Origin IGS: taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttatagagaaaaacctttagatttttgagcttgttgttcctgagatttaggtttaattttagaacctacggcgttaattactcttgcttcagggcgattgacttttaattcattatctagctgtttaggcttgatagcgccagatttcaaggcttctgcggttatgcctttgctgtatatctttatgatcagcaaacccatcaagagcctttgagatctggctatcttgcttgataatttcattagcctttacaccgtttaccagagcatcataggatttttgacctaacttttcggataattctctattgaatgaaaaatctattttatagactttagattgttcaacatttaattcaaatagtgaactatttataattttttctagggatttatattctttatgatagaaaatcgcatttatttcatcttgcaatacaattctttgaataggatatgaatttttcaataaactaattgaatttacctcaaaatctcttgctaaatatatttctgttagagctgctttagactaatctaatttaaacccaacttctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagaagttgggtttaaattagattagtctaaagcagctctaacagaaatatatttagcaagagattttgaggtaaattcaattagtttattgaaaaattcatatcctattcaaagaattgtattgcaagatgaaataaatgcgattttctatcataaagaatataaatccctagaaaaaattataaatagttcactatttgaattaaatgttgaacaatctaaagtctataaaatagatttttcattcaatagagaattatccgaaaagttaggtcaaaaatcctatgatgctctggtaaacggtgtaaaggctaatgaaattatcaagcaagatagccagatctcaaaggctcttgatgggtttgctgatcataaagatatacagcaaaggcataaccgcagaagccttgaaatctggcgctatcaagcctaaacagctagataatgaattaaaagtcaatcgccctgaagcaagagtaattaacgccgtaggttctaaaattaaacctaaatctcaggaacaacaagctcaaaaatctaaaggtttttctctataaaaaatagtctaaagagcaaaaaaagagcgtagtctgtttttactctttgagaattcagcaagaaccgcagggaagcggtagttattttgctcgttttttatatctgcttattgtggctcttgatacgttgtattta Mask Tandem Repeat Region ================================================ taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttatagagaaaaacctttagatttttgagcttgttgttcctgagatttaggtttaattttagaacctacggcgttaattactcttgcttcagggcgattgacttttaattcattatctagctgtttaggcttgatagcgccagatttcaaggcttctgcggttatgcctttgctgtatatctttatgatcagcaaacccatcaagagcctttgagatctggctatcttgcttgataatttcattagcctttacaccgtttaccagagcatcataggatttttgacctaacttttcggataattctctattgaatgaaaaatctattttatagactttagattgttcaacatttaattcaaatagtgaactatttataattttttctagggatttatattctttatgatagaaaatcgcatttatttcatcttgcaatacaattctttgaataggatatgaatttttcaataaactaattgaatttacctcaaaatctcttgctaaatatatttctgttagagctgctttagactaatctaatttaaacccaacttctta Find is-nt database================================================ Query_seq: AA01132:AA01133|AA01132:AA01133:possible cell filamentation protein:conserved hypothetical protein:->->:775968..776662 695 taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttatagagaaaaacctttagatttttgagcttgttgttcctgagatttaggtttaattttagaacctacggcgttaattactcttgcttcagggcgattgacttttaattcattatctagctgtttaggcttgatagcgccagatttcaaggcttctgcggttatgcctttgctgtatatctttatgatcagcaaacccatcaagagcctttgagatctggctatcttgcttgataatttcattagcctttacaccgtttaccagagcatcataggatttttgacctaacttttcggataattctctattgaatgaaaaatctattttatagactttagattgttcaacatttaattcaaatagtgaactatttataattttttctagggatttatattctttatgatagaaaatcgcatttatttcatcttgcaatacaattctttgaataggatatgaatttttcaataaactaattgaatttacctcaaaatctcttgctaaatatatttctgttagagctgctttagactaatctaatttaaacccaacttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01132:AA01133|AA01132:AA01133:possible cell filamentation protein:conserved hypothetical protein:->->:775968..776662 695 taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttatagagaaaaacctttagatttttgagcttgttgttcctgagatttaggtttaattttagaacctacggcgttaattactcttgcttcagggcgattgacttttaattcattatctagctgtttaggcttgatagcgccagatttcaaggcttctgcggttatgcctttgctgtatatctttatgatcagcaaacccatcaagagcctttgagatctggctatcttgcttgataatttcattagcctttacaccgtttaccagagcatcataggatttttgacctaacttttcggataattctctattgaatgaaaaatctattttatagactttagattgttcaacatttaattcaaatagtgaactatttataattttttctagggatttatattctttatgatagaaaatcgcatttatttcatcttgcaatacaattctttgaataggatatgaatttttcaataaactaattgaatttacctcaaaatctcttgctaaatatatttctgttagagctgctttagactaatctaatttaaacccaacttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01132:AA01133|AA01132:AA01133:possible cell filamentation protein:conserved hypothetical protein:->->:775968..776662 695 taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttatagagaaaaacctttagatttttgagcttgttgttcctgagatttaggtttaattttagaacctacggcgttaattactcttgcttcagggcgattgacttttaattcattatctagctgtttaggcttgatagcgccagatttcaaggcttctgcggttatgcctttgctgtatatctttatgatcagcaaacccatcaagagcctttgagatctggctatcttgcttgataatttcattagcctttacaccgtttaccagagcatcataggatttttgacctaacttttcggataattctctattgaatgaaaaatctattttatagactttagattgttcaacatttaattcaaatagtgaactatttataattttttctagggatttatattctttatgatagaaaatcgcatttatttcatcttgcaatacaattctttgaataggatatgaatttttcaataaactaattgaatttacctcaaaatctcttgctaaatatatttctgttagagctgctttagactaatctaatttaaacccaacttctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 140 Max: 692 Len: 553 Subject: UniRef90_Q0I2B3 Cluster: Cell filamentation-like protein; n=1; Haemophilus somnus 129PT|Rep: Cell filamentation-like protein - Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt)) HSP 1 e-value: 2.0E-44 bit: 181.0 Len: 390 Query Start:303 Query End:692 Subject Strand: null Subject Start: 148 Subject End: 277 .............................................................................................................................................................................................................................................................................................................. E V G F K L D * S K A A L T E I Y L A R D F E V N S I S L L K N S Y P I Q R I V L Q D E I N A I F Y H K E Y K S L E K I I N S S L F E L N V E Q S K V Y K I D F S F N R E L S E K L G Q K S Y D A L V N G V K A N E I I K Q D S Q I S K A L D G F A D H K D I Q Q R ... .............................................................................................................................................................................................................................................................................................................. E A G F K L D W A K S T Q T E V Y L A R D F E V N S I S L L R A S T P T Q K M A L Q D E I D A I R Y H K E Y K P L E K I I E C S L S K L S V E Q S K V Y K I E F S F N K E L S E K I G K K S Y D V L V N G I K S D V L L K R D N Q L S K A L E G L A N H K D L R E K ... HSP 2 e-value: 4.0E-11 bit: 70.9 Len: 243 Query Start:140 Query End:382 Subject Strand: null Subject Start: 254 Subject End: 332 ........................................................................................................................................... L M K L S S K I A R S Q R L L M G L L I I K - I Y S K G I T A E A L K S G A I K P K Q L D N E L K V N R P E A R V I N A V G S K I K P K S Q E Q Q A Q K S K G F S L ......................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................... L L K R D N Q L S K A - - - L E G L A N H K D L R E K G I S A E S L K S G T I Q P L M L P N E F K V N R P E N R K I D A L G S K I E S K S T S D L Q K K S K G F S L ......................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8VRE7 Cluster: Hypothetical protein; n=1; Haemophilus influenzae biotype aegyptius|Rep: Hypothetical protein - Haemophilus influenzae biotype aegyptius HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 267 Query Start:303 Query End:569 Subject Strand: null Subject Start: 166 Subject End: 256 .............................................................................................................................................................................................................................................................................................................. Q D E I N A - I F Y H K - E Y K S L E K I I N S S L F E L N V E Q S K V Y K I D F S F N R E L S E K L G Q K S Y D A L V N G V K A N E I I K Q D S Q I S K A L D G F A D H K D I Q Q R .............................................................................................................................. .............................................................................................................................................................................................................................................................................................................. E E M I N A S I Q A H R C D Y K G L E S I I E K G L T P L S L N S E K E Y K I D F S F N K E E S E K L G Q K S Y D V L V N G V R A D N L L K K D S Q L S K A L E G L A T H K D I Q Q K .............................................................................................................................. HSP 2 e-value: 1.0E-17 bit: 92.4 Len: 243 Query Start:140 Query End:382 Subject Strand: null Subject Start: 233 Subject End: 311 ........................................................................................................................................... L M K L S S K I A R S Q R L L M G L L I I K - I Y S K G I T A E A L K S G A I K P K Q L D N E L K V N R P E A R V I N A V G S K I K P K S Q E Q Q A Q K S K G F S L ......................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................... L L K K D S Q L S K A - - - L E G L A T H K D I Q Q K G I T A E A L K S G I I Q P L M L N N E F K V N R P E A R T I N A I G S K I E P K M Q E L Q A Q K T K G F S L ......................