Origin IGS: taactatttcaatgctttcactggcatggacttcctacttaagggaaagtttatcacttaaatacggttcggtagtatcaatgccttaccaatatattgccgtagcaatagccggattaggaatggtatttactctggggttagacttatcccagatcaaaattattttcagtagcccgcttttaattgctttattgatctttcttggaatgggtatttccggcggtagttatttaatccagctttactctttcaaacatcatataggtgtagaaaattcaacaatgacattaaatttaatgccattattaggatatgtaacgtaatcataacattaggtgaagaaatggtacttagcaaaacaatcattgtcacaatcatagtaattgcattgtatgttttcactcagtatggcgataaaggagagaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcaccttttcaatttgctgtggagtagctttccttcgttggcaaattgtacttttccgtttttgtccagcacgacgattaaactttctttagattgtaattgccaggtgtttttacttgccccgtttgatcaagaatgatttggctatgtagaaattgttttttgctttttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaaaagcaaaaaacaatttctacatagccaaatcattcttgatcaaacggggcaagtaaaaacacctggcaattacaatctaaagaaagtttaatcgtcgtgctggacaaaaacggaaaagtacaatttgccaacgaaggaaagctactccacagcaaattgaaaaggtgatgaatcgatttatgattgattttggtgatctcctagacgaccaccgttaagttgaaataggtgtttacacagaatttgggatagggtccaactcttttgtctactatagccggaaaatgcttaaaaaggacaaaattaccaaccatttttctactataccttagaaaatattaggaaaacctggtatttgacatttaataagatagtaatatgcagggttttacttatagataaatttttctcctttatgttagttctctcctttatcgccatactgagtgaaaacatacaatgcaattactatgattgtgacaatgattgttttgctaagtaccatttcttcacctaatgttatgattacgttacatatcctaataatggcattaaatttaatgtcattgttgaattttctacacctatatgatgtttgaaagagtaaagctggattaaataactaccgccggaaatacccattccaagaaagatcaataaagcaattaaaagcgggctactgaaaataattttgatctgggataagtctaaccccagagtaaataccattcctaatccggctattgctacggcaatatattggtaaggcattgatactaccgaaccgtatttaagtgataaactttcccttaagtaggaagtccatgccagtgaaagcattgaaatagtta Mask Tandem Repeat Region ================================================ taactatttcaatgctttcactggcatggacttcctacttaagggaaagtttatcacttaaatacggttcggtagtatcaatgccttaccaatatattgccgtagcaatagccggattaggaatggtatttactctggggttagacttatcccagatcaaaattattttcagtagcccgcttttaattgctttattgatctttcttggaatgggtatttccggcggtagttatttaatccagctttactctttcaaacatcatataggtgtagaaaattcaacaatgacattaaatttaatgccattattaggatatgtaacgtaatcataacattaggtgaagaaatggtacttagcaaaacaatcattgtcacaatcatagtaattgcattgtatgttttcactcagtatggcgataaaggagagaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcaccttttcaatttgctgtggagtagctttccttcgttggcaaattgtacttttccgtttttgtccagcacgacgattaaactttctttagattgtaattgccaggtgtttttacttgccccgtttgatcaagaatgatttggctatgtagaaattgttttttgctttttta Find is-nt database================================================ Query_seq: AA01263:AA01264|AA01263:AA01264:hypothetical protein:conserved hypothetical protein:->->:861147..862002 856 taactatttcaatgctttcactggcatggacttcctacttaagggaaagtttatcacttaaatacggttcggtagtatcaatgccttaccaatatattgccgtagcaatagccggattaggaatggtatttactctggggttagacttatcccagatcaaaattattttcagtagcccgcttttaattgctttattgatctttcttggaatgggtatttccggcggtagttatttaatccagctttactctttcaaacatcatataggtgtagaaaattcaacaatgacattaaatttaatgccattattaggatatgtaacgtaatcataacattaggtgaagaaatggtacttagcaaaacaatcattgtcacaatcatagtaattgcattgtatgttttcactcagtatggcgataaaggagagaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcaccttttcaatttgctgtggagtagctttccttcgttggcaaattgtacttttccgtttttgtccagcacgacgattaaactttctttagattgtaattgccaggtgtttttacttgccccgtttgatcaagaatgatttggctatgtagaaattgttttttgctttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01263:AA01264|AA01263:AA01264:hypothetical protein:conserved hypothetical protein:->->:861147..862002 856 taactatttcaatgctttcactggcatggacttcctacttaagggaaagtttatcacttaaatacggttcggtagtatcaatgccttaccaatatattgccgtagcaatagccggattaggaatggtatttactctggggttagacttatcccagatcaaaattattttcagtagcccgcttttaattgctttattgatctttcttggaatgggtatttccggcggtagttatttaatccagctttactctttcaaacatcatataggtgtagaaaattcaacaatgacattaaatttaatgccattattaggatatgtaacgtaatcataacattaggtgaagaaatggtacttagcaaaacaatcattgtcacaatcatagtaattgcattgtatgttttcactcagtatggcgataaaggagagaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcaccttttcaatttgctgtggagtagctttccttcgttggcaaattgtacttttccgtttttgtccagcacgacgattaaactttctttagattgtaattgccaggtgtttttacttgccccgtttgatcaagaatgatttggctatgtagaaattgttttttgctttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01263:AA01264|AA01263:AA01264:hypothetical protein:conserved hypothetical protein:->->:861147..862002 856 