Origin IGS: taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agttattttcctgtggtgaatatgggaaaggcgaatagtaagtctgcctttgaaaatgggctgaaagctgaaatatcgttgttaaagccgacggctgtattttaatttattaatattattacgtgatataagcatgcgtcgggagaccataactgttcgaaacattataattcattgatatttttaaatatcttgccttcctccgtttacgggggacaaaacgcattgcgttttgagcgttggctctgccaacgaccccaaaggggtgagcaagtaagttttcgaacttgcgaataacgtgcccgaagggcggaaggggggatttatcttgatgtttccacaagatcatgcttaaaaattgagattttgccccctcagggcttcgcccggctcccctcgtgaacgagggaagccaagttttttttctttttatataaatagttacaatttttcgaacagctgtggtcgggagacgcgggctatctgttaaatgccatctattaagcgctatctcaaacgctattgatta Mask Tandem Repeat Region ================================================ taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Find is-nt database================================================ Query_seq: AA00776:AA00777|AA00776:AA00777:conserved hypothetical protein:soluble lytic murein transglycosylase:->->:533930..534458 529 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00776:AA00777|AA00776:AA00777:conserved hypothetical protein:soluble lytic murein transglycosylase:->->:533930..534458 529 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00776:AA00777|AA00776:AA00777:conserved hypothetical protein:soluble lytic murein transglycosylase:->->:533930..534458 529 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 207 End: 320 .............................................................................................................................................................................................................. M P P S A L R A R Y S Q V R K L T C S P L W G R W Q S Q R S K R N A F C P P ................................................................................................................................................................................................................. Protein_Len: 49 Strand: + Start: 197 End: 343 .................................................................................................................................................................................................... M K I N P P F R P S G T L F A S S K T Y L L T P L G S L A E P T L K T Q C V L S P V N G G R Q D I .......................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 7 End: 408 ...... M A F E I A L N R W H L T D S P R L P T T A V R K I V T I Y I K R K K T W L P S F T R G A G R S P E G A K S Q F L S M I ......................................................................................................................... Protein_Len: 35 Strand: + Start: 424 End: 528 ....................................................................................................................................................................................................................................................................................................................................................................................................................................... M K I Q P S A L T T I F Q L S A H F Q R Q T Y Y S P F P Y S P Q E N N . Protein_Len: 30 Strand: - Start: 428 End: 517 ........................................................................................................................................................................................................................................................................................................................................................................................................................................... F V A T P K L L S I E A K L G N E F A S K S N A K G M N V M ............ Protein_Len: 40 Strand: - Start: 236 End: 355 ........................................................................................................................................................................................................................................... E C T R F S V Q E G R Q P R Q C L W R E F R L A N Q G G Y V S S P L I N L F I M .............................................................................................................................................................................. Protein_Len: 43 Strand: - Start: 43 End: 171 .......................................... C I A R T E R G C S N S F N Y S N I Y F S F F S P K G R E R P S G P S A R L P C F R M ...................