Origin IGS: aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctatggctgccagcgcttctccacaatgcgcagattacaaaattggggaatgtgttactggctgtttcgtacaaactttggttgcaaaatacacacttttaccggaacaggttgtatccaagtataatcacagaggacaaaatccctgagctgaagtcggaagcctaggcaacggtatttaaagggggaggggcagggagcataccagaataaaccggtaaccaaacaatattcgcaaatggtcttcaagaatgtggatgttattgaacatccgcagggggccatatctcaatttttagacaataccgtttatccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagaaaaatgaccgcactttgatctgcaccccaaaagttggacatcacacccaaccaattaaggtgcagatttttatgggcaaacattatacgactcatactgctattggtgtaggggcacgcgggtaaatattgcctcacgtatctccatcttacccatttctcgcattctcggtgtaagtcataactctggataaacggtattgtctaaaaattgagatatggccccctgcggatgttcaataacatccacattcttgaagaccatttgcgaatattgtttggttaccggtttattctggtatgctccctgcccctccccctttaaataccgttgcctaggcttccgacttcagctcagggattttgtcctctgtgattatacttggatacaacctgttccggtaaaagtgtgtattttgcaaccaaagtttgtacgaaacagccagtaacacattccccaattttgtaatctgcgcattgtggagaagcgctggcagccatagaaaattattttttaaattcgataaaaaaaagattgaaatggtgatattaaagtagtatcatcattaaaaatgatagaggaggtttttt Mask Tandem Repeat Region ================================================ aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctatggctgccagcgcttctccacaatgcgcagattacaaaattggggaatgtgttactggctgtttcgtacaaactttggttgcaaaatacacacttttaccggaacaggttgtatccaagtataatcacagaggacaaaatccctgagctgaagtcggaagcctaggcaacggtatttaaagggggaggggcagggagcataccagaataaaccggtaaccaaacaatattcgcaaatggtcttcaagaatgtggatgttattgaacatccgcagggggccatatctcaatttttagacaataccgtttatccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Find is-nt database================================================ Query_seq: AA00673:AA00674|AA00673:AA00674:hypothetical protein:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase:->->:461356..461949 594 aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctatggctgccagcgcttctccacaatgcgcagattacaaaattggggaatgtgttactggctgtttcgtacaaactttggttgcaaaatacacacttttaccggaacaggttgtatccaagtataatcacagaggacaaaatccctgagctgaagtcggaagcctaggcaacggtatttaaagggggaggggcagggagcataccagaataaaccggtaaccaaacaatattcgcaaatggtcttcaagaatgtggatgttattgaacatccgcagggggccatatctcaatttttagacaataccgtttatccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00673:AA00674|AA00673:AA00674:hypothetical protein:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase:->->:461356..461949 594 aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctatggctgccagcgcttctccacaatgcgcagattacaaaattggggaatgtgttactggctgtttcgtacaaactttggttgcaaaatacacacttttaccggaacaggttgtatccaagtataatcacagaggacaaaatccctgagctgaagtcggaagcctaggcaacggtatttaaagggggaggggcagggagcataccagaataaaccggtaaccaaacaatattcgcaaatggtcttcaagaatgtggatgttattgaacatccgcagggggccatatctcaatttttagacaataccgtttatccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00673:AA00674|AA00673:AA00674:hypothetical protein:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase:->->:461356..461949 594 aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctatggctgccagcgcttctccacaatgcgcagattacaaaattggggaatgtgttactggctgtttcgtacaaactttggttgcaaaatacacacttttaccggaacaggttgtatccaagtataatcacagaggacaaaatccctgagctgaagtcggaagcctaggcaacggtatttaaagggggaggggcagggagcataccagaataaaccggtaaccaaacaatattcgcaaatggtcttcaagaatgtggatgttattgaacatccgcagggggccatatctcaatttttagacaataccgtttatccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 91 Max: 401 Len: 311 Subject: UniRef90_Q6A258 Cluster: Putative exported protein; n=3; Haemophilus influenzae|Rep: Putative exported protein - Haemophilus influenzae HSP 1 e-value: 2.0E-8 bit: 61.2 Len: 267 Query Start:135 Query End:401 Subject Strand: null Subject Start: 48 Subject End: 137 ...................................................................................................................................... G M C Y W L F R T N F G C K I H T F T G T G C I - - Q V * S Q R T K S L S * S R K P R Q R Y L K G E G Q G A Y Q N K P V T K Q Y S Q M V F K N V D V I E H P Q G A I S Q F L D N T V Y ................................................................................................................................................................................................. ...................................................................................................................................... G T C F W L F C T K F G C K I R T S T K I K H Y I P E V V V S S Y N H Q A Q N P W V E M N F L S N G V K G G D Y Q S P - H K D Y T Q A T F K N V D V I G H P Q G A I S Q M L N S T G Y ................................................................................................................................................................................................. HSP 2 e-value: 8.0E-6 bit: 52.8 Len: 177 Query Start:91 Query End:267 Subject Strand: null Subject Start: 33 Subject End: 98 .......................................................................................... M A A S A S P Q C A D Y K - I G E C V - - - - - - T G C F V Q T L V A K Y T L L P E Q V V S K Y N H R G Q N P * A E V G S L G N G I ....................................................................................................................................................................................................................................................................................................................................... .......................................................................................... M A S S A S T S C L D Y K V V G T C F W L F C T K F G C K I R T S T K I K H Y I P E V V V S S Y N H Q A Q N P W V E M N F L S N G V ....................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_UPI000045D692 Cluster: hypothetical protein Haso02001135; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02001135 - Haemophilus somnus 2336 HSP 1 e-value: 2.0E-7 bit: 57.8 Len: 267 Query Start:135 Query End:401 Subject Strand: null Subject Start: 50 Subject End: 139 ...................................................................................................................................... G M C Y W L F R T N F G C K I H T F T G T G C I - - - Q V * S Q R T K S L S * S R K P R Q R Y L K G E G Q G A Y Q N K P V T K Q Y S Q M V F K N V D V I E H P Q G A I S Q F L D N T V Y ................................................................................................................................................................................................. ...................................................................................................................................... G T C F W L F C T Y F G C K V R T S T K I K H Y L P E M V V S S Y N H D G Q T P W T E L Q A L N P G V K G G E Y R S P Q - - R Q Y S Q L T F K N A D A F G H P Q G A I G Q L L G N T G Y ................................................................................................................................................................................................. Subject: UniRef90_Q0I5P4 Cluster: Hypothetical protein; n=1; Haemophilus somnus 129PT|Rep: Hypothetical protein - Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt)) HSP 1 e-value: 1.0E-5 bit: 52.4 Len: 195 Query Start:91 Query End:285 Subject Strand: null Subject Start: 32 Subject End: 103 .......................................................................................... M A A S A S P Q C A D Y K I - G E C V T - - - - - - G C F V Q T L V A K Y T L L P E Q V V S K Y N H R G Q N P * A E V G S L G N G I * R G R G R ..................................................................................................................................................................................................................................................................................................................... .......................................................................................... M A S S A S T G C L D Y K V V G T C F W L F C T Y F G C K V R T S T K V R H F L P E M V V S A Y N H D G Q N P W S E M N V V T Q G V K G G E Y R ..................................................................................................................................................................................................................................................................................................................... aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 81 End: 212 ................................................................................ M I F Y G C Q R F S T M R R L Q N W G M C Y W L F R T N F G C K I H T F T G T G C I Q V .............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 91 End: 234 .......................................................................................... M A A S A S P Q C A D Y K I G E C V T G C F V Q T L V A K Y T L L P E Q V V S K Y N H R G Q N P ........................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 44 End: 253 ........................................... M T I S I F F L S N L K N N F L W L P A L L H N A Q I T K L G N V L L A V S Y K L W L Q N T H F Y R N R L Y P S I I T E ..................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 391 End: 594 ...................................................................................................................................................................................................................................................................................................................................................................................................... M P F I Q S Y D L H R E C E K W V R W R Y V R Q Y L P A C P Y T N S S M S R I M F A H K N L H L N W L G V M S N F W G A Protein_Len: 36 Strand: - Start: 469 End: 576 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G R A G V G I A T H T T Y H K G M F I Q V K I P Q T H H G V K P T C I M .................. Protein_Len: 37 Strand: - Start: 270 End: 380 ............................................................................................................................................................................................................................................................................. L P L P L S C V L I F R Y G F L I R L H D E L I H I N N F M R L P G Y R M ...................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 146 End: 373 ................................................................................................................................................. V P Q I W T Y D C L V F D R L Q L R F G L C R Y K F P S P C P A Y W F L G T V L C Y E C I T K L F T S T I S C G C P A M ............................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 37 End: 162 .................................... K L I V M E I K K K D F K F F L K R H S G A S R W L A C I V F N P F T N S A T E Y M ................................................................................................................................................................................................................................................................................................................................................................................................................................................ aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 28 End: 57 ...........................ATTGAAATGGTGATATTAAAGTAGTATCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -8.2 Tail_Score: -3.61894 Start: 341 End: 364 Full_Region: tgagatatggccccc tgcggatgtt caat aacatccaca ttcttgaagaccatt ....................................................................................................................................................................................................................................................................................................................................................tgcggatgttcaataacatccaca...................