Origin IGS: taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agtaaatgcctttttaataagatgaatttataccagaatcagggcggacgataaaaaggacgaacacaggtttgaacaaacctgtgctgcttttttattctctttcatccagactgtcactgtcggctttggattcgcaccaaatctgctgactttatcgaaaaaacgccgtcaaaaacgaccgcacttttgtcgataaacgctcgtgggcttgcattgaaacattccttcatgcttaccaccggtagggactttcaccctgccctgagaatgcgcgcctagtatagcgcaaagggactggtgttaaaatcggