Origin IGS: taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatacaaaagttcttgaagtacgaaccgattgagcaattactgctgttaaaggcaaagcaagaaatacttgcaagataggtcaatatgttaacacaggaaatcaatgaactcatatcattcatgcctgaagtccctcaacctccatcgttgataactgcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgattagccttacgtagtcatccacaacttgttgaggttcatgataactattaccgggcaatcaagcgaattttattgcgattagagaaaaaggactagttgaacgtgaagggttttatcggcttgaggttgctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaagattccgtgcgcggagcattaatctttttttctacataaaacaccatgaaattagcccgaaagatgtcaaatggaaactcattactaattaaagtagcaacctcaagccgataaaacccttcacgttcaactagtcctttttctctaatcgcaataaaattcgcttgattgcccggtaatagttatcatgaacctcaacaagttgtggatgactacgtaaggctaatcaggctctgcaatttcaaaataaggcaactagtagtcattatgctcttgtaaaacctttgcaatgcaagggcagttatcaacgatggaggttgagggacttcaggcatgaatgatatgagttcattgatttcctgtgttaacatattgacctatcttgcaagtatttcttgctttgcctttaacagcagtaattgctcaatcggttcgtacttcaagaacttttgtatcacaataaaaaacccctatcaaatgtaattttaatagggattttagaatttttaataaatctttgtgcaactgctacataataccgaattcacctgaaaaagtaaccgcactttttattagccgatgctta Mask Tandem Repeat Region ================================================ taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatacaaaagttcttgaagtacgaaccgattgagcaattactgctgttaaaggcaaagcaagaaatacttgcaagataggtcaatatgttaacacaggaaatcaatgaactcatatcattcatgcctgaagtccctcaacctccatcgttgataactgcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgattagccttacgtagtcatccacaacttgttgaggttcatgataactattaccgggcaatcaagcgaattttattgcgattagagaaaaaggactagttgaacgtgaagggttttatcggcttgaggttgctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Find is-nt database================================================ Query_seq: AA01127:AA01128|AA01127:AA01128:energy transducer protein:hypothetical protein:->->:773581..774169 589 taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatacaaaagttcttgaagtacgaaccgattgagcaattactgctgttaaaggcaaagcaagaaatacttgcaagataggtcaatatgttaacacaggaaatcaatgaactcatatcattcatgcctgaagtccctcaacctccatcgttgataactgcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgattagccttacgtagtcatccacaacttgttgaggttcatgataactattaccgggcaatcaagcgaattttattgcgattagagaaaaaggactagttgaacgtgaagggttttatcggcttgaggttgctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA01127:AA01128|AA01127:AA01128:energy transducer protein:hypothetical protein:->->:773581..774169 589 taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatacaaaagttcttgaagtacgaaccgattgagcaattactgctgttaaaggcaaagcaagaaatacttgcaagataggtcaatatgttaacacaggaaatcaatgaactcatatcattcatgcctgaagtccctcaacctccatcgttgataactgcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgattagccttacgtagtcatccacaacttgttgaggttcatgataactattaccgggcaatcaagcgaattttattgcgattagagaaaaaggactagttgaacgtgaagggttttatcggcttgaggttgctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA01127:AA01128|AA01127:AA01128:energy transducer protein:hypothetical protein:->->:773581..774169 589 taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatacaaaagttcttgaagtacgaaccgattgagcaattactgctgttaaaggcaaagcaagaaatacttgcaagataggtcaatatgttaacacaggaaatcaatgaactcatatcattcatgcctgaagtccctcaacctccatcgttgataactgcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgattagccttacgtagtcatccacaacttgttgaggttcatgataactattaccgggcaatcaagcgaattttattgcgattagagaaaaaggactagttgaacgtgaagggttttatcggcttgaggttgctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 135 Max: 489 Len: 355 Subject: UniRef90_Q7VL72 Cluster: Hypothetical protein; n=1; Haemophilus ducreyi|Rep: Hypothetical protein - Haemophilus ducreyi HSP 1 e-value: 1.0E-10 bit: 45.4 Len: 153 Query Start:135 Query End:287 Subject Strand: null Subject Start: 3 Subject End: 54 ...................................................................................................................................... Q K F L K Y E P I E Q L L L L K A K Q E I L A R * V N M L T Q E I N E L - I S F M P E V P Q - P P S L I T .............................................................................................................................................................................................................................................................................................................. ...................................................................................................................................... Q K L S K Q E - L G E R L L L K E K Q E R L T K Q I N A L T Q E I G E L A L P F I P K A P K T P P S L I T .............................