taactatttcaatgctttcactggcatggacttcctacttaagggaaagtttatcacttaaatacggttcggtagtatcaatgccttaccaatatattgccgtagcaatagccggattaggaatggtatttactctggggttagacttatcccagatcaaaattattttcagtagcccgcttttaattgctttattgatctttcttggaatgggtatttccggcggtagttatttaatccagctttactctttcaaacatcatataggtgtagaaaattcaacaatgacattaaatttaatgccattattaggatatgtaacgtaatcataacattaggtgaagaaatggtacttagcaaaacaatcattgtcacaatcatagtaattgcattgtatgttttcactcagtatggcgataaaggagagaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcaccttttcaatttgctgtggagtagctttccttcgttggcaaattgtacttttccgtttttgtccagcacgacgattaaactttctttagattgtaattgccaggtgtttttacttgccccgtttgatcaagaatgatttggctatgtagaaattgttttttgctttttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 9 Min: 3 Max: 853 Len: 851 Subject: UniRef90_A3UPX4 Cluster: Transporter, Drug/Metabolite Exporter family; n=1; Vibrio splendidus 12B01|Rep: Transporter, Drug/Metabolite Exporter family - Vibrio splendidus 12B01 HSP 1 e-value: 2.0E-43 bit: 153.0 Len: 318 Query Start:3 Query End:320 Subject Strand: null Subject Start: 173 Subject End: 277 .. T I S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .. T C S M L A L A W T A H L R A S L A D K Y G S V V S M L Y Q Y I S V A V M G I I V V L T M G L D L S Q I Y I I F S S P L L I A L L I F L G T G I S G G S Y L I Q L Y S F K - R I G V E K A T M A L N L M P L V G Y L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-43 bit: 46.6 Len: 102 Query Start:326 Query End:427 Subject Strand: null Subject Start: 280 Subject End: 313 ..................................................................................................................................................................................................................................................................................................................................... I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K G E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................... V V T L G E Q M A M G K T I V V S L I V V A L Y V F T K F E T K Q E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1ZB26 Cluster: Hypothetical protein; n=1; Photobacterium profundum 3TCK|Rep: Hypothetical protein - Photobacterium profundum 3TCK HSP 1 e-value: 2.0E-42 bit: 148.0 Len: 318 Query Start:3 Query End:320 Subject Strand: null Subject Start: 173 Subject End: 277 .. T I S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .. T C S M L A L A W T A H L R A S L A D K Y G S V V S M L Y Q Y I S V A A L G I V M V F V L D L D L S Q I N I I L S S P L L I G L L I F L G T G I S G G S Y L V Q L Y S F K - R I G V E K A T M A L N L M P L V G Y L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-42 bit: 48.1 Len: 96 Query Start:326 Query End:421 Subject Strand: null Subject Start: 280 Subject End: 311 ..................................................................................................................................................................................................................................................................................................................................... I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K ................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................... V M T L G E E M V L G K T I V V S L I V V A L Y V F T K F E T K ................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0J2G6 Cluster: Hypothetical protein; n=1; Shewanella woodyi ATCC 51908|Rep: Hypothetical protein - Shewanella woodyi ATCC 51908 HSP 1 e-value: 4.0E-41 bit: 146.0 Len: 318 Query Start:3 Query End:320 Subject Strand: null Subject Start: 173 Subject End: 277 .. T I S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .. T C S M L S L A W T A H L R A S L A E K Y G S V V S M L Y Q Y I S V A V M G I I V V V A M D L D L S Q I N I I L A N P L L L G L L I F L G M G I S G G S Y L I Q L Y S F K - K I G V E K A T M A L N L M P L V G Y I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-41 bit: 46.2 Len: 102 Query Start:326 Query End:427 Subject Strand: null Subject Start: 280 Subject End: 313 ..................................................................................................................................................................................................................................................................................................................................... I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K G E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................... V L T L G E Q L H L S K T I I V S L I V V A L Y V F T K F E A K P E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A0X1Q1 Cluster: Hypothetical protein; n=1; Shewanella pealeana ATCC 700345|Rep: Hypothetical protein - Shewanella pealeana ATCC 700345 HSP 1 e-value: 5.0E-41 bit: 147.0 Len: 318 Query Start:3 Query End:320 Subject Strand: null Subject Start: 173 Subject End: 277 .. T I S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .. T C S M L S L A W T A H L R A S L A D K Y G S V V S M L Y Q Y I S V A V T G F F V V M A M G L D L S Q I F I I L D S P L L L G L L I F L G T G I S G G S Y L I Q L Y S F K - R I G V E K A T M A L N L M P L V G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 5.0E-41 bit: 45.1 Len: 102 Query Start:326 Query End:427 Subject Strand: null Subject Start: 280 Subject End: 313 ..................................................................................................................................................................................................................................................................................................................................... I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K G E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................... V L T L G E Q M E L S K T I I V S L I V V A L Y M F T K C E T K P E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1ZB25 Cluster: Hypothetical protein; n=1; Photobacterium profundum 3TCK|Rep: Hypothetical protein - Photobacterium profundum 3TCK HSP 1 e-value: 3.0E-14 bit: 81.6 Len: 312 Query Start:9 Query End:320 Subject Strand: null Subject Start: 170 Subject End: 272 ........ S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A - G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........ S A A S F A C T A Y A R A E L A E K Y G S V A T M F H Q F V F A S I G F G F Y L M F S - G A D F S S A L G I F S S P L R I L C I V I L G V G I S G T S Y L V Y I Y A M E - R V G V D G T G M A L N L M P L S S F V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_A0X0R0 Cluster: Hypothetical protein; n=2; Shewanella|Rep: Hypothetical protein - Shewanella pealeana ATCC 700345 HSP 1 e-value: 5.0E-14 bit: 77.0 Len: 312 Query Start:9 Query End:320 Subject Strand: null Subject Start: 170 Subject End: 272 ........ S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M - V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........ S A A S F A C M A Y A R A K L A D K Y G S V A T M F H Q F V F A S L - G F G L Y L F V V G A D F S S A L N V F S S P L R I L C I V I L G V C I S G M S Y L V Y I Y G M E - R V G V D G T G M A L N L M P L S S F I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 5.0E-14 bit: 24.3 Len: 102 Query Start:326 Query End:427 Subject Strand: null Subject Start: 275 Subject End: 308 ..................................................................................................................................................................................................................................................................................................................................... I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K G E ............................................................................................................................................................