Origin IGS: cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taattgataagacaaaccaaagtaaaactgaaaaggcgtatcgagaggtacgcctttttgtttatgaaatctttaataaatactatgctgtacttcctttttaattcattatacacgactaatttttattttaattctattaaataatcatttaagccgatttaccgtatttttcaatgtctgaatctgtatatcgttcagacgtgaataatagtccatattgtaacggtctaactttcagcaacacctcaagcctgataaaaccaatcattagttaaattaacaagttaatgtgcaggcaaaaaccgggggagtaggcaggtgacattatttatgcatagctatgctgactgtatttagccatagtcattgacctttactcctgtcaaattgtgggttgacgctgttccgctgagatccatatagcattgagtaaacaggcgttaggttcgaagattcactgcagacaaccgaagcggcttcagccttaggcaatttattactaatgatgtttgaagcgaaaaaatgtttttaaaataaatttatctttgttgtattgtggaagcctaaaccattacaataacgaaaagtaacactataacttggtaactaaacttgctaaaatccgtcctctagctctgggtactagccaactttctcagtttttcaaaaaaatcacaggggagaccagattatctacattactgcccttagagttaatatttagggcataaaactacctagtatttagttaactaattgaaaataaaagtgaaaagttttggatgagtgttctaacggagattcaaagttgaagtttaaaaagctttttattgcttacatagatggtttgaaaggtttttctaaggcgactaatgttagataatcacttaatagcgaggatttattgtgtgatcagaaaacataattgtatttccgatagatgaccccgccttcaatatcatttggttagggattaaagaggcagtaaagaagttggataatgttgattcagaaccggaaatcggcgatgaatcaatttatggttgattttcggagttgaaatgagggccgcacagaatttgggataaggacaaaagaaataatttacgctatatctgctaag Mask Tandem Repeat Region ================================================ cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Find is-nt database================================================ Query_seq: AA00562:AA00563|AA00562:AA00563:hypothetical protein:elongation factor Tu:->->:385521..386646 1126 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00562:AA00563|AA00562:AA00563:hypothetical protein:elongation factor Tu:->->:385521..386646 1126 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00562:AA00563|AA00562:AA00563:hypothetical protein:elongation factor Tu:->->:385521..386646 1126 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Predict ORF larger than 30AA ================================================ Protein_Len: 49 Strand: + Start: 87 End: 233 ...................................................................................... M D S S P I S G S E S T L S N F F T A S L I P N Q M I L K A G S S I G N T I M F S D H T I N P R Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 585 End: 680 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y F K N I F S L Q T S L V I N C L R L K P L R L S A V N L R T .............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 617 End: 757 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I S N K L P K A E A A S V V C S E S S N L T P V Y S M L Y G S Q R N S V N P Q F D R S K G Q ................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 856 End: 972 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I G F I R L E V L L K V R P L Q Y G L L F T S E R Y T D S D I E K Y G K S A .......................................................................................................................................................... Protein_Len: 38 Strand: + Start: 1011 End: 1124 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Y N E L K R K Y S I V F I K D F I N K K A Y L S I R L F S F T L V C L I N .. Protein_Len: 33 Strand: - Start: 1026 End: 1124 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F P L V A Y Y K N F I E Y V F L R V E R Y A K E T K S Q N T K D M .. Protein_Len: 47 Strand: - Start: 983 End: 1123 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K I S N F Y F N T T Y L S N F L F Y L M T N I L S K M F L F A Y R E I R R K L K V K T Q R I M ... Protein_Len: 34 Strand: - Start: 946 End: 1047 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V N F F V T F R S L H N N L L I L I F I L R T Y H I L F S T C C L M ............................................................................... Protein_Len: 33 Strand: - Start: 852 End: 950 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S I I P K I L S S T N S F T L G N C Y P S N N V D S R Y V S E S M ................................................................................................................................................................................ Protein_Len: 43 Strand: - Start: 396 End: 524 ........................................................................................................................................................................................................................................................................................................................................................................................................... A R F I L E L P L L T S L R T E G T I K K F F Q S L Q S T G L A L P R I K A L K T V M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 244 End: 345 ................................................................................................................................................................................................................................................... R V N T A K S F G K L G D I Y A I F L K K F K L K S D G N S C E D M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: - Start: 80 End: 202 ............................................................................... G Y I S E D G I E P E S D V N D L K K V A E K I G L W I I N F A P D D I P F V I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 40 HP_score: -2.1 Tail_Score: -2.60486 Start: 87 End: 121 Full_Region: GAAAATCAACCATAA ATTGATTCATCGCCG ATTTC CGGTTCTGAATCAAC ATTATCCAACTTCTT ......................................................................................ATTGATTCATCGCCGATTTCCGGTTCTGAATCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -11.0 Tail_Score: -3.93673 Start: 1067 End: 1098 Full_Region: aaaccaaagtaaaac tgaaaaggcgtatc gaga ggtacgcctttttg tttatgaaatcttta ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaaaggcgtatcgagaggtacgcctttttg............................ TransTerm Strand: + Conf: 81 HP_score: -7.8 Tail_Score: -4.4518 Start: 1073 End: 1092 Full_Region: TTTCATAAACAAAAA GGCGTACC TCTC GATACGCC TTTTCAGTTTTACTT ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTACCTCTCGATACGCC.................................. Find igs database================================================ Query_seq: AA00562:AA00563|AA00562:AA00563:hypothetical protein:elongation factor Tu:->->:385521..386646 1126 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Intra-Species Hit: Count: 1 Min: 1 Max: 1126 Len: 1126 Subject: aact_AA00562_AA00563|hypothetical protein:elongation factor Tu|POSITIVE:POSITIVE|[385521,386646]|1126 HSP 1 e-value: 0.0 bit: 2190.0 Len: 1126 Query Start:1 Query End:1126 