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 3 End: 92 .. D I A N S I A S L L H C K V S L G R R G V V A T R F I T V M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -10.0 Tail_Score: -6.4275 Start: 113 End: 144 Full_Region: cccctcagggcttcg cccggctcccctcg tgaa cgagggaagccaag ttttttttcttttta ................................................................................................................cccggctcccctcgtgaacgagggaagccaag................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 79 HP_score: -11.2 Tail_Score: -3.18605 Start: 115 End: 142 Full_Region: cctcagggcttcgcc cggctcccctcg tgaa cgagggaagcca agttttttttctttt ..................................................................................................................cggctcccctcgtgaacgagggaagcca................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 73 HP_score: -5.1 Tail_Score: -4.68846 Start: 431 End: 447 Full_Region: ctgaaatatcgttgt taaagcc gac ggctgta ttttaatttattaat ..............................................................................................................................................................................................................................................................................................................................................................................................................................................taaagccgacggctgta.................................................................................. Find igs database================================================ Query_seq: AA00776:AA00777|AA00776:AA00777:conserved hypothetical protein:soluble lytic murein transglycosylase:->->:533930..534458 529 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatataaaaagaaaaaaaacttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact Intra-Species Hit: Count: 6 Min: 1 Max: 529 Len: 529 Subject: aact_AA00776_AA00777|conserved hypothetical protein:soluble lytic murein transglycosylase|POSITIVE:POSITIVE|[533930,534458]|529 HSP 1 e-value: 0.0 bit: 827.0 Len: 417 Query Start:113 Query End:529 Subject Strand: POSITIVE Subject Start: 113 Subject End: 529 ................................................................................................................cttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact ................................................................................................................cttggcttccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgacgcatgcttatatcacgtaataatattaataaattaaaatacagccgtcggctttaacaacgatatttcagctttcagcccattttcaaaggcagacttactattcgcctttcccatattcaccacaggaaaataact HSP 2 e-value: 2.0E-48 bit: 194.0 Len: 98 Query Start:1 Query End:98 Subject Strand: POSITIVE Subject Start: 1 Subject End: 98 taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcaatagcgtttgagatagcgcttaatagatggcatttaacagatagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: aact_AA00861_AA00862|transcription repair coupling factor:conserved hypothetical protein|POSITIVE:POSITIVE|[596211,596604]|394 HSP 1 e-value: 1.0E-114 bit: 412.0 Len: 256 Query Start:121 Query End:376 Subject Strand: NEGATIVE Subject Start: 65 Subject End: 322 ........................................................................................................................ccctcgttcacgaggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtc-ccccgtaaacggaggaaggcaagatattt--aaaaatatcaatgaattataatgtttcgaaca......................................................................................................................................................... ........................................................................................................................ccctcgttcacg-ggggagctgggcgaagccctgagggggggaaatctcaatttttaagcatgatcttgtgaaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgtaaacttacttgctcacccctttgggggcgttggcagagccaacgctcaaaacgcaatgcgttttgtccccccgtaaacggaggaaggcaagatatttaaaaaaatatcaatgaattataatgtttcgaaca......................................................................................................................................................... Subject: aact_AA01173_AA01174|VapD-homolog:hypothetical protein|POSITIVE:POSITIVE|[804446,804839]|394 HSP 1 e-value: 1.0E-102 bit: 375.0 Len: 280 Query Start:113 Query End:392 Subject Strand: POSITIVE Subject Start: 89 Subject End: 369 ................................................................................................................cttggcttccctcgttcacgaggggagccgggcgaagccctgagggg-gcaaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaacagttatggtctcccgac......................................................................................................................................... ................................................................................................................cttggctcccctcgttcgcggggggagctgggcgaagccctgaggggggcaaaatctcaatttttaagcatgatcttgtgaatacatcgagataaattcccccttccgcccttcgggtacgttattcgcaagctcggaaactcacttgcttacccctttggggtcgttggcagaaccaacgctcaaaacgcattgcgttttgtcccccgtaaacggaggaaggcaagatattttaagatatcaataaattataatgtttcgaacagctgtggtttcccgac......................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 51 Query Start:48 Query End:98 Subject Strand: POSITIVE Subject Start: 31 Subject End: 81 ...............................................tagcccgcgtctcccgaccacagctgttcgaaaaattgtaactatttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................tagcgcgcgtttcctgaccacagctgttcgaaacattgtaactgtttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: aact_AA01167_AA01168|glucose-6-phosphate 1-dehydrogenase:6- phosphogluconolactonase|POSITIVE:POSITIVE|[801128, 801382]|255 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:213 Query End:320 Subject Strand: NEGATIVE Subject Start: 32 Subject End: 139 ....................................................................................................................................................................................................................ccttccgcccttcgggcacgttattcgcaagttcgaaaacttacttgctcacccctttggggtcgttggcagagccaacgctcaaaacgcaatgcgttttgtcccccg................................................................................................................................................................................................................. ....................................................................................................................................................................................................................ccttccgcccttcgggcacgttattcgcaagctcggaaactcacttactcacccctttggggtcgttggcagagccaacgctcaaaacgcattgcgttttgtcccccg................................................................................................................................................................................................................. Subject: aact_AA00726_AA00729|apolipoprotein N-acyltransferase, copper:possible hemolysin (TlyC-like)|POSITIVE:POSITIVE|[499947,500343]|397 HSP 1 e-value: 7.0E-33 bit: 143.0 Len: 119 Query Start:113 Query End:231 Subject Strand: POSITIVE Subject Start: 127 Subject End: 250 ................................................................................................................cttggcttccctcgttcacgaggggagccgggcgaagccctgagggggc-----aaaatctcaatttttaagcatgatcttgtggaaacatcaagataaatccccccttccgcccttcgggcac.......................................................................................................................................................................................................................................................................................................... ................................................................................................................cttggctcccctcgttcacagggggagctgggcgcagccctgagggggggggggaaaatctcaatttttaagcatgatcttgtgaaaaaatcaagataaatccccccttccgcccttcgggcac.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-25 bit: 117.0 Len: 59 Query Start:317 Query End:375 Subject Strand: POSITIVE Subject Start: 255 Subject End: 313 ............................................................................................................................................................................................................................................................................................................................cccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaac.......................