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................... V F A L G E Q V T P M R L V A I A V V I T S M I A F M K L G N K N K ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A3UPX3 Cluster: Hypothetical protein; n=1; Vibrio splendidus 12B01|Rep: Hypothetical protein - Vibrio splendidus 12B01 HSP 1 e-value: 3.0E-7 bit: 58.5 Len: 312 Query Start:6 Query End:317 Subject Strand: null Subject Start: 172 Subject End: 274 ..... I S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L I A L L I F L G M G I S G G S Y L I Q L Y S F K H H I G V E N S T M T L N L M P L L G Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..... L S V L S F A S V T H L R A H L A E K Y G A T R T M H Y Q F G F A A V G F F I Y L L V S G I D V P S L L L V M R P S W S L L C I M V L G G F V S G L G Y I A Y I Y G I E - R V G V E G S S M A L N L I P M S A F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3N171 Cluster: Hypothetical protein; n=2; Actinobacillus pleuropneumoniae|Rep: Hypothetical protein - Actinobacillus pleuropneumoniae serotype 5b (strain L20) HSP 1 e-value: 1.0E-6 bit: 51.2 Len: 123 Query Start:687 Query End:809 Subject Strand: null Subject Start: 135 Subject End: 175 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N G A S K N T W Q L Q S K E S L I V V L D K N G K V Q F A N E G K L L H S K L K R ............................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N G S V K N A W G L K S K D S F I A V L D K S G K V Q F V A E G K L S A A Q I Q Q ............................................... HSP 2 e-value: 1.0E-6 bit: 25.0 Len: 39 Query Start:794 Query End:832 Subject Strand: null Subject Start: 127 Subject End: 139 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H S Q I I L D Q T G Q V K ........................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H S Q V V L D Q N G S V K ........................ Subject: UniRef90_Q9CP94 Cluster: Hypothetical protein PM0159; n=1; Pasteurella multocida|Rep: Hypothetical protein PM0159 - Pasteurella multocida HSP 1 e-value: 2.0E-6 bit: 47.4 Len: 99 Query Start:708 Query End:806 Subject Strand: null Subject Start: 135 Subject End: 167 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G A S K N T W Q L Q S K E S L I V V L D K N G K V Q F A N E G K L .................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G A V K A A W Q L K E K E S L V V V L D K A G K V K F V H E G A L .................................................. HSP 2 e-value: 2.0E-6 bit: 28.1 Len: 60 Query Start:794 Query End:853 Subject Strand: null Subject Start: 119 Subject End: 138 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K S K K Q F L H S Q I I L D Q T G Q V K ... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K G K K A N A H S Q V V L D Q R G A V K ... tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 62 End: 172 ............................................................. M R F G S I N A L P I Y C R S N S R I R N G I Y S G V R L I P D Q N Y F Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 6 End: 323 ..... M S M L S L A W T S Y L R E S L S L K Y G S V V S M P Y Q Y I A V A I A G L G M V F T L G L D L S Q I K I I F S S P L L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 290 End: 430 ................................................................................................................................................................................................................................................................................................. M K F N A I I R I C N V I I T L G E E M V L S K T I I V T I I V I A L Y V F T Q Y G D K G E N .......................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 387 End: 527 .................................................................................................................................................................................................................................................................................................................................................................................................. M H C M F S L S M A I K E R T N I K E K N L S I S K T L H I T I L L N V K Y Q V F L I F S K V ......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 538 End: 648 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V G N F V L F K H F P A I V D K R V G P Y P K F C V N T Y F N L T V V V ................................................