Origin IGS: taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttgtcatactcccgattggataatgcacaacgcgatgaacaacgatcaaacgaataaattacagacaacaacgaaagggcggtcgtttttacgcgtgttttttaacgacaaaaagctaacgacaaaaaagtgagctgtaatagatgaatcttttgcaaattttcgtttggcgaaaaagatgccgaaaaagagaaaggtaaaagatacttacccgcgaaactatcgccgataagtgagacgggcgatagttacagtgaaaactccgttcggtatcgactgtgactgtccaaagtgtgtgtcctcttgttactaaatcgcgcgcaatgttacgcctgaacgcctgattcgtcaaggcgttatgctttgaaaaatcaaattggcttctctacaacaagccctcctaacgaaacctttcagacataggacaatactatggaatttaatgcacaaccaccaaagccggcacgctattttttgtacggactttagacaggttgaattgaattttcgaaataagcataaggtgggtttgataatcctctaaaaaacaccggaaaaaccgactgcacaacaagcaacgcttttaaacgtcggctatgccgacggcccaaaaggggaacaaccaagccggccttgattatgagcactttttta Mask Tandem Repeat Region ================================================ taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Find is-nt database================================================ Query_seq: AA01342:AA01344|AA01342:AA01344:conserved hypotheticl protein (possible ribosomal RNA adenine dimethylase):magnesium and cobalt transport protein:->->:911146..911800 655 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01342:AA01344|AA01342:AA01344:conserved hypotheticl protein (possible ribosomal RNA adenine dimethylase):magnesium and cobalt transport protein:->->:911146..911800 655 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01342:AA01344|AA01342:AA01344:conserved hypotheticl protein (possible ribosomal RNA adenine dimethylase):magnesium and cobalt transport protein:->->:911146..911800 655 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 8 End: 166 ....... M L I I K A G L V V P L L G R R H S R R L K A L L V V Q S V F P V F F R G L S N P P Y A Y F E N S I Q P V ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 81 End: 212 ................................................................................ M L C S R F F R C F L E D Y Q T H L M L I S K I Q F N L S K V R T K N S V P A L V V V H ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 118 End: 303 ..................................................................................................................... M I K P T L C L F R K F N S T C L K S V Q K I A C R L W W L C I K F H S I V L C L K G F V R R A C C R E A N L I F Q S I ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 303 End: 536 .............................................................................................................................................................................................................................................................................................................. M T N Q A F R R N I A R D L V T R G H T L W T V T V D T E R S F H C N Y R P S H L S A I V S R V S I F Y L S L F R H L F ....................................................................................................................... Protein_Len: 42 Strand: + Start: 425 End: 550 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ M G D S F A G K Y L L P F S F S A S F S P N E N L Q K I H L L Q L T F L S L A F C R ......................................................................................................... Protein_Len: 44 Strand: + Start: 475 End: 606 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F F A K R K F A K D S S I T A H F F V V S F L S L K N T R K N D R P F V V V C N L F V ................................................. Protein_Len: 37 Strand: - Start: 525 End: 635 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K T T L K K D N F F V R L F S R G K T T T Q L K N T Q D N N M A N H M M .................... Protein_Len: 30 Strand: - Start: 426 End: 515 ......................................................................................................................................................................................................................................................................................................................................................................................................................................... R R Y N R P Y T D K V K R K K P M K K A L R F N A F S E D M ............................................................................................................................................ Protein_Len: 44 Strand: - Start: 