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-10 bit: 43.1 Len: 129 Query Start:361 Query End:489 Subject Strand: null Subject Start: 79 Subject End: 120 ........................................................................................................................................................................................................................................................................................................................................................................ L A L R S H P Q L V E V H D N Y Y R A I K R I L L R L E K K D * L N V K G F I G L R L .................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................ L K L Q G Q P Q F V D V G D S Y Y R A V K S M L L R L E K K G - L V V R G G F H W R L .................................................................................................... taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 62 End: 160 ............................................................. M H K D L L K I L K S L L K L H L I G V F Y C D T K V L E V R T D ............................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 216 End: 371 ....................................................................................................................................................................................................................... M L T Q E I N E L I S F M P E V P Q P P S L I T A L A L Q R F Y K S I M T T S C L I L K L Q S L I S L T .......................................................................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 432 End: 587 ............................................................................................................................................................................................................................................................................................................................................................................................................................................... M A I R E K G L V E R E G F Y R L E V A T L I S N E F P F D I F R A N F M V F Y V E K K I N A P R T E S .. Protein_Len: 36 Strand: - Start: 311 End: 418 ...................................................................................................................................................................................................................................................................................................................... L L M I V V L Q R I K F N C L R I L R V Y D D V V Q Q P E H Y S N G P M ........................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 249 End: 353 ........................................................................................................................................................................................................................................................ E H R F D R L R W R Q Y S G K C Q L P K V L A Y H S S T A K N Q F Q M ............................................................................................................................................................................................................................................ Protein_Len: 49 Strand: - Start: 107 End: 253 .......................................................................................................... M Q Y P N K I T I C F N K F Y S G I S C N S S N F A F C S I S A L Y T L I N V C S I L S S M D N M ................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 54 End: 167 ..................................................... T A T A C L N I L F E L I G I L I V N S L P K K N H Y L L E Q L V F R N L M ...................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 1 End: 114 L C R S I F L A T V K E P S N P I I Y C N C L S K N F I R F D R N F N C K M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 88 HP_score: -5.7 Tail_Score: -5.58179 Start: 92 End: 119 Full_Region: TTAAAAATTCTAAAA TCCCTATTAAA ATTACA TTTGATAGGGG TTTTTTATTGTGATA ...........................................................................................TCCCTATTAAAATTACATTTGATAGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -7.0 Tail_Score: -3.9328 Start: 93 End: 118 Full_Region: TAAAAATTCTAAAAT CCCTATTAAA ATTACA TTTGATAGGG GTTTTTTATTGTGAT ............................................................................................CCCTATTAAAATTACATTTGATAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 53 HP_score: -4.8 Tail_Score: -3.17713 Start: 93 End: 118 Full_Region: atcacaataaaaaac ccctatcaaa tgtaat tttaataggg attttagaattttta ............................................................................................ccctatcaaatgtaattttaataggg....