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q4L0U9 Cluster: Fic-1 cell filamentation-like protein; n=1; Haemophilus influenzae biotype aegyptius|Rep: Fic-1 cell filamentation-like protein - Haemophilus influenzae biotype aegyptius HSP 1 e-value: 3.0E-20 bit: 101.0 Len: 267 Query Start:303 Query End:569 Subject Strand: null Subject Start: 174 Subject End: 264 .............................................................................................................................................................................................................................................................................................................. Q D E I N A - I F Y H K - E Y K S L E K I I N S S L F E L N V E Q S K V Y K I D F S F N R E L S E K L G Q K S Y D A L V N G V K A N E I I K Q D S Q I S K A L D G F A D H K D I Q Q R .............................................................................................................................. .............................................................................................................................................................................................................................................................................................................. E E M I N A S I Q A H R C D Y K G L E S I I E K G L T P L S L N S E N E Y K I D F S F N K E E S E K L G Q K S Y D V L V N G V R A D N L L K K D S Q L S M A L E G L A T H K D I Q Q K .............................................................................................................................. HSP 2 e-value: 6.0E-16 bit: 86.7 Len: 243 Query Start:140 Query End:382 Subject Strand: null Subject Start: 241 Subject End: 319 ........................................................................................................................................... L M K L S S K I A R S Q R L L M G L L I I K - I Y S K G I T A E A L K S G A I K P K Q L D N E L K V N R P E A R V I N A V G S K I K P K S Q E Q Q A Q K S K G F S L ......................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................... L L K K D S Q L S M A - - - L E G L A T H K D I Q Q K G I T A E A L K S G I I Q P L M L N N E F K V N R P E A R T I N A T G S K I E P K T Q E L Q A Q K A N S F S L ......................................................................................................................................................................................................................................................................................................................... taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 36 End: 125 ................................... M K N E Q N N Y R F P A V L A E F S K S K N R L R S F F A L .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 52 End: 153 ................................................... M T T A S L R F L L N S Q R V K T D Y A L F L L F R L F F I E K N L .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 192 End: 347 ............................................................................................................................................................................................... M L E P T A L I T L A S G R L T F N S L S S C L G L I A P D F K A S A V M P L L Y I F M I S K P I K S L ............................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: + Start: 257 End: 367 ................................................................................................................................................................................................................................................................ M F R L D S A R F Q G F C G Y A F A V Y L Y D Q Q T H Q E P L R S G Y L A ........................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 264 End: 647 ....................................................................................................................................................................................................................................................................... V K S Q E V N L E F L S S N I I K E L S K Y E K H Y F I A N I E D Q L V I R Q I P Y S N K L L S I S N V E F D R A L Y M ................................................ Protein_Len: 60 Strand: - Start: 140 End: 379 ........................................................................................................................................... G V A N I V R A E P R N V K L E N D L Q K P K I A G S K L A E A T I G K S Y I K I I L L G M L L R Q S R A I K S S L K M ............................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 1 End: 90 L Y L T D L A V I L L Y L F R A F Y S G S G Q P E Q Q I R M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 486 End: 515 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTCAAATAGTGAACTATTTATAAT.................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 577 End: 606 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAAATTCATATCCTATTCAAAGAAT......................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -2.6 Tail_Score: -3.16345 Start: 57 End: 74 Full_Region: tgagaattcagcaag aaccgc agggaa gcggta gttattttgctcgtt ........................................................aaccgcagggaagcggta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 55 HP_score: -2.6 Tail_Score: -4.25873 Start: 84 End: 130 Full_Region: GCGGTTCTTGCTGAA TTCTCAAAGAGTAAAAACAGA CTACGC TCTTTTTTTGCTCTTTAGAC TATTTTTTATAGAGA ...................................................................................TTCTCAAAGAGTAAAAACAGACTACGCTCTTTTTTTGCTCTTTAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 59 HP_score: -6.1 Tail_Score: -3.14801 Start: 85 End: 129 Full_Region: CGGTTCTTGCTGAAT TCTCAAAGAGTAAAAACAGA CTACGC TCTTTTTTTGCTCTTTAGA CTATTTTTTATAGAG ....................................................................................TCTCAAAGAGTAAAAACAGACTACGCTCTTTTTTTGCTCTTTAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 59 HP_score: -5.3 Tail_Score: -3.74198 Start: 92 End: 123 Full_Region: TGCTGAATTCTCAAA GAGTAAAAACAGA CTACGC TCTTTTTTTGCTC TTTAGACTATTTTTT ...........................................................................................GAGTAAAAACAGACTACGCTCTTTTTTTGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 50 HP_score: -3.1 Tail_Score: -3.60792 Start: 92 End: 123 Full_Region: aaaaaatagtctaaa gagcaaaaaaaga gcgtag tctgtttttactc tttgagaattcagca ...........................................................................................gagcaaaaaaagagcgtagtctgtttttactc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 72 HP_score: -4.9 Tail_Score: -4.88407 Start: 457 End: 469 Full_Region: ttgaacaatctaaag tctat aaa ataga tttttcattcaatag ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctataaaataga.................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 48 HP_score: -2.8 Tail_Score: -3.65529 Start: 601 End: 618 Full_Region: ATAGGATATGAATTT TTCAAT AAACTA ATTGAA TTTACCTCAAAATCT ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATAAACTAATTGAA............................................................................. Find igs database================================================ Query_seq: AA01132:AA01133|AA01132:AA01133:possible cell filamentation protein:conserved hypothetical protein:->->:775968..776662 695 taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactattttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntta Intra-Species Hit: Count: 2 Min: 1 Max: 139 Len: 139 Subject: aact_AA01132_AA01133|possible cell filamentation protein:conserved hypothetical protein|POSITIVE:POSITIVE|[775968,776662]|695 HSP 1 e-value: 1.0E-72 bit: 276.0 Len: 139 Query Start:1 Query End:139 Subject Strand: POSITIVE Subject Start: 1 Subject End: 139 taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactatttttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ taaatacaacgtatcaagagccacaataagcagatataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattctcaaagagtaaaaacagactacgctctttttttgctctttagactatttttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: aact_AA01134_AA01135|conserved hypothetical protein:possible cell filamentation protein|POSITIVE:POSITIVE|[777348,777520]|173 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 104 Query Start:36 Query End:139 Subject Strand: POSITIVE Subject Start: 68 Subject End: 173 ...................................ataaaaaacgagcaaaataactaccgcttccctgcggttcttgctgaattct-caaagagtaaaaacagactacgctc-tttttttgctctttagactatttttta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...................................ataaaaaacgagcaaaataactaccgctttcctacggttgttgctgaattctccaaagagtaaagacggactacgttcgtttttttactctttagactattattta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUACAACGUAUCAAGAGCCACAAUAAGCAGAUAUAAAAAACGAGCAAAAUAACUACCGCUUCCCUGCGGUUCUUGCUGAAUUCUCAAAGAGUAAAAACAGACUACGCUCUUUUUUUGCUCUUUAGACUAUUUUUUA ..........