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1126 cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgannnnnnngaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta cttagcagatatagcgtaaattatttcttttgtccttatcccaaattctgtgcggccctcatttcaactccgaaaatcaaccataaattgattcatcgccgatttccggttctgaatcaacattatccaacttctttactgcctctttaatccctaaccaaatgatattgaaggcggggtcatctatcggaaatacaattatgttttctgatcacacaataaatcctcgctattaagtgattatctaacattagtcgccttagaaaaacctttcaaaccatctatgtaagcaataaaaagctttttaaacttcaactttgaatctccgttagaacactcatccaaaacttttcacttttattttcaattagttaactaaatactaggtagttttatgccctaaatattaactctaagggcagtaatgtagataatctggtctcccctgtgatttttttgaaaaactgagaaagttggctagtacccagagctagaggacggattttagcaagtttagttaccaagttatagtgttacttttcgttattgtaatggtttaggcttccacaatacaacaaagataaatttattttaaaaacattttttcgcttcaaacatcattagtaataaattgcctaaggctgaagccgcttcggttgtctgcagtgaatcttcgaacctaacgcctgtttactcaatgctatatggatctcagcggaacagcgtcaacccacaatttgacaggagtaaaggtcaatgactatggctaaatacagtcagcatagctatgcataaataatgtcacctgcctactcccccggtttttgcctgcacattaacttgttaatttaactaatgattggttttatcaggcttgaggtgttgctgaaagttagaccgttacaatatggactattattcacgtctgaacgatatacagattcagacattgaaaaatacggtaaatcggcttaaatgattatttaatagaattaaaataaaaattagtcgtgtataatgaattaaaaaggaagtacagcatagtatttattaaagatttcataaacaaaaaggcgtacctctcgatacgccttttcagttttactttggtttgtcttatcaatta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUAGCAGAUAUAGCGUAAAUUAUUUCUUUUGUCCUUAUCCCAAAUUCUGUGCGGCCCUCAUUUCAACUCCGAAAAUCAACCAUAAAUUGAUUCAUCGCCGAUUUCCGGUUCUGAAUCAACAUUAUCCAACUUCUUUACUGCCUCUUUAAUCCCUAACCAAAUGAUAUUGAAGGCGGGGUCAUCUAUCGGAAAUACAAUUAUGUUUUCUGAUCACACAAUAAAUCCUCGCUAUUAAGUGAUUAUCUAACAUUAGUCGCCUUAGAAAAACCUUUCAAACCAUCUAUGUAAGCAAUAAAAAGCUUUUUAAACUUCAACUUUGAAUCUCCGUUAGAACACUCAUCCAAAACUUUUCACUUUUAUUUUCAAUUAGUUAACUAAAUACUAGGUAGUUUUAUGCCCUAAAUAUUAACUCUAAGGGCAGUAAUGUAGAUAAUCUGGUCUCCCCUGUGAUUUUUUUGAAAAACUGAGAAAGUUGGCUAGUACCCAGAGCUAGAGGACGGAUUUUAGCAAGUUUAGUUACCAAGUUAUAGUGUUACUUUUCGUUAUUGUAAUGGUUUAGGCUUCCACAAUACAACAAAGAUAAAUUUAUUUUAAAAACAUUUUUUCGCUUCAAACAUCAUUAGUAAUAAAUUGCCUAAGGCUGAAGCCGCUUCGGUUGUCUGCAGUGAAUCUUCGAACCUAACGCCUGUUUACUCAAUGCUAUAUGGAUCUCAGCGGAACAGCGUCAACCCACAAUUUGACAGGAGUAAAGGUCAAUGACUAUGGCUAAAUACAGUCAGCAUAGCUAUGCAUAAAUAAUGUCACCUGCCUACUCCCCCGGUUUUUGCCUGCACAUUAACUUGUUAAUUUAACUAAUGAUUGGUUUUAUCAGGCUUGAGGUGUUGCUGAAAGUUAGACCGUUACAAUAUGGACUAUUAUUCACGUCUGAACGAUAUACAGAUUCAGACAUUGAAAAAUACGGUAAAUCGGCUUAAAUGAUUAUUUAAUAGAAUUAAAAUAAAAAUUAGUCGUGUAUAAUGAAUUAAAAAGGAAGUACAGCAUAGUAUUUAUUAAAGAUUUCAUAAACAAAAAGGCGUACCUCUCGAUACGCCUUUUCAGUUUUACUUUGGUUUGUCUUAUCAAUUA .......((((.((..((((........))))..))))))..((((.((((((.(((((..((((......))))............(((((((((.(((((((((((((((.(((..((((((((..(((((.....(((((((....................(((((..(((((((......((((((((.(((....)))))))))))............))))))).....(((((((........)))))))....((((....))))................)))))...((((((....((((((((((....((((.(((.((....))...(((((....((((............((((....))))..(((((((.((((..((((((..............)))))).......)))).))))))).......))))...)))))...))).)))))))))))..)))....)))))).)))).)))....((((.......))))..)))))))))))))....)))..((((((((((((((((.(((.((((((((....((((((....))))))..............((((.(((((((((((((..(((((((....((((.(((((((.....(((((((((.((((((...((.......))...))))))...((.(.....).))....)))).)))))(((((........))))).(((((..((((...((((..(((((......)))))((((....)))).........))))...)))))))))