:AA01543|5end_hypothetical_protein_1034175..1034405_POSITIVE 372 338 292 67 22 aact:AA01048|5end_iron_binding_protein_afuA,_periplasmic_protein_729422..729652_POSITIVE 370 459 415 228 181 aact:AA01561|5end_conserved_hypothetical_protein_1046505..1046735_POSITIVE 370 140 92 221 161 aact:AA01379|5end_glycerophosphoryl_diester_phosphodiesterase_(protein_D)_933029..933259_POSITIVE 364 134 91 55 12 aact:AA01715|5end_conserved_hypothetical_protein_1160480..1160710_POSITIVE 362 140 92 185 123 aact:AA00729|5end_possible_hemolysin_(TlyC-like)_500204..500434_POSITIVE 359 120 78 44 5 aact:AA02425|5end_glutamate-1-semialdehyde_aminotransferase_1670301..1670531_POSITIVE 356 265 222 150 99 aact:AA01753|5end_conserved_hypothetical_protein_1185322..1185552_POSITIVE 355 420 372 224 156 aact:AA00753|5end_galactoside_ABC_transporter,_permease_protein_517528..517758_POSITIVE 352 450 402 171 123 aact:AA00887|5end_hypothetical_protein_616739..616969_POSITIVE 350 298 252 206 159 aact:AA00161|5end_pilin_B_biogenesis_protein;_fimbrial_transcription_regulation_113384..113614_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 447 428 387 81 38 aact:AA01357|3end_5-formyltetrahydrofolate_cyclo-ligase-family_protein_919785..919935_POSITIVE 431 140 95 68 14 aact:AA02947|3end_riboflavin_biosynthesis_protein_2061874..2062024_POSITIVE 410 330 281 110 63 aact:AA02601|3end_ATP-dependent_helicase_1813309..1813459_POSITIVE 394 134 93 118 75 aact:AA01284|3end_heat_shock_protein_(hsp60)_870294..870444_POSITIVE 388 338 292 42 4 aact:AA00449|3end_conserved_hypothetical_protein_313909..314059_POSITIVE 385 309 261 52 4 aact:AA01260|3end_hypothetical_protein_855758..855908_POSITIVE 380 326 281 149 108 aact:AA02543|3end_conserved_hypothetical_protein_1773434..1773584_POSITIVE 376 425 382 108 59 aact:AA02697|3end_hydrogenase_3_maturation_protease_1880408..1880558_POSITIVE 371 326 283 134 83 aact:AA02562|3end_adenine_specific_methylase_1785146..1785296_POSITIVE 370 459 415 148 101 aact:AA01559|3end_RecA_regulatory_protein,_RecX_1046505..1046655_POSITIVE 356 265 222 140 89 aact:AA01751|3end_conserved_hypothetical_protein_1185392..1185542_POSITIVE 353 440 392 141 87 aact:AA02160|3end_conserved_hypothetical_protein_1478929..1479079_POSITIVE 353 160 113 126 67 aact:AA01690|3end_penicillin-binding_protein_1C_1149142..1149292_POSITIVE 345 600 553 149 108 aact:AA00330|3end_conserved_hypothetical_protein_223976..224126_POSITIVE 344 424 387 53 11 aact:AA00961|3end_conserved_hypothetical_protein_671134..671284_POSITIVE 343 310 261 131 71 aact:AA01756|3end_cobalt_membrane_transport_protein_1187217..1187367_POSITIVE 342 326 281 134 77 aact:AA02545|3end_conserved_hypothetical_protein_1774221..1774371_POSITIVE 342 434 397 148 112 aact:AA02402|3end_O-sialoglycoprotein_endopeptidase_1652442..1652592_POSITIVE 342 437 397 130 94 aact:AA01062|3end_ribonuclease_PH_(RNase_PH)_736499..736649_POSITIVE 342 340 292 71 14 aact:AA00776|3end_conserved_hypothetical_protein_533869..534019_POSITIVE