(((((....((........)).)))))........(((((.......(((((......)))))..)))))....(((.((((((((((((.(((......))).))))))))))))))).......... (-28.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAAAUAGUCUAAAGAGCAAAAAAAGAGCGUAGUCUGUUUUUACUCUUUGAGAAUUCAGCAAGAACCGCAGGGAAGCGGUAGUUAUUUUGCUCGUUUUUUAUAUCUGCUUAUUGUGGCUCUUGAUACGUUGUAUUUA ....(((((.(((((((((.(((((.(((......))).))))).)))))).)))......(((((.((((((..((((((.(((......)))............)))))).)))))).)))))........))))). (-31.22) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 335 89 46 56 5 aact:AA01473|5end_type_I_restriction-modification_system_S_(specificity_subunit)_989025..989255_POSITIVE 311 69 22 130 75 aact:AA01187|5end_conserved_hypothetical_protein_813331..813561_POSITIVE 305 80 31 144 97 aact:AA01532|5end_hypothetical_protein_1028771..1029001_POSITIVE 305 80 31 78 31 aact:AA01531|5end_hypothetical_protein_1028705..1028935_POSITIVE 295 110 61 196 146 aact:AA02351|5end_conserved_hypothetical_protein_1609233..1609463_POSITIVE 279 73 35 164 116 aact:AA00501|5end_hypothetical_protein_347293..347523_POSITIVE 271 77 34 191 146 aact:AA02668|5end_gluconate_permease_1856758..1856988_POSITIVE 268 70 29 147 103 aact:AA00409|5end_methionyl-tRNA_formyltransferase_273611..273841_POSITIVE 268 87 44 49 16 aact:AA00250|5end_lipoate_biosynthesis_protein_A_175496..175726_POSITIVE 261 89 41 63 9 aact:AA02671|5end_gluconokinase_1858322..1858552_POSITIVE 260 90 44 60 21 aact:AA01660|5end_hypothetical_protein_1125035..1125265_POSITIVE 243 87 48 205 166 aact:AA00606|5end_membrane-associated_zinc_metalloprotease_411808..412038_POSITIVE 243 104 61 56 9 aact:AA00343|5end_conserved_hypothetical_protein_(possible_cytosolic_protein)_229908..230138_POSITIVE 242 89 43 161 122 aact:AA00894|5end_selenium_transferase_(Cysteinyl-tRNA(Sec)_selenium_transferase)_619879..620109_POSITIVE 238 72 44 144 114 aact:AA00525|5end_hypothetical_protein_359254..359484_POSITIVE 237 83 56 230 189 aact:AA02162|5end_lipoprotein_1478950..1479180_POSITIVE 237 108 61 176 125 aact:AA01733|5end_hypothetical_protein_1171777..1172007_POSITIVE 237 71 40 71 39 aact:AA01692|5end_hexulose-6-phosphate_synthase_1149178..1149408_POSITIVE 237 88 45 129 83 aact:AA01418|5end_conserved_hypothetical_protein_953951..954181_POSITIVE 237 95 56 140 111 aact:AA01078|5end_transcriptional_regulator_(probable_MerR_family)_746873..747103_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 335 89 46 109 58 aact:AA01472|3end_hypothetical_protein_989158..989308_POSITIVE 311 69 22 120 65 aact:AA01185|3end_conserved_hypothetical_protein_(possible_membrane_protein)_813401..813551_POSITIVE 303 110 61 116 53 aact:AA00349|3end_hypothetical_protein_233527..233677_POSITIVE 295 110 61 62 12 aact:AA02350|3end_possible_lipoprotein_1609179..1609329_POSITIVE 294 82 44 44 9 aact:AA01530|3end_conserved_hypothetical_protein_1028749..1028899_POSITIVE 280 106 67 109 71 aact:AA00943|3end_conserved_hypothetical_protein_654542..654692_POSITIVE 279 73 35 147 99 aact:AA00500|3end_hypothetical_protein_347356..347506_POSITIVE 279 73 35 70 22 aact:AA00499|3end_pyridoxamine-5'-phosphate_oxidase_347279..347429_POSITIVE 278 95 58 54 3 aact:AA01566|3end_conserved_hypothetical_protein_1052091..1052241_POSITIVE 278 95 58 54 3 aact:AA01261|3end_conserved_hypothetical_protein_856723..856873_POSITIVE 268 70 29 144 100 aact:AA00408|3end_SUN_protein_(FMU_protein)_273688..273838_POSITIVE 251 96 61 134 95 aact:AA02954|3end_penicillin_tolerance_protein;_hydroxymethylbutenyl_pyrophosphate_reductase_2066631..2066781_POSITIVE 246 82 43 126 90 aact:AA00093|3end_L-serine_dehydratase_(L-serine_deaminase)_71173..71323_POSITIVE 244 86 56 133 88 aact:AA02160|3end_conserved_hypothetical_protein_1478929..1479079_POSITIVE 243 86 47 59 9 aact:AA00809|3end_possible_oxidoreductase_555435..555585_POSITIVE 237 88 45 126 80 aact:AA01417|3end_probable_4-diphosphocytidyl-2C-methyl-D-erthyritol_synthase_(MEP_cytidyltransferase)_(MCT)_954028..954178_POSITIVE 237 95 56 57 28 aact:AA01077|3end_transposase_746870..747020_POSITIVE 236 70 30 43 6 aact:AA02042|3end_tagatose_1,6-diphosphate_aldolase_1390277..1390427_POSITIVE 235 110 61 69 7 aact:AA01316|3end_hypothetical_protein_891491..891641_POSITIVE 232 97 54 53 16 aact:AA02204|3end_hypothetical_protein_1501262..1501412_POSITIVE