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: AA00673:AA00674|AA00673:AA00674:hypothetical protein:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase:->->:461356..461949 594 aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta Intra-Species Hit: Count: 1 Min: 1 Max: 594 Len: 594 Subject: aact_AA00673_AA00674|hypothetical protein:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase|POSITIVE:POSITIVE|[461356, 461949]|594 HSP 1 e-value: 1.0E-105 bit: 383.0 Len: 193 Query Start:402 Query End:594 Subject Strand: POSITIVE Subject Start: 402 Subject End: 594 .................................................................................................................................................................................................................................................................................................................................................................................................................ccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta .................................................................................................................................................................................................................................................................................................................................................................................................................ccagagttatgacttacaccgagaatgcgagaaatgggtaagatggagatacgtgaggcaatatttacccgcgtgcccctacaccaatagcagtatgagtcgtataatgtttgcccataaaaatctgcaccttaattggttgggtgtgatgtccaacttttggggtgcagatcaaagtgcggtcatttttcta HSP 2 e-value: 1.0E-43 bit: 178.0 Len: 90 Query Start:1 Query End:90 Subject Strand: POSITIVE Subject Start: 1 Subject End: 90 aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aaaaaacctcctctatcatttttaatgatgatactactttaatatcaccatttcaatcttttttttatcgaatttaaaaaataattttct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAAACCUCCUCUAUCAUUUUUAAUGAUGAUACUACUUUAAUAUCACCAUUUCAAUCUUUUUUUUAUCGAAUUUAAAAAAUAAUUUUCUAUGGCUGCCAGCGCUUCUCCACAAUGCGCAGAUUACAAAAUUGGGGAAUGUGUUACUGGCUGUUUCGUACAAACUUUGGUUGCAAAAUACACACUUUUACCGGAACAGGUUGUAUCCAAGUAUAAUCACAGAGGACAAAAUCCCUGAGCUGAAGUCGGAAGCCUAGGCAACGGUAUUUAAAGGGGGAGGGGCAGGGAGCAUACCAGAAUAAACCGGUAACCAAACAAUAUUCGCAAAUGGUCUUCAAGAAUGUGGAUGUUAUUGAACAUCCGCAGGGGGCCAUAUCUCAAUUUUUAGACAAUACCGUUUAUCCAGAGUUAUGACUUACACCGAGAAUGCGAGAAAUGGGUAAGAUGGAGAUACGUGAGGCAAUAUUUACCCGCGUGCCCCUACACCAAUAGCAGUAUGAGUCGUAUAAUGUUUGCCCAUAAAAAUCUGCACCUUAAUUGGUUGGGUGUGAUGUCCAACUUUUGGGGUGCAGAUCAAAGUGCGGUCAUUUUUCUA ......(((((((.((((((......))))))....((((((....(((...........(((((((.......)))))))......((((.((((.((.((((...........)))).((((.((...(..((((...((((.(((...((((((...........((........))..........)))))).((((((((....)))))))).)))..))))...))))..)..)).)))))).))))))))....)))..))))))))))))).(.((((.((((............................((((((.(((((((((.....((((((((((....))))))))))))))))))).((((......(((((......)))))....((((....)))).....)))).))))))....(((((.((((..(...(....).)..)))))))))..)))))))).).....(((.((.((((.((((((.(((......)))....(((((((((((((..(((((((.......))))))).)))))))))))))....)))))))))).)).))) (-163.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAAAAAUGACCGCACUUUGAUCUGCACCCCAAAAGUUGGACAUCACACCCAACCAAUUAAGGUGCAGAUUUUUAUGGGCAAACAUUAUACGACUCAUACUGCUAUUGGUGUAGGGGCACGCGGGUAAAUAUUGCCUCACGUAUCUCCAUCUUACCCAUUUCUCGCAUUCUCGGUGUAAGUCAUAACUCUGGAUAAACGGUAUUGUCUAAAAAUUGAGAUAUGGCCCCCUGCGGAUGUUCAAUAACAUCCACAUUCUUGAAGACCAUUUGCGAAUAUUGUUUGGUUACCGGUUUAUUCUGGUAUGCUCCCUGCCCCUCCCCCUUUAAAUACCGUUGCCUAGGCUUCCGACUUCAGCUCAGGGAUUUUGUCCUCUGUGAUUAUACUUGGAUACAACCUGUUCCGGUAAAAGUGUGUAUUUUGCAACCAAAGUUUGUACGAAACAGCCAGUAACACAUUCCCCAAUUUUGUAAUCUGCGCAUUGUGGAGAAGCGCUGGCAGCCAUAGAAAAUUAUUUUUUAAAUUCGAUAAAAAAAAGAUUGAAAUGGUGAUAUUAAAGUAGUAUCAUCAUUAAAAAUGAUAGAGGAGGUUUUUU .....(((.((((.......((((((((((......(((((.........))))).......)))))))))).....(((((..........(((......(((...((((.(.(((((....(((((.....)))))..((((((((...(((((((...............)).))))).........(((((((......)))))))......))))))))))))).((.(((((((....))))))).)).......).))))...)))......))).((.((((((......))))))....)).))))).....((((((......((((((.((((((((.((....((.(((((((...)))).))).(((((((.((((.....(((......)))...(((((((((((((....))))))((((.....))))......)))))))..))))