376 End: 507 ....................................................................................................................................................................................................................................................................................................................................................................................... L R Y R V S N E S Y S D G T E S I P S L K A P L Y R K G K E K E A D K E G F S F K C F M .................................................................................................................................................... Protein_Len: 57 Strand: - Start: 114 End: 284 ................................................................................................................. L I I L G V K H K N R F N L E V Q R F D T C F I A H R S Q H N H M L N W L I T R H R F P K T L L A Q Q L S A L K M ................................................................................................................................................................................................................................................................................................................................................................................... taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 302 End: 331 .............................................................................................................................................................................................................................................................................................................CTTGACGAATCAGGCGTTCAGGCGTAACAT.................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 263 End: 292 ......................................................................................................................................................................................................................................................................TTTGAAAAATCAAATTGGCTTCTCTACAAC........................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 42 HP_score: -3.4 Tail_Score: -2.59323 Start: 19 End: 31 Full_Region: caaaaggggaacaac caag ccggc cttg attatgagcactttt ..................caagccggccttg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 73 HP_score: -8.5 Tail_Score: -3.58208 Start: 39 End: 76 Full_Region: CCGGCTTGGTTGTTC CCCTTTTGGGCCGTCGGC ATA GCCGACGTTTAAAAGCG TTGCTTGTTGTGCAG ......................................CCCTTTTGGGCCGTCGGCATAGCCGACGTTTAAAAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -13.7 Tail_Score: -3.55801 Start: 50 End: 66 Full_Region: GTTCCCCTTTTGGGC CGTCGGC ATA GCCGACG TTTAAAAGCGTTGCT .................................................CGTCGGCATAGCCGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 57 HP_score: -5.3 Tail_Score: -3.55761 Start: 407 End: 435 Full_Region: GAGTTTTCACTGTAA CTATCGCCCGT CTCACTT ATCGGCGATAG TTTCGCGGGTAAGTA ......................................................................................................................................................................................................................................................................................................................................................................................................................CTATCGCCCGTCTCACTTATCGGCGATAG............................................................................................................................................................................................................................ TransTerm Strand: + Conf: 59 HP_score: -4.7 Tail_Score: -3.79633 Start: 420 End: 450 Full_Region: AACTATCGCCCGTCT CACTTATCGGCGA TAGTT TCGCGGGTAAGTA TCTTTTACCTTTCTC ...................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTATCGGCGATAGTTTCGCGGGTAAGTA............................................................................................................................................................................................................. TransTerm Strand: + Conf: 66 HP_score: -7.3 Tail_Score: -3.46399 Start: 422 End: 448 Full_Region: CTATCGCCCGTCTCA CTTATCGGCGA TAGTT TCGCGGGTAAG TATCTTTTACCTTTC .....