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 63 HP_score: -5.7 Tail_Score: -3.84451 Start: 188 End: 202 Full_Region: atattgacctatctt gcaag tattt cttgc tttgcctttaacagc ...........................................................................................................................................................................................gcaagtatttcttgc................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -6.5 Tail_Score: -4.07885 Start: 289 End: 305 Full_Region: CATCGTTGATAACTG CCCTTGC ATT GCAAAGG TTTTACAAGAGCATA ................................................................................................................................................................................................................................................................................................CCCTTGCATTGCAAAGG............................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: AA01127:AA01128|AA01127:AA01128:energy transducer protein:hypothetical protein:->->:773581..774169 589 taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt Intra-Species Hit: Count: 1 Min: 1 Max: 589 Len: 589 Subject: aact_AA01127_AA01128|energy transducer protein:hypothetical protein|POSITIVE:POSITIVE|[773581,774169]|589 HSP 1 e-value: 8.0E-70 bit: 266.0 Len: 134 Query Start:1 Query End:134 Subject Strand: POSITIVE Subject Start: 1 Subject End: 134 taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgata....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taagcatcggctaataaaaagtgcggttactttttcaggtgaattcggtattatgtagcagttgcacaaagatttattaaaaattctaaaatccctattaaaattacatttgataggggttttttattgtgata....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-37 bit: 157.0 Len: 100 Query Start:490 Query End:589 Subject Strand: POSITIVE Subject Start: 490 Subject End: 589 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagnnnnnnngattaatgctccgcgcacggaatcttt .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctactttaattagtaatgagtttccatttgacatctttcgggctaatttcatggtgttttatgtagaaaaaaagattaatgctccgcgcacggaatcttt HSP 3 e-value: 8.0E-33 bit: 143.0 Len: 72 Query Start:289 Query End:360 Subject Strand: POSITIVE Subject Start: 289 Subject End: 360 ................................................................................................................................................................................................................................................................................................cccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctga..................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................cccttgcattgcaaaggttttacaagagcataatgactactagttgccttattttgaaattgcagagcctga..................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCAUCGGCUAAUAAAAAGUGCGGUUACUUUUUCAGGUGAAUUCGGUAUUAUGUAGCAGUUGCACAAAGAUUUAUUAAAAAUUCUAAAAUCCCUAUUAAAAUUACAUUUGAUAGGGGUUUUUUAUUGUGAUACAAAAGUUCUUGAAGUACGAACCGAUUGAGCAAUUACUGCUGUUAAAGGCAAAGCAAGAAAUACUUGCAAGAUAGGUCAAUAUGUUAACACAGGAAAUCAAUGAACUCAUAUCAUUCAUGCCUGAAGUCCCUCAACCUCCAUCGUUGAUAACUGCCCUUGCAUUGCAAAGGUUUUACAAGAGCAUAAUGACUACUAGUUGCCUUAUUUUGAAAUUGCAGAGCCUGAUUAGCCUUACGUAGUCAUCCACAACUUGUUGAGGUUCAUGAUAACUAUUACCGGGCAAUCAAGCGAAUUUUAUUGCGAUUAGAGAAAAAGGACUAGUUGAACGUGAAGGGUUUUAUCGGCUUGAGGUUGCUACUUUAAUUAGUAAUGAGUUUCCAUUUGACAUCUUUCGGGCUAAUUUCAUGGUGUUUUAUGUAGAAAAAAAGAUUAAUGCUCCGCGCACGGAAUCUUU ..(((....)))........((((((((....(((((((....((..(((((((...((....))......................(((((((((((((((......))))))))))))))).....)))))))..))...)))))))....))))....(((((.....((((......))))..(((((.....)))))........((.(((((..(((((..(((((.(((((.......)))))...((((((((((...(((((((....((((((((..((((((.(((.......((((.....)))).......(.((((((..((((.((((..((((((((.((.(((((.((((...(((((.(((...(((((....)))))...))).)))))....))))))))).))........))))))))..)))).)))))))))).)...))))))))).))))))))..))))))).((((......))))..............)))....)))))))..)))))...))))).))))).))............)))))...))))......... (-147.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAGAUUCCGUGCGCGGAGCAUUAAUCUUUUUUUCUACAUAAAACACCAUGAAAUUAGCCCGAAAGAUGUCAAAUGGAAACUCAUUACUAAUUAAAGUAGCAACCUCAAGCCGAUAAAACCCUUCACGUUCAACUAGUCCUUUUUCUCUAAUCGCAAUAAAAUUCGCUUGAUUGCCCGGUAAUAGUUAUCAUGAACCUCAACAAGUUGUGGAUGACUACGUAAGGCUAAUCAGGCUCUGCAAUUUCAAAAUAAGGCAACUAGUAGUCAUUAUGCUCUUGUAAAACCUUUGCAAUGCAAGGGCAGUUAUCAACGAUGGAGGUUGAGGGACUUCAGGCAUGAAUGAUAUGAGUUCAUUGAUUUCCUGUGUUAACAUAUUGACCUAUCUUGCAAGUAUUUCUUGCUUUGCCUUUAACAGCAGUAAUUGCUCAAUCGGUUCGUACUUCAAGAACUUUUGUAUCACAAUAAAAAACCCCUAUCAAAUGUAAUUUUAAUAGGGAUUUUAGAAUUUUUAAUAAAUCUUUGUGCAACUGCUACAUAAUACCGAAUUCACCUGAAAAAGUAACCGCACUUUUUAUUAGCCGAUGCUUA ......