...))))))).)).....)).).))))).)))))))).........((((((((....((((((.........)))))).(((((((((((...)))))))))))..)))))))))))))).)))).))) (-152.78) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 756 580 531 53 4 aact:AA01176|5end_hypothetical_protein_806309..806539_POSITIVE 680 590 541 87 38 aact:AA02681|5end_hypothetical_protein_1865749..1865979_POSITIVE 669 586 541 142 91 aact:AA00145|5end_probable_degenerate_transposase_fragment_105046..105276_POSITIVE 606 590 541 137 93 aact:AA01075|5end_hypothetical_protein_745605..745835_POSITIVE 576 580 531 70 22 aact:AA02419|5end_hypothetical_protein_1661731..1661961_POSITIVE 570 546 505 231 190 aact:AA02630|5end_hypothetical_protein_1830296..1830526_POSITIVE 566 586 541 147 107 aact:AA01267|5end_degenerate_transposase_fragment_862267..862497_POSITIVE 523 584 541 131 93 aact:AA02340|5end_hypothetical_protein_1598887..1599117_POSITIVE 503 590 545 153 100 aact:AA02937|5end_conserved_hypothetical_protein_2056379..2056609_POSITIVE 463 570 523 117 78 aact:AA00008|5end_hypothetical_protein_(possible_transposase_fragment)_5032..5262_POSITIVE 459 584 541 47 2 aact:AA02629|5end_hypothetical_protein_1830072..1830302_POSITIVE 432 586 543 69 19 aact:AA01753|5end_conserved_hypothetical_protein_1185322..1185552_POSITIVE 423 589 541 139 86 aact:AA01287|5end_transposase_871583..871813_POSITIVE 409 590 559 228 197 aact:AA01779|5end_molybdenum_ABC_transporter,_ATP-binding_protein_1200036..1200266_POSITIVE 407 570 523 117 78 aact:AA02115|5end_hypothetical_protein_1444528..1444758_POSITIVE 401 575 532 125 78 aact:AA01444|5end_ISRS011/IS150_related_transposase,_orfB_969159..969389_POSITIVE 390 585 554 147 114 aact:AA00613|5end_lipid-A-disaccharide_synthase_418713..418943_POSITIVE 379 586 544 65 4 aact:AA00303|5end_thymidylate_kinase_(DTMP)_206107..206337_POSITIVE 357 277 232 78 15 aact:AA02700|5end_succinyl-CoA_synthase,_alpha_subunit_1883256..1883486_POSITIVE 356 290 246 59 22 aact:AA02935|5end_high-affinity_zinc_uptake_system_periplasmic_binding_protein_2054343..2054573_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 756 580 531 59 10 aact:AA01175|3end_6-phosphogluconate_dehydrogenase_806395..806545_POSITIVE 680 590 541 69 20 aact:AA02679|3end_formate_dehydrogenase,_gamma_subunit_1865811..1865961_POSITIVE 640 549 505 132 88 aact:AA02629|3end_hypothetical_protein_1830274..1830424_POSITIVE 606 590 541 75 31 aact:AA01074|3end_diacylglycerol_kinase_745623..745773_POSITIVE 576 580 531 70 22 aact:AA02418|3end_peptidyl-tRNA_hydrolase_1661811..1661961_POSITIVE 566 586 541 51 11 aact:AA01266|3end_hypothetical_protein_862251..862401_POSITIVE 523 584 541 49 11 aact:AA02338|3end_conserved_hypothetical_protein;_possible_integral_membrane_protein_1598885..1599035_POSITIVE 513 590 541 65 17 aact:AA00221|3end_NADP-specific_glutamate_dehydrogenase_153865..154015_POSITIVE 503 590 545 67 14 aact:AA02936|3end_lipoprotein_E_precursor;_outer_membrane_protein_P4_precursor;_acid_phosphatase_2056373..2056523_POSITIVE 463 570 523 72 33 aact:AA01402|3end_beta_1-4_glucosyltransferase_948382..948532_POSITIVE 463 570 523 60 21 aact:AA00007|3end_superoxide_dismutase_[Cu-Zn]_precursor_5055..5205_POSITIVE 457 586 549 41 6 aact:AA00629|3end_inosine_5'_monophosphate_dehydrogenase_(IMP_dehydrogenase)_433469..433619_POSITIVE 432 586 543 59 9 aact:AA01751|3end_conserved_hypothetical_protein_1185392..1185542_POSITIVE 409 590 559 77 46 aact:AA01778|3end_aminopeptidase_A/I;_cytosol_aminopeptidase;_leucyl_aminopeptidase_1199965..1200115_POSITIVE 407 570 523 79 40 aact:AA02114|3end_exodeoxyribonuclease_I_1444570..1444720_POSITIVE 401 575 532 79 32 aact:AA01442|3end_phosphatidylserine_synthetase_969193..969343_POSITIVE 390 585 554 59 26 aact:AA00612|3end_acyl-(acyl-carrier-protein)-UDP-N-acetylglucosami_ne_418705..418855_POSITIVE 381 290 246 76 18 aact:AA01987|3end_hypothetical_protein_1350620..1350770_POSITIVE 379 586 544 83 22 aact:AA00302|3end_DNA_polymerase_III,_delta'_subunit_206205..206355_POSITIVE 356 290 246 53 16 aact:AA02934|3end_hypothetical_protein_2054417..2054567_POSITIVE