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCGGCGATAGTTTCGCGGGTAAG............................................................................................................................................................................................................... TransTerm Strand: + Conf: 63 HP_score: -3.0 Tail_Score: -4.55887 Start: 443 End: 459 Full_Region: GGCGATAGTTTCGCG GGTAAG TATCT TTTACC TTTCTCTTTTTCGGC ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGTATCTTTTACC.................................................................................................................................................................................................... Find igs database================================================ Query_seq: AA01342:AA01344|AA01342:AA01344:conserved hypotheticl protein (possible ribosomal RNA adenine dimethylase):magnesium and cobalt transport protein:->->:911146..911800 655 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Intra-Species Hit: Count: 1 Min: 1 Max: 655 Len: 655 Subject: aact_AA01342_AA01344|conserved hypotheticl protein (possible ribosomal RNA adenine dimethylase):magnesium and cobalt transport protein|POSITIVE:POSITIVE|[911146,911800]|655 HSP 1 e-value: 0.0 bit: 1298.0 Len: 655 Query Start:1 Query End:655 Subject Strand: POSITIVE Subject Start: 1 Subject End: 655 taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa taaaaaagtgctcataatcaaggccggcttggttgttccccttttgggccgtcggcatagccgacgtttaaaagcgttgcttgttgtgcagtcggtttttccggtgttttttagaggattatcaaacccaccttatgcttatttcgaaaattcaattcaacctgtctaaagtccgtacaaaaaatagcgtgccggctttggtggttgtgcattaaattccatagtattgtcctatgtctgaaaggtttcgttaggagggcttgttgtagagaagccaatttgatttttcaaagcataacgccttgacgaatcaggcgttcaggcgtaacattgcgcgcgatttagtaacaagaggacacacactttggacagtcacagtcgataccgaacggagttttcactgtaactatcgcccgtctcacttatcggcgatagtttcgcgggtaagtatcttttacctttctctttttcggcatctttttcgccaaacgaaaatttgcaaaagattcatctattacagctcacttttttgtcgttagctttttgtcgttaaaaaacacgcgtaaaaacgaccgccctttcgttgttgtctgtaatttattcgtttgatcgttgttcatcgcgttgtgcattatccaatcgggagtatgacaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAAAGUGCUCAUAAUCAAGGCCGGCUUGGUUGUUCCCCUUUUGGGCCGUCGGCAUAGCCGACGUUUAAAAGCGUUGCUUGUUGUGCAGUCGGUUUUUCCGGUGUUUUUUAGAGGAUUAUCAAACCCACCUUAUGCUUAUUUCGAAAAUUCAAUUCAACCUGUCUAAAGUCCGUACAAAAAAUAGCGUGCCGGCUUUGGUGGUUGUGCAUUAAAUUCCAUAGUAUUGUCCUAUGUCUGAAAGGUUUCGUUAGGAGGGCUUGUUGUAGAGAAGCCAAUUUGAUUUUUCAAAGCAUAACGCCUUGACGAAUCAGGCGUUCAGGCGUAACAUUGCGCGCGAUUUAGUAACAAGAGGACACACACUUUGGACAGUCACAGUCGAUACCGAACGGAGUUUUCACUGUAACUAUCGCCCGUCUCACUUAUCGGCGAUAGUUUCGCGGGUAAGUAUCUUUUACCUUUCUCUUUUUCGGCAUCUUUUUCGCCAAACGAAAAUUUGCAAAAGAUUCAUCUAUUACAGCUCACUUUUUUGUCGUUAGCUUUUUGUCGUUAAAAAACACGCGUAAAAACGACCGCCCUUUCGUUGUUGUCUGUAAUUUAUUCGUUUGAUCGUUGUUCAUCGCGUUGUGCAUUAUCCAAUCGGGAGUAUGACAAA ......(((((.((..((((((((((((...((((((....(((((.((((.(.((((((((((((((....)))))))...))))))).).)))).....(((....(((((((((..........))................(((.......)))......))))))).)))..)))))))))))..))))))))))))...)).))))).............(((((.(((..((((..((....((((((..(((((.((...)).)))))..))))))........(((((((((..((((((((((((((..((((((.....(((((((.(.(((((..((((((((..(((((.(((((...(((......))).)))))..(((((......(.((((((((((.((.......)).)))))))))).)..(((((((.....)))))))...((((((...(((...((((((.....))))))..)))))))))............))))).......))).))...))))))))..)))))...).))))))).(((((........)))))..)))))).........))))))))..))).)))..))))))))).....))..))))..))).))))). (-179.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUCAUACUCCCGAUUGGAUAAUGCACAACGCGAUGAACAACGAUCAAACGAAUAAAUUACAGACAACAACGAAAGGGCGGUCGUUUUUACGCGUGUUUUUUAACGACAAAAAGCUAACGACAAAAAAGUGAGCUGUAAUAGAUGAAUCUUUUGCAAAUUUUCGUUUGGCGAAAAAGAUGCCGAAAAAGAGAAAGGUAAAAGAUACUUACCCGCGAAACUAUCGCCGAUAAGUGAGACGGGCGAUAGUUACAGUGAAAACUCCGUUCGGUAUCGACUGUGACUGUCCAAAGUGUGUGUCCUCUUGUUACUAAAUCGCGCGCAAUGUUACGCCUGAACGCCUGAUUCGUCAAGGCGUUAUGCUUUGAAAAAUCAAAUUGGCUUCUCUACAACAAGCCCUCCUAACGAAACCUUUCAGACAUAGGACAAUACUAUGGAAUUUAAUGCACAACCACCAAAGCCGGCACGCUAUUUUUUGUACGGACUUUAGACAGGUUGAAUUGAAUUUUCGAAAUAAGCAUAAGGUGGGUUUGAUAAUCCUCUAAAAAACACCGGAAAAACCGACUGCACAACAAGCAACGCUUUUAAACGUCGGCUAUGCCGACGGCCCAAAAGGGGAACAACCAAGCCGGCCUUGAUUAUGAGCACUUUUUUA ..(((((((.(((((.((((............(((.((..................................(....).((((((((((((.((.((((((((((.........((((.((.........)).))))......(((..(((((((((...(((((.(((((((.......)))))))...)))))