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 668 End: 772 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I N R F I T F S I C C G V A F L R W Q I V L F R F C P A R R L N F L .................................................................................... Protein_Len: 55 Strand: + Start: 655 End: 819 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M T K I N H K S I H H L F N L L W S S F P S L A N C T F P F L S S T T I K L S L D C N C Q V F L L A P F D Q E ..................................... Protein_Len: 31 Strand: - Start: 637 End: 729 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ R H D D L L D G F D I M F R N M V K E I Q Q P T A K R R Q C M ............................................................................................................................... Protein_Len: 35 Strand: - Start: 523 End: 627 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P I T S F H N T I K D K K L M K R S Y Y V F S N S G I G F E T Y V G M ..................................................................................................................................................................................................................................... Protein_Len: 59 Strand: - Start: 338 End: 514 ................................................................................................................................................................................................................................................................................................................................................. T F F H Y K A F C D N D C D Y Y N C Q I N E S L I A I F S L V L M F S F F K D I L L V R C I V I K N F T L Y W T K R M ...................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: - Start: 256 End: 405 ............................................................................................................................................................................................................................................................... V D Y L H L F N L L S M L N L A M I L I H L T I M V N P S S I T S L L V I M T V I M T I A N Y T K M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 89 End: 217 ........................................................................................ W Y I A T A I A P N P I T N V R P N S K D W I L I I K L L G S K I A K N I K R P I P M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: AA01263:AA01264|AA01263:AA01264:hypothetical protein:conserved hypothetical protein:->->:861147..862002 856 tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Intra-Species Hit: Count: 1 Min: 428 Max: 686 Len: 259 Subject: aact_AA01263_AA01264|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[861147,862002]|856 HSP 1 e-value: 1.0E-144 bit: 513.0 Len: 259 Query Start:428 Query End:686 Subject Strand: POSITIVE Subject Start: 428 Subject End: 686 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................aactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatca.......................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................aactaacataaaggagaaaaatttatctataagtaaaaccctgcatattactatcttattaaatgtcaaataccaggttttcctaatattttctaaggtatagtagaaaaatggttggtaattttgtcctttttaagcattttccggctatagtagacaaaagagttggaccctatcccaaattctgtgtaaacacctatttcaacttaacggtggtcgtctaggagatcaccaaaatcaatcataaatcgattcatca.......................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACUAACAUAAAGGAGAAAAAUUUAUCUAUAAGUAAAACCCUGCAUAUUACUAUCUUAUUAAAUGUCAAAUACCAGGUUUUCCUAAUAUUUUCUAAGGUAUAGUAGAAAAAUGGUUGGUAAUUUUGUCCUUUUUAAGCAUUUUCCGGCUAUAGUAGACAAAAGAGUUGGACCCUAUCCCAAAUUCUGUGUAAACACCUAUUUCAACUUAACGGUGGUCGUCUAGGAGAUCACCAAAAUCAAUCAUAAAUCGAUUCAUCA .............(((((.......(((((..(((......))).......(((((((..((((((........(((....))).))))))..)))))))..)))))...(((((((((..(((((((..((...(((........)))..))..)))))))((((((((................(((....)))....))))))))...(((((((........)))))))...))))))))).......))).)). (-44.85) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUGAAUCGAUUUAUGAUUGAUUUUGGUGAUCUCCUAGACGACCACCGUUAAGUUGAAAUAGGUGUUUACACAGAAUUUGGGAUAGGGUCCAACUCUUUUGUCUACUAUAGCCGGAAAAUGCUUAAAAAGGACAAAAUUACCAACCAUUUUUCUACUAUACCUUAGAAAAUAUUAGGAAAACCUGGUAUUUGACAUUUAAUAAGAUAGUAAUAUGCAGGGUUUUACUUAUAGAUAAAUUUUUCUCCUUUAUGUUAGUU .((.((((..((((((((..(((((((((((.(.((((..((((.........))))...)))).).)))).))))))).....