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................cccgtaaacggaggaaggcaagatatttaaaaatatcaatgaattataatgtttcgaac.......................................................................................................................................................... HSP 3 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:64 Query End:98 Subject Strand: POSITIVE Subject Start: 78 Subject End: 112 ...............................................................accacagctgttcgaaaaattgtaactatttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................accacagctgttcgaaacattgtaactacttatat............................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: aact_AA02954_AA02955|penicillin tolerance protein; hydroxymethylbutenyl pyrophosphate reductase:trigger factor|POSITIVE:POSITIVE|[2066692,2067161]|470 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 63 Query Start:314 Query End:376 Subject Strand: POSITIVE Subject Start: 224 Subject End: 288 .........................................................................................................................................................................................................................................................................................................................tcccccgtaaacggaggaaggcaagata-ttta-aaaatatcaatgaattataatgtttcgaaca......................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................tcccccgtaaacggaagaaggcaagatactttataaaatatcaatgcattacaatttttcgaaca......................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 51 Query Start:134 Query End:184 Subject Strand: POSITIVE Subject Start: 130 Subject End: 180 .....................................................................................................................................ggggagccgggcgaagccctgagggggcaaaatctcaatttttaagcatga......................................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................ggggaaccggacgaaaccctgagagggcaaaatctcgatttttaagcatga......................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCAAUAGCGUUUGAGAUAGCGCUUAAUAGAUGGCAUUUAACAGAUAGCCCGCGUCUCCCGACCACAGCUGUUCGAAAAAUUGUAACUAUUUAUAUAAAAAGAAAAAAAACUUGGCUUCCCUCGUUCACGAGGGGAGCCGGGCGAAGCCCUGAGGGGGCAAAAUCUCAAUUUUUAAGCAUGAUCUUGUGGAAACAUCAAGAUAAAUCCCCCCUUCCGCCCUUCGGGCACGUUAUUCGCAAGUUCGAAAACUUACUUGCUCACCCCUUUGGGGUCGUUGGCAGAGCCAACGCUCAAAACGCAAUGCGUUUUGUCCCCCGUAAACGGAGGAAGGCAAGAUAUUUAAAAAUAUCAAUGAAUUAUAAUGUUUCGAACAGUUAUGGUCUCCCGACGCAUGCUUAUAUCACGUAAUAAUAUUAAUAAAUUAAAAUACAGCCGUCGGCUUUAACAACGAUAUUUCAGCUUUCAGCCCAUUUUCAAAGGCAGACUUACUAUUCGCCUUUCCCAUAUUCACCACAGGAAAAUAACU ..(((...((((((......)))))).....((((((........((((((..(((((....(((((.((((((((((((.((((((...((((((......(((.......((((((((((((((....))))))))))))))....((((.....))))....)))..(((((((((....((((((((....)).))))))..(((...((((((((((...)))).((((....((((((..........))))))..........((((.(((((((...)))))))..((((((((...))))))))..))))...))))..))))))...))).)))))))))....)))))))))))).)))))))))))).)))))....)))))..)))...)))..(((.((((........))))...))).))))))............))).((((.((.....))........((((((.((........))))))))................))))...... (-165.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUUAUUUUCCUGUGGUGAAUAUGGGAAAGGCGAAUAGUAAGUCUGCCUUUGAAAAUGGGCUGAAAGCUGAAAUAUCGUUGUUAAAGCCGACGGCUGUAUUUUAAUUUAUUAAUAUUAUUACGUGAUAUAAGCAUGCGUCGGGAGACCAUAACUGUUCGAAACAUUAUAAUUCAUUGAUAUUUUUAAAUAUCUUGCCUUCCUCCGUUUACGGGGGACAAAACGCAUUGCGUUUUGAGCGUUGGCUCUGCCAACGACCCCAAAGGGGUGAGCAAGUAAGUUUUCGAACUUGCGAAUAACGUGCCCGAAGGGCGGAAGGGGGGAUUUAUCUUGAUGUUUCCACAAGAUCAUGCUUAAAAAUUGAGAUUUUGCCCCCUCAGGGCUUCGCCCGGCUCCCCUCGUGAACGAGGGAAGCCAAGUUUUUUUUCUUUUUAUAUAAAUAGUUACAAUUUUUCGAACAGCUGUGGUCGGGAGACGCGGGCUAUCUGUUAAAUGCCAUCUAUUAAGCGCUAUCUCAAACGCUAUUGAUUA ......(((((((((.....)))))))))(((.(((((((..((.((((.(....).)))).))....((((((((.((((((......)))))).)))))))).........)))))))...(((((..(((.((((((....(((((((.((((((((((.(((.(((((.(((.((((....(((...((((.