..))))))).))))..(((......)))))))))))))))))))..))))....)))).....)))))).)).))))))))))))))))))).)))).....((((.((((((((........).)))))))..)))).....))).))))))))....(((((((.......................))))))).....)))))))))..)))..))...)))))).))))....(((((.(((.((((.((((((((((.(....).))))))))))..)))).....)))...)))))........ (-247.21) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUGAUAAGACAAACCAAAGUAAAACUGAAAAGGCGUAUCGAGAGGUACGCCUUUUUGUUUAUGAAAUCUUUAAUAAAUACUAUGCUGUACUUCCUUUUUAAUUCAUUAUACACGACUAAUUUUUAUUUUAAUUCUAUUAAAUAAUCAUUUAAGCCGAUUUACCGUAUUUUUCAAUGUCUGAAUCUGUAUAUCGUUCAGACGUGAAUAAUAGUCCAUAUUGUAACGGUCUAACUUUCAGCAACACCUCAAGCCUGAUAAAACCAAUCAUUAGUUAAAUUAACAAGUUAAUGUGCAGGCAAAAACCGGGGGAGUAGGCAGGUGACAUUAUUUAUGCAUAGCUAUGCUGACUGUAUUUAGCCAUAGUCAUUGACCUUUACUCCUGUCAAAUUGUGGGUUGACGCUGUUCCGCUGAGAUCCAUAUAGCAUUGAGUAAACAGGCGUUAGGUUCGAAGAUUCACUGCAGACAACCGAAGCGGCUUCAGCCUUAGGCAAUUUAUUACUAAUGAUGUUUGAAGCGAAAAAAUGUUUUUAAAAUAAAUUUAUCUUUGUUGUAUUGUGGAAGCCUAAACCAUUACAAUAACGAAAAGUAACACUAUAACUUGGUAACUAAACUUGCUAAAAUCCGUCCUCUAGCUCUGGGUACUAGCCAACUUUCUCAGUUUUUCAAAAAAAUCACAGGGGAGACCAGAUUAUCUACAUUACUGCCCUUAGAGUUAAUAUUUAGGGCAUAAAACUACCUAGUAUUUAGUUAACUAAUUGAAAAUAAAAGUGAAAAGUUUUGGAUGAGUGUUCUAACGGAGAUUCAAAGUUGAAGUUUAAAAAGCUUUUUAUUGCUUACAUAGAUGGUUUGAAAGGUUUUUCUAAGGCGACUAAUGUUAGAUAAUCACUUAAUAGCGAGGAUUUAUUGUGUGAUCAGAAAACAUAAUUGUAUUUCCGAUAGAUGACCCCGCCUUCAAUAUCAUUUGGUUAGGGAUUAAAGAGGCAGUAAAGAAGUUGGAUAAUGUUGAUUCAGAACCGGAAAUCGGCGAUGAAUCAAUUUAUGGUUGAUUUUCGGAGUUGAAAUGAGGGCCGCACAGAAUUUGGGAUAAGGACAAAAGAAAUAAUUUACGCUAUAUCUGCUAAG ...((((((.((......(((((((((..(((((((((((((....)))))))))))))((..(((((............(((......)))............)))))...)).........)))))))))...))))))))...........(((.(((.((.((((..((((.((((((((((.........))))))))))........((((.((((.(((((((((...(((((((..(((((...(((((......((........((...(((((....)))))..)).((......)).))....))))))))))((((((((((.((...((((((((((......)))).)))))).......((((((((((...((((((((((((((.((((((.((.((.....))....(((.(((((...(..((.....))..)...))))).))).......)).)))))).)))))))...)))))))...((((((((((((.((((((.....((((((((.......((((.((.((((((((..((((.........)))))))))))).)).)))).((((.((((.(((((((......))))))).....((((((..((((((((....((....))..)))))...................((....)).((((((((((((((...((((((((...((((((.(((...........)))))))))...((((((.........(((((.(....).)))))..(((((.(((....))).))))).)))))).......(((((((((((..(((.........))).)))))))))))))))))).)..))))).))))))))).......))))))))))))).)))).....)))))))).((((......)))).........)).))))))))))).)))))............))).)))))))..))))))))))))..........((((((((((((.(((((....))))).)))))))))))).)))))))...))))))........))).)))).))))....)))).....)))).)).))).)))... (-273.85) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 800 1120 1071 160 111 aact:AA00932|5end_ribose_ABC_transporter,_periplasmic_protein_643177..643407_POSITIVE 354 686 649 57 25 aact:AA01748|5end_thiol:disulfide_interchange_protein_1183062..1183292_POSITIVE 345 678 634 143 100 aact:AA01428|5end_acetolactate_synthase_958688..958918_POSITIVE 339 690 641 54 6 aact:AA01743|5end_lysyl-tRNA_synthetase_1177808..1178038_POSITIVE 339 690 641 100 45 aact:AA01224|5end_CTP_synthase_836221..836451_POSITIVE 338 675 631 196 146 aact:AA01780|5end_ABC-related_molybdenum_transport_system_permease_protein_1201084..1201314_POSITIVE 338 690 641 205 146 