Origin IGS: tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taactgtacgaatccattccggtgtctttggcaacgtatccgcaacatttgtcctattaatagtgtgagcgtgttttgtttatgttcatataacagtctaactttcagaaacacctcaaaaaaacagtctgataaaccaattaaaacttgcggaaggaaaacctcatgatcacccaacattcaaacaacaatgtgttgatttaatgcttaaacaaaatcatatcatattccaggtcagcaaaatgaattagtcagcacgtcggcattgtaacgctgaataataaagcgacaaggtataacgtcagacaaattggatgttattttgagattcatcgttccactctgtttagttgtaagaaagccaaatcgaattagagcgtatcaggacattcaaacgaaaattatctgtctgcttccagagaatagggaaatttacggttcacgtcggttaacttggacattatggcaaatggggtagaaaatagggcgtgataaaacccgtaaactgatgatggatttacgattgaggtcccattatacgcgtcagaagttttattggcatagtagacaaaatagttggtaaaaagtgggttaagactttatagcacgaggctttaacccacttttttgaatttatgaacaaaaaaatgcattttttgccaacatagcccgcttcaaaagtatggcacacaaaatcatctttagcgctataaatgcccgcactgcaataaa Mask Tandem Repeat Region ================================================ tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Find is-nt database================================================ Query_seq: AA00882:AA00883|AA00882:AA00883:hypothetical protein:hypothetical protein:->->:613706..614437 732 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00882:AA00883|AA00882:AA00883:hypothetical protein:hypothetical protein:->->:613706..614437 732 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00882:AA00883|AA00882:AA00883:hypothetical protein:hypothetical protein:->->:613706..614437 732 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 4 End: 96 ... M A V R A F I A L K M I L C A I L L K R A M L A K N A F F C S ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 18 End: 212 ................. M Y S A K D D F V C H T F E A G Y V G K K C I F L F I N S K K W V K A S C Y K V L T H F L P T I L S T M P I K L L T R I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 209 End: 328 ................................................................................................................................................................................................................ M V N P S S V Y G F Y H A L F S T P F A I M S K L T D V N R K F P Y S L E A D R .................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 361 End: 495 ........................................................................................................................................................................................................................................................................................................................................................................ M R F G F L T T K Q S G T M N L K I T S N L S D V I P C R F I I Q R Y N A D V L T N S F C ............................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 553 End: 732 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L G D H E V F L P Q V L I G L S D C F F E V F L K V R L L Y E H K Q N T L T L L I G Q M L R I R C Q R H R N G F V Q L Protein_Len: 43 Strand: - Start: 567 End: 695 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S T K R G C T K I P K D S Q K K S T N R F T L S N Y S C L C F V S V S N I P C I N R M ..................................... Protein_Len: 40 Strand: - Start: 485 End: 604 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N M K S V Q F I I H N Q K L M L D V C Q Q K F T P H D H P K G E A L K L Q N I M ................................................................................................................................ Protein_Len: 42 Strand: - Start: 361 End: 486 ........................................................................................................................................................................................................................................................................................................................................................................ N S K A K K C S F L T S R H I E F Y C G I Q R V N Y R T A K N N L T V I G V H Q S M ...................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 258 End: 455 ................................................................................................................................................................................................................................................................. W T L R R S G Y I E R N E P L L C I I K T Q I D Q Y A R I R N P K R V V L C L P V I F R L I V D L K D S T I G Q R K I M ..................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 153 End: 251 ........................................................................................................................................................ W S N Q R S H W Y F K Q R T Y H S R L R L D M M L K R T K D R G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 3 End: 101 .. I A T R A N I A S F I I K H A M S K F R A I N A F F A N K Q E Y M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 170 End: 199 .........................................................................................................................................................................TATGCCAATAAAACTTCTGACGCGTATAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 53 HP_score: -4.7 Tail_Score: -3.21912 Start: 74 End: 92 Full_Region: AGCGGGCTATGTTGG CAAAAAA TGCAT TTTTTTG TTCATAAATTCAAAA .........................................................................CAAAAAATGCATTTTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 83 HP_score: -5.9 Tail_Score: -5.24449 Start: 110 End: 146 Full_Region: aatagttggtaaaaa gtgggttaagactttat agc acgaggctttaacccac ttttttgaatttatg .............................................................................................................gtgggttaagactttatagcacgaggctttaacccac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: AA00882:AA00883|AA00882:AA00883:hypothetical protein:hypothetical protein:->->:613706..614437 732 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Intra-Species Hit: Count: 1 Min: 1 Max: 732 Len: 732 Subject: aact_AA00882_AA00883|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[613706,614437]|732 HSP 1 e-value: 0.0 bit: 1368.0 Len: 732 Query Start:1 Query End:732 Subject Strand: POSITIVE Subject Start: 1 Subject End: 732 tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcannnnnnngttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgnnnnnnngaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta tttattgcagtgcgggcatttatagcgctaaagatgattttgtgtgccatacttttgaagcgggctatgttggcaaaaaatgcatttttttgttcataaattcaaaaaagtgggttaaagcctcgtgctataaagtcttaacccactttttaccaactattttgtctactatgccaataaaacttctgacgcgtataatgggacctcaatcgtaaatccatcatcagtttacgggttttatcacgccctattttctaccccatttgccataatgtccaagttaaccgacgtgaaccgtaaatttccctattctctggaagcagacagataattttcgtttgaatgtcctgatacgctctaattcgatttggctttcttacaactaaacagagtggaacgatgaatctcaaaataacatccaatttgtctgacgttataccttgtcgctttattattcagcgttacaatgccgacgtgctgactaattcattttgctgacctggaatatgatatgattttgtttaagcattaaatcaacacattgttgtttgaatgttgggtgatcatgaggttttccttccgcaagttttaattggtttatcagactgtttttttgaggtgtttctgaaagttagactgttatatgaacataaacaaaacacgctcacactattaataggacaaatgttgcggatacgttgccaaagacaccggaatggattcgtacagtta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAUUGCAGUGCGGGCAUUUAUAGCGCUAAAGAUGAUUUUGUGUGCCAUACUUUUGAAGCGGGCUAUGUUGGCAAAAAAUGCAUUUUUUUGUUCAUAAAUUCAAAAAAGUGGGUUAAAGCCUCGUGCUAUAAAGUCUUAACCCACUUUUUACCAACUAUUUUGUCUACUAUGCCAAUAAAACUUCUGACGCGUAUAAUGGGACCUCAAUCGUAAAUCCAUCAUCAGUUUACGGGUUUUAUCACGCCCUAUUUUCUACCCCAUUUGCCAUAAUGUCCAAGUUAACCGACGUGAACCGUAAAUUUCCCUAUUCUCUGGAAGCAGACAGAUAAUUUUCGUUUGAAUGUCCUGAUACGCUCUAAUUCGAUUUGGCUUUCUUACAACUAAACAGAGUGGAACGAUGAAUCUCAAAAUAACAUCCAAUUUGUCUGACGUUAUACCUUGUCGCUUUAUUAUUCAGCGUUACAAUGCCGACGUGCUGACUAAUUCAUUUUGCUGACCUGGAAUAUGAUAUGAUUUUGUUUAAGCAUUAAAUCAACACAUUGUUGUUUGAAUGUUGGGUGAUCAUGAGGUUUUCCUUCCGCAAGUUUUAAUUGGUUUAUCAGACUGUUUUUUUGAGGUGUUUCUGAAAGUUAGACUGUUAUAUGAACAUAAACAAAACACGCUCACACUAUUAAUAGGACAAAUGUUGCGGAUACGUUGCCAAAGACACCGGAAUGGAUUCGUACAGUUA .........((((((((((((...((((...(((....)))..)))).............(((......(((((((....((((....(((((((.........((((((((((((((..(.............)..))))))))))))))............((((..((.((((((((((((((((..((((((...(((((.((((.((.((((..(((...(((((((((......(((((.(...((..((....((((......))))....))..))..).))))).))))))))).........((((....))))..))).)))).)).))))..))))).)))))).((((......))))................))))((((((.((.((((((((......((((((((...((.((((.....((..(((((...((((.((((((((........)))..))))).)))).......)).)))..)).........(((((((((....)))..)))))).........)))).))..))))))))....)))))))))).)))))).)))))).)))))).))..))))........((((((((((((((...))))).((((.(((....))))))).))))).))))...........)))))))...))))......))))))).....))))))))..)))))))..... (-171.72) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACUGUACGAAUCCAUUCCGGUGUCUUUGGCAACGUAUCCGCAACAUUUGUCCUAUUAAUAGUGUGAGCGUGUUUUGUUUAUGUUCAUAUAACAGUCUAACUUUCAGAAACACCUCAAAAAAACAGUCUGAUAAACCAAUUAAAACUUGCGGAAGGAAAACCUCAUGAUCACCCAACAUUCAAACAACAAUGUGUUGAUUUAAUGCUUAAACAAAAUCAUAUCAUAUUCCAGGUCAGCAAAAUGAAUUAGUCAGCACGUCGGCAUUGUAACGCUGAAUAAUAAAGCGACAAGGUAUAACGUCAGACAAAUUGGAUGUUAUUUUGAGAUUCAUCGUUCCACUCUGUUUAGUUGUAAGAAAGCCAAAUCGAAUUAGAGCGUAUCAGGACAUUCAAACGAAAAUUAUCUGUCUGCUUCCAGAGAAUAGGGAAAUUUACGGUUCACGUCGGUUAACUUGGACAUUAUGGCAAAUGGGGUAGAAAAUAGGGCGUGAUAAAACCCGUAAACUGAUGAUGGAUUUACGAUUGAGGUCCCAUUAUACGCGUCAGAAGUUUUAUUGGCAUAGUAGACAAAAUAGUUGGUAAAAAGUGGGUUAAGACUUUAUAGCACGAGGCUUUAACCCACUUUUUUGAAUUUAUGAACAAAAAAAUGCAUUUUUUGCCAACAUAGCCCGCUUCAAAAGUAUGGCACACAAAAUCAUCUUUAGCGCUAUAAAUGCCCGCACUGCAAUAAA ...............(((.((((((....((((...(((.(((....((((((.(((((...(((((((((((.......))))))))))).....(((.....(((((..................))))).....((((((((....(.((((.((....((((.(((.....(((((((((....((...(((((((((.............................)))))))))...)).....(((.(.((((..((.((((..((((.........)))))))).))...))))).)))...)))))))))))).)))).....)).)))).)....))))))))..)))..(((((...(((((.((((((((..((((.(((((.((.((((((((.(((...((((........))))..(((((((.(((((((.(((..((....((((......))))....))..)))..)))))))......)))))))..)))))).))))).)).)))))))))....)))))).))...)))))..))))).)))))))))))...((((((((((((((((((((..((((.......))))..))))))))).((((((..........)))))).......)))))))))))...(((.(((.....)))..))).................)))..)))..)))).)))))).)))... (-168.92) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 648 156 111 149 104 aact:AA02366|5end_hypothetical_protein_1623020..1623250_POSITIVE 401 480 431 180 126 aact:AA00341|5end_hypothetical_protein_229388..229618_POSITIVE 384 500 455 198 141 aact:AA00634|5end_DNA_polymerase_IV_(Pol_IV)_435182..435412_POSITIVE 381 290 246 206 159 aact:AA02025|5end_hypothetical_protein_1378667..1378897_POSITIVE 351 208 166 154 115 aact:AA01335|5end_primosomal_protein_N'_901993..902223_POSITIVE 348 498 459 161 128 aact:AA02266|5end_exodeoxyribonuclease_V_beta_chain_1541680..1541910_POSITIVE 348 480 432 61 7 aact:AA00729|5end_possible_hemolysin_(TlyC-like)_500204..500434_POSITIVE 336 480 436 49 9 aact:AA01776|5end_conserved_hypothetical_protein_1196074..1196304_POSITIVE 335 724 689 208 172 aact:AA02599|5end_outer_membrane_protein,_Slp_family_1810083..1810313_POSITIVE 326 500 455 218 165 aact:AA01767|5end_conserved_hypothetical_protein_1192528..1192758_POSITIVE 324 483 444 171 130 aact:AA01826|5end_iron(III)_ABC_transporter,_permease_protein_1229406..1229636_POSITIVE 323 55 13 208 154 aact:AA01248|5end_conserved_hypothetical_protein_(possible_phosphoesterase)_849734..849964_POSITIVE 323 55 13 138 84 aact:AA01247|5end_hypothetical_protein_849664..849894_POSITIVE 318 47 7 180 135 aact:AA00675|5end_glutaredoxin_2_462524..462754_POSITIVE 316 50 8 225 187 aact:AA01125|5end_hypothetical_protein_772192..772422_POSITIVE 314 726 683 157 119 aact:AA01347|5end_conserved_hypothetical_protein_913209..913439_POSITIVE 312 499 457 49 2 aact:AA00993|5end_possible_D-tyrosyl-tRNA(Tyr)_deacylase_694488..694718_POSITIVE 310 28 4 31 8 aact:AA02371|5end_oxygen-independent_coproporphyrinogen_III_oxidase_1624580..1624810_POSITIVE 309 478 441 53 14 aact:AA01866|5end_thiamin_ABC_transporter,_permease_protein_1253313..1253543_POSITIVE 307 500 451 104 59 aact:AA00596|5end_uridylate_kinase_407496..407726_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 401 480 431 137 83 aact:AA00340|3end_NADP(H)_oxidoreductase_(NAD(P)H_dehydrogenase_(quinone))_229425..229575_POSITIVE 384 500 455 103 46 aact:AA00633|3end_hypothetical_protein_435167..435317_POSITIVE 336 480 436 77 37 aact:AA01775|3end_hypothetical_protein_1196182..1196332_POSITIVE 323 55 13 75 21 aact:AA01245|3end_tyrosine-specific_transport_protein_2_849681..849831_POSITIVE 317 49 7 151 116 aact:AA00674|3end_nicotinate-nucleotide-dimethylbenzimidazole_phosphoribosyltransferase_462585..462735_POSITIVE 314 726 683 129 91 aact:AA01345|3end_conserved_hypothetical_protein_(possible_membrane_protein)_913261..913411_POSITIVE 312 499 457 49 2 aact:AA00992|3end_ribonuclease_BN_694568..694718_POSITIVE 306 509 465 100 55 aact:AA01679|3end_aspartate-semialdehyde_dehydrogenase;_PTS_system_enzyme_II_A_component_1135236..1135386_POSITIVE 296 730 683 148 107 aact:AA00959|3end_nitrate/nitrite_response_regulator_665302..665452_POSITIVE 295 502 468 48 7 aact:AA02152|3end_ferric_enterobactin_transport;_ABC_transporter_ATP-binding_protein_1472610..1472760_POSITIVE 294 729 683 141 96 aact:AA00537|3end_conserved_hypothetical_protein_368779..368929_POSITIVE 294 277 232 149 98 aact:AA00201|3end_prolipoprotein_diacylglyceryl_transferase_140614..140764_POSITIVE 293 84 56 48 18 aact:AA00952|3end_hemY_protein_homolog_658895..659045_POSITIVE 288 378 334 134 75 aact:AA01337|3end_cell_division_protein_N_905031..905181_POSITIVE 288 581 545 88 47 aact:AA00806|3end_fumarate_reductase_15_kD_hydrophobic_protein_552834..552984_POSITIVE 288 720 678 131 84 aact:AA00465|3end_hypothetical_protein_324600..324750_POSITIVE 287 476 440 145 108 aact:AA01811|3end_electron_transport_complex_protein_1221033..1221183_POSITIVE 287 46 4 56 7 aact:AA00835|3end_UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapep_tide)_576353..576503_POSITIVE 286 260 211 135 90 aact:AA02544|3end_ATP-dependent_RNA_helicase_1773945..1774095_POSITIVE 285 87 41 90 34 aact:AA00979|3end_type_B_carboxylesterase;_p-nitrobenzyl_esterase_685054..685204_POSITIVE