(((((..((((((((((((.((((((((...))))))))..(((((((...))))))).))))...((((.((((..(((((((....)))))))................(((((((((((((.(...((((..((.......((......)).......))..))))..).))))))......))))))).))))))))))))))))..))))).))))...)))........)))).)))))))).))).)))))))))).)))))))....)))))).)))...)))))...)))........((((..........))))........ (-178.24) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 973 160 111 202 154 aact:AA00862|5end_conserved_hypothetical_protein_596465..596695_POSITIVE 858 310 261 227 178 aact:AA01936|5end_tyrosyl-tRNA_synthetase_1307043..1307273_POSITIVE 791 294 255 133 94 aact:AA00240|5end_hypothetical_protein_171390..171620_POSITIVE 750 299 252 181 126 aact:AA00054|5end_cytochrome_c_biogenesis_protein_41393..41623_POSITIVE 695 310 261 213 165 aact:AA02220|5end_ABC_transport_system_permease_protein_1511155..1511385_POSITIVE 639 88 42 191 140 aact:AA00729|5end_possible_hemolysin_(TlyC-like)_500204..500434_POSITIVE 616 310 261 69 21 aact:AA01953|5end_hypothetical_protein_1320132..1320362_POSITIVE 611 160 113 164 118 aact:AA01422|5end_cell_division_protein_E,_ABC_system_ATP-binding_protein_956009..956239_POSITIVE 544 307 261 172 126 aact:AA01079|5end_conserved_hypothetical_protein_747404..747634_POSITIVE 534 160 117 173 132 aact:AA02949|5end_hypothetical_protein_2061944..2062174_POSITIVE 512 236 207 231 199 aact:AA01168|5end_6-phosphogluconolactonase_801243..801473_POSITIVE 496 80 43 143 107 aact:AA02453|5end_conserved_hypothetical_protein_1688947..1689177_POSITIVE 471 301 265 198 160 aact:AA01502|5end_serine_acetyltransferase_1010014..1010244_POSITIVE 427 282 261 231 210 aact:AA00096|5end_L-asparaginase_II_precursor_71280..71510_POSITIVE 422 72 36 159 118 aact:AA00235|5end_hypothetical_protein_168596..168826_POSITIVE 405 336 291 231 194 aact:AA01379|5end_glycerophosphoryl_diester_phosphodiesterase_(protein_D)_933029..933259_POSITIVE 403 78 33 65 7 aact:AA01565|5end_conserved_hypothetical_protein_1050711..1050941_POSITIVE 399 379 331 201 152 aact:AA00474|5end_cell_division_protein_Y_(GTP-binding_signal_recognition_particle)_330175..330405_POSITIVE 398 159 111 81 21 aact:AA00796|5end_iron(III)_dicitrate_transport_system_permease_protein_545686..545916_POSITIVE 390 160 111 147 71 aact:AA00525|5end_hypothetical_protein_359254..359484_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1034 320 271 59 10 aact:AA01167|3end_glucose-6-phosphate_1-dehydrogenase_801067..801217_POSITIVE 858 310 261 97 48 aact:AA01934|3end_conserved_hypothetical_protein_1306993..1307143_POSITIVE 791 294 255 81 42 aact:AA00239|3end_hypothetical_protein_171418..171568_POSITIVE 598 306 261 65 23 aact:AA00093|3end_L-serine_dehydratase_(L-serine_deaminase)_71173..71323_POSITIVE 544 307 261 141 95 aact:AA01078|3end_transcriptional_regulator_(probable_MerR_family)_747453..747603_POSITIVE 512 330 282 47 1 aact:AA00983|3end_aldo-keto_reductase_688492..688642_POSITIVE 509 400 351 50 1 aact:AA00861|3end_transcription_repair_coupling_factor_596150..596300_POSITIVE 496 80 43 42 6 aact:AA02451|3end_conserved_hypothetical_protein_1688926..1689076_POSITIVE 471 301 265 144 106 aact:AA01501|3end_hypothetical_protein_1010040..1010190_POSITIVE 460 243 210 66 32 aact:AA02947|3end_riboflavin_biosynthesis_protein_2061874..2062024_POSITIVE 449 291 255 39 4 aact:AA01880|3end_N-acetylglucosamine_repressor_1268383..1268533_POSITIVE 422 72 36 124 83 aact:AA00234|3end_collagen_adhesin_168641..168791_POSITIVE 398 159 111 78 18 aact:AA00795|3end_iron(III)_dicitrate-binding_periplasmic_protein_precursor_545763..545913_POSITIVE 373 320 278 43 1 aact:AA01811|3end_electron_transport_complex_protein_1221033..1221183_POSITIVE 373 68 21 111 67 aact:AA01366|3end_16S_rRNA_processing_protein_923721..923871_POSITIVE 373 399 355 59 12 aact:AA01173|3end_VapD-homolog_804385..804535_POSITIVE 371 334 291 63 10 aact:AA00332|3end_PTS_system,_fructose-specific_IIA/FPr_component_(diphosphoryl_transfer_protein)_225617..225767_POSITIVE 363 160 115 70 12 aact:AA00383|3end_chloride_channel_protein_260182..260332_POSITIVE 358 339 300 40 1 aact:AA01421|3end_phosphoglycolate_phosphatase_955806..955956_POSITIVE 358 379 333 115 68 aact:AA01271|3end_hypothetical_protein_863981..864131_POSITIVE