((((....))))(((((.(((((((...((((((........)))....)))...))))))).......(....)......(((((.(((((.((..((((((...........((((((((((..((((((((((.......(((.(((.........(((((((((((......((((((((...(((........)))...)))))))).....))).))))))))..))).))).......))))..))))))........((((((((((............))))))))))......)))).))))))))))))...((((((.((((((.......)))))).((.(((..((((((.................(((((.....)))))............((((((...(((.(((..(((((.........)))))...............((((.((((((.(((......))).)))))).))))..................))).)))))))))...)))))).))).)).)))))).........)))))))..)))))..)))))... (-130.24) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 526 99 51 163 110 aact:AA00816|5end_lacZ_expression_regulator_560900..561130_POSITIVE 367 59 13 51 8 aact:AA00482|5end_hydrolase_(haloacid_dehalogenase-like)_(HAD_superfamily)_335232..335462_POSITIVE 367 48 2 146 100 aact:AA00148|5end_ATP-dependent_RNA_helicase_105955..106185_POSITIVE 344 41 6 122 83 aact:AA03010|5end_thiophene_and_furan_oxidation_protein_2101102..2101332_POSITIVE 344 377 331 130 81 aact:AA01477|5end_type_I_restriction_enzyme_R_protein_992249..992479_POSITIVE 341 48 7 220 175 aact:AA02519|5end_DNA_gyrase_A_1749872..1750102_POSITIVE 341 48 7 55 10 aact:AA02518|5end_hypothetical_protein_1749707..1749937_POSITIVE 338 300 254 86 25 aact:AA01582|5end_hypothetical_protein_1065425..1065655_POSITIVE 325 305 263 226 182 aact:AA02949|5end_hypothetical_protein_2061944..2062174_POSITIVE 324 300 252 104 58 aact:AA00574|5end_regulatory_protein_392113..392343_POSITIVE 323 68 21 157 109 aact:AA02076|5end_conserved_hypothetical_protein_1409926..1410156_POSITIVE 319 45 8 106 71 aact:AA02577|5end_nuclease_1795267..1795497_POSITIVE 319 48 3 229 182 aact:AA02288|5end_conserved_hypothetical_protein_1558590..1558820_POSITIVE 314 59 17 153 107 aact:AA00142|5end_glycerate_kinase_101309..101539_POSITIVE 311 48 6 143 94 aact:AA01407|5end_outer_membrane_antigenic_lipoprotein_b_precursor_949005..949235_POSITIVE 309 47 4 178 144 aact:AA01519|5end_conserved_hypothetical_protein_1021794..1022024_POSITIVE 309 47 9 187 149 aact:AA00395|5end_conserved_hypothetical_protein_265278..265508_POSITIVE 305 60 16 161 101 aact:AA01954|5end_excinuclease_ABC,_subunit_C_1320468..1320698_POSITIVE 305 48 17 162 130 aact:AA00145|5end_probable_degenerate_transposase_fragment_105046..105276_POSITIVE 304 490 449 200 148 aact:AA02910|5end_ribonuclease_E_2036137..2036367_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 443 65 21 55 10 aact:AA02697|3end_hydrogenase_3_maturation_protease_1880408..1880558_POSITIVE 367 48 2 55 9 aact:AA00146|3end_UDP-glucose/GDP-mannose_dehydrogenase_105944..106094_POSITIVE 357 41 4 113 81 aact:AA02135|3end_hypothetical_protein_1459067..1459217_POSITIVE 357 41 4 129 97 aact:AA02135.1|3end_hypothetical_protein_1459083..1459233_POSITIVE 350 58 17 111 60 aact:AA02286|3end_sugar_ABC_transporter,_ATP-binding_protein_1558536..1558686_POSITIVE 344 377 331 62 13 aact:AA01476|3end_hypothetical_protein_992261..992411_POSITIVE 341 48 7 49 4 aact:AA02516|3end_ferric_uptake_regulation_protein_1749781..1749931_POSITIVE 338 300 254 99 38 aact:AA01581|3end_possible_GTP-binding_protein_1065518..1065668_POSITIVE 325 305 263 76 32 aact:AA02947|3end_riboflavin_biosynthesis_protein_2061874..2062024_POSITIVE 323 68 21 130 82 aact:AA02075|3end_conserved_hypothetical_protein_1409979..1410129_POSITIVE 317 299 253 148 105 aact:AA00747|3end_UTP--hexose-1-phosphate_uridylyltransferase_/_UDPglucose-hexose-1-phosphate_uridylyltransferas_513504..513654_POSITIVE 314 59 17 77 31 aact:AA00141|3end_hypoxanthine_phosphoribosyl_transferase_(HPRT)_101313..101463_POSITIVE 309 47 4 95 61 aact:AA01517|3end_peptidyl-prolyl_cis-trans_isomerase;_macrophage_infectivity_protein_1021791..1021941_POSITIVE 309 47 9 77 39 aact:AA00391|3end_arsenate_reductase_265248..265398_POSITIVE 302 48 9 82 40 aact:AA00792|3end_conserved_hypothetical_protein_543662..543812_POSITIVE 301 295 251 150 92 aact:AA00585|3end_glycerol-3-phosphate_regulon_repressor_399778..399928_POSITIVE 298 189 152 149 113 aact:AA00723|3end_peptidase_B_(leucyl_aminopeptidase)_497841..497991_POSITIVE 295 440 391 147 96 aact:AA01845|3end_gamma-glutamyltranspeptidase_precursor_1241687..1241837_POSITIVE 295 50 4 84 37 aact:AA00046|3end_formate_dependent_nitrite_reductase,_cytochrome-c_type_protein_36756..36906_POSITIVE 291 297 251 128 96 aact:AA02602|3end_conserved_hypothetical_protein_1814302..1814452_POSITIVE