((((..((.....((((((((.....(((........)))......))))))))................((((((...(((((((((((((((....))))))))))....)))))....)))))).......))..)))).))))))))..)))).))............... (-48.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 302 180 143 45 8 aact:AA00309|5end_3-hydroxyisobutyrate_dehydrogenase;_2-hydroxy-3-oxopropionate_reductase_209285..209515_POSITIVE 301 160 113 110 60 aact:AA02119|5end_hypothetical_protein_1446372..1446602_POSITIVE 290 157 111 216 169 aact:AA01704|5end_tyrosine-specific_transport_protein_1156170..1156400_POSITIVE 277 240 194 198 151 aact:AA01987|5end_hypothetical_protein_1350415..1350645_POSITIVE 270 189 144 224 171 aact:AA00347|5end_50S_ribosomal_protein_L11_232137..232367_POSITIVE 267 244 211 63 20 aact:AA02075|5end_conserved_hypothetical_protein_1409654..1409884_POSITIVE 266 220 171 144 96 aact:AA01753|5end_conserved_hypothetical_protein_1185322..1185552_POSITIVE 265 169 128 64 27 aact:AA01266|5end_hypothetical_protein_862076..862306_POSITIVE 262 170 122 172 115 aact:AA02663|5end_DNA_ligase_1853564..1853794_POSITIVE 252 160 111 230 176 aact:AA00317|5end_DNA_mismatch_repair_protein_215472..215702_POSITIVE 251 250 211 195 146 aact:AA02439|5end_integral_membrane_protein;_possible_ABC_transporter_permease_1683902..1684132_POSITIVE 250 235 193 46 9 aact:AA01429|5end_conserved_hypothetical_protein_959581..959811_POSITIVE 247 151 117 169 140 aact:AA01569|5end_dipeptide_transport_ATP-binding_protein_1056859..1057089_POSITIVE 243 233 192 162 116 aact:AA02145|5end_iron(III)_ABC_transporter,_ATP-binding_protein_1468602..1468832_POSITIVE 243 245 211 58 22 aact:AA00401|5end_FKBP-type_peptidyl-prolyl_cis-trans_isomerase_slyD_(PPiase)_268361..268591_POSITIVE 241 152 112 205 160 aact:AA01556|5end_ABC_transporter_ATP-binding_protein_1044218..1044448_POSITIVE 239 249 212 52 7 aact:AA02114|5end_exodeoxyribonuclease_I_1443057..1443287_POSITIVE 237 234 194 157 125 aact:AA02196|5end_oxaloacetate_decarboxylase_beta_chain_1496308..1496538_POSITIVE 235 247 211 39 4 aact:AA01457|5end_D-xylose_ABC_transporter,_membrane_spanning_protein_977604..977834_POSITIVE 234 179 136 202 170 aact:AA02415|5end_hypothetical_protein_1658443..1658673_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 290 157 111 127 80 aact:AA01703|3end_L-ribulose-phosphate_4-epimerase_1156161..1156311_POSITIVE 270 189 144 65 12 aact:AA00345|3end_transcription_antitermination_protein_232058..232208_POSITIVE 269 238 196 67 23 aact:AA02480|3end_excinuclease_ABC_subunit_B_1718442..1718592_POSITIVE 269 146 105 140 94 aact:AA01266|3end_hypothetical_protein_862251..862401_POSITIVE 269 146 105 61 15 aact:AA01265|3end_hypothetical_protein_862172..862322_POSITIVE 266 220 171 134 86 aact:AA01751|3end_conserved_hypothetical_protein_1185392..1185542_POSITIVE 262 170 122 124 67 aact:AA02662|3end_hypothetical_protein_1853596..1853746_POSITIVE 251 233 193 44 4 aact:AA00743|3end_conserved_hypothetical_protein_(possible_membrane_protein)_509947..510097_POSITIVE 250 220 172 123 74 aact:AA01357|3end_5-formyltetrahydrofolate_cyclo-ligase-family_protein_919785..919935_POSITIVE 238 148 115 149 118 aact:AA00811|3end_conserved_hypothetical_protein_558027..558177_POSITIVE 237 234 194 143 111 aact:AA02195|3end_oxaloacetate_decarboxylase_alpha_chain_1496374..1496524_POSITIVE 234 186 145 63 21 aact:AA01240|3end_30S_ribosomal_protein_S11_845341..845491_POSITIVE 230 147 112 141 96 aact:AA02715|3end_paraquat-inducible_protein_pqiB_homolog_1899787..1899937_POSITIVE 230 233 193 92 48 aact:AA01767|3end_conserved_hypothetical_protein_1192961..1193111_POSITIVE 230 231 211 50 21 aact:AA00221|3end_NADP-specific_glutamate_dehydrogenase_153865..154015_POSITIVE 229 149 112 128 92 aact:AA00543|3end_ADP-heptose--LPS_heptosyltransferase_II_372407..372557_POSITIVE 227 240 197 45 5 aact:AA02556|3end_methylglyoxal_synthase_1781007..1781157_POSITIVE 227 152 116 121 86 aact:AA01726|3end_conserved_hypothetical_protein_(possible_HipA-like_protein_1168304..1168454_POSITIVE 224 118 76 94 49 aact:AA02837|3end_conserved_hypothetical_protein_1992977..1993127_POSITIVE 224 180 145 39 4 aact:AA00316|3end_conserved_hypothetical_protein_215340..215490_POSITIVE