aact:AA00770|5end_outer_membrane_protein_precursor_530788..531018_POSITIVE 334 836 800 84 49 aact:AA00164|5end_dephospho-CoA_kinase_(dephosphocoenzyme_A_kinase)_116745..116975_POSITIVE 332 687 641 205 140 aact:AA00333|5end_1-phosphofructokinase;_tagatose-6-phosphate_kinase_225543..225773_POSITIVE 332 690 641 226 169 aact:AA00119|5end_ATP-dependent_Clp_protease_proteolytic_subunit_(endopeptidase_Clp)_88387..88617_POSITIVE 332 690 641 85 28 aact:AA00117|5end_hypothetical_protein_88246..88476_POSITIVE 328 190 141 196 148 aact:AA02386|5end_hypothetical_protein_1634546..1634776_POSITIVE 326 700 651 177 129 aact:AA00927|5end_ATP-dependent_DNA_helicase_635811..636041_POSITIVE 322 676 631 49 7 aact:AA02819|5end_DNA_polymerase_III,_psi_subunit_1981796..1982026_POSITIVE 322 845 806 204 157 aact:AA01626|5end_N_utilization_substance_protein_B_1100444..1100674_POSITIVE 321 669 633 42 1 aact:AA02821|5end_ribosomal-protein-alanine_acetyltransferase_1982255..1982485_POSITIVE 320 686 646 55 5 aact:AA02367|5end_conserved_hypothetical_protein_1623174..1623404_POSITIVE 320 689 641 54 12 aact:AA00804|5end_fumarate_reductase_flavoprotein_subunit_A_549770..550000_POSITIVE 320 690 641 195 126 aact:AA00052|5end_cytochrome_c-type_biogenesis_protein_precursor_40842..41072_POSITIVE 319 669 629 225 180 aact:AA01559|5end_RecA_regulatory_protein,_RecX_1045970..1046200_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 800 1120 1071 84 35 aact:AA00931|3end_elongation_factor_Tu_(tufA)_643181..643331_POSITIVE 354 686 649 45 13 aact:AA01747|3end_single-stranded-DNA-specific_exonuclease_1183130..1183280_POSITIVE 332 1116 1073 56 18 aact:AA00933|3end_ribose_ABC_transporter,_ATP-binding_protein_645197..645347_POSITIVE 320 686 646 53 3 aact:AA02366|3end_hypothetical_protein_1623252..1623402_POSITIVE 319 669 629 140 95 aact:AA01557|3end_recombinase_A_1045965..1046115_POSITIVE 317 730 684 142 102 aact:AA02946|3end_virulence_factor_protein_2060870..2061020_POSITIVE 317 245 202 105 56 aact:AA02780|3end_protein-export_membrane_protein_1944999..1945149_POSITIVE 316 689 641 146 82 aact:AA00350|3end_50S_ribosomal_protein_L10_234189..234339_POSITIVE 312 688 641 74 30 aact:AA01753|3end_conserved_hypothetical_protein_1185902..1186052_POSITIVE 311 734 693 42 4 aact:AA02320|3end_ABC_transporter_ATP-binding_protein_1585234..1585384_POSITIVE 311 729 686 89 31 aact:AA01829|3end_hypothetical_protein_1231662..1231812_POSITIVE 306 904 861 79 32 aact:AA01108|3end_hypothetical_protein_763983..764133_POSITIVE 304 688 645 97 45 aact:AA01656|3end_maltose/maltodextrin_transport_ATP-binding_protein_1122735..1122885_POSITIVE 304 1106 1072 55 26 aact:AA01345|3end_conserved_hypothetical_protein_(possible_membrane_protein)_913261..913411_POSITIVE 303 830 783 145 89 aact:AA01734|3end_DNA-binding_protein;_DPS_family_protein_1172602..1172752_POSITIVE 302 118 71 129 73 aact:AA01868|3end_biotin_synthetase_1256626..1256776_POSITIVE 302 664 632 147 117 aact:AA00804|3end_fumarate_reductase_flavoprotein_subunit_A_551655..551805_POSITIVE 301 677 631 54 11 aact:AA00374|3end_short-chain_fatty_acids_transporter_253101..253251_POSITIVE 300 689 647 96 51 aact:AA01573|3end_peptide_transport_periplasmic_protein_1061454..1061604_POSITIVE 300 677 632 56 5 aact:AA01247|3end_hypothetical_protein_849944..850094_POSITIVE