..)))))))))(((((.(.((((.....)))).).)))))(((((((((((((((((((((((.....((....))..)).))))))))))))....(((((((.................)))))))........)))))...((((((((..(((((((.....)))))))..)))))....))).)))).....(((((((.(((................(((((.......))))).......((((.(((((.(.(((((((..(((........))).))).)))).)...)))))..((((....)))).....)))).))).)))))))...)))...)))))))))))).))))).)))))))........)).))).......(((((((...))))))).(((....)))......))))..)))....)).))))).))........ (-180.63) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 766 70 21 161 110 aact:AA01079|5end_conserved_hypothetical_protein_747404..747634_POSITIVE 687 80 33 146 96 aact:AA00240|5end_hypothetical_protein_171390..171620_POSITIVE 607 79 33 188 139 aact:AA00054|5end_cytochrome_c_biogenesis_protein_41393..41623_POSITIVE 578 79 33 211 161 aact:AA02220|5end_ABC_transport_system_permease_protein_1511155..1511385_POSITIVE 565 79 33 67 17 aact:AA01953|5end_hypothetical_protein_1320132..1320362_POSITIVE 479 79 31 201 150 aact:AA01502|5end_serine_acetyltransferase_1010014..1010244_POSITIVE 440 338 293 61 21 aact:AA01270|5end_hydrolase_(possible_2-haloalkanoic_acid_dehalogenase_I)_863317..863547_POSITIVE 406 210 161 79 26 aact:AA00409|5end_methionyl-tRNA_formyltransferase_273611..273841_POSITIVE 405 66 24 179 142 aact:AA02002|5end_hypothetical_protein_1360196..1360426_POSITIVE 405 78 33 227 174 aact:AA01936|5end_tyrosyl-tRNA_synthetase_1307043..1307273_POSITIVE 398 444 401 131 84 aact:AA00531|5end_DNA_polymerase_I_362621..362851_POSITIVE 397 580 531 220 173 aact:AA01424|5end_threonine_deaminase_(dehydratase)_957740..957970_POSITIVE 396 89 44 206 155 aact:AA02688|5end_hydrogenase_4_component_E_1873977..1874207_POSITIVE 390 57 15 230 178 aact:AA00516|5end_autoinducer-2_production_protein_355931..356161_POSITIVE 388 64 21 180 136 aact:AA02466|5end_N-acetylneuraminate_lyase_1704963..1705193_POSITIVE 387 337 292 176 139 aact:AA01183|5end_conserved_hypothetical_protein_810442..810672_POSITIVE 386 68 22 231 193 aact:AA01525|5end_amino_acid_ABC_transporter,_permease_component_1024277..1024507_POSITIVE 382 64 23 48 12 aact:AA01019|5end_conserved_hypothetical_protein_712223..712453_POSITIVE 373 65 22 191 121 aact:AA01566|5end_conserved_hypothetical_protein_1051811..1052041_POSITIVE 373 65 22 191 121 aact:AA01261|5end_conserved_hypothetical_protein_856443..856673_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 766 70 21 130 79 aact:AA01078|3end_transcriptional_regulator_(probable_MerR_family)_747453..747603_POSITIVE 687 80 33 94 44 aact:AA00239|3end_hypothetical_protein_171418..171568_POSITIVE 580 73 33 61 19 aact:AA00093|3end_L-serine_dehydratase_(L-serine_deaminase)_71173..71323_POSITIVE 553 80 39 46 3 aact:AA01167|3end_glucose-6-phosphate_1-dehydrogenase_801067..801217_POSITIVE 479 79 31 147 96 aact:AA01501|3end_hypothetical_protein_1010040..1010190_POSITIVE 440 338 293 77 37 aact:AA01269|3end_hypothetical_protein_863413..863563_POSITIVE 430 78 33 53 6 aact:AA01880|3end_N-acetylglucosamine_repressor_1268383..1268533_POSITIVE 406 210 161 76 23 aact:AA00408|3end_SUN_protein_(FMU_protein)_273688..273838_POSITIVE 405 66 24 142 105 aact:AA02001|3end_conserved_hypothetical_protein_1360239..1360389_POSITIVE 405 78 33 97 44 aact:AA01934|3end_conserved_hypothetical_protein_1306993..1307143_POSITIVE 398 444 401 98 51 aact:AA00530|3end_hypothetical_protein_362668..362818_POSITIVE 397 580 531 80 33 aact:AA01423|3end_cell_division_protein_X,_ABC_system_permease_957680..957830_POSITIVE 390 57 15 57 5 aact:AA00514|3end_hypothetical_protein_355838..355988_POSITIVE 382 64 23 45 9 aact:AA01018|3end_conserved_hypothetical_protein_(possible_transcriptional_regulator)_712300..712450_POSITIVE 380 90 41 82 17 aact:AA01342|3end_conserved_hypotheticl_protein_(possible_ribosomal_RNA_adenine_dimethylase)_911085..911235_POSITIVE 375 54 23 151 119 aact:AA02548|3end_desulfoviridin_gamma_subunit_1775849..1775999_POSITIVE 370 64 26 81 42 aact:AA00324|3end_tRNA_(Uracil-5-)-methyltransferase_(tRNA(M-5-U54)-methyltransferase)_221321..221471_POSITIVE 361 110 61 117 68 aact:AA02135|3end_hypothetical_protein_1459067..1459217_POSITIVE 361 110 61 133 84 aact:AA02135.1|3end_hypothetical_protein_1459083..1459233_POSITIVE 361 89 47 150 111 aact:AA01765|3end_Mu-like_prophage_FluMu_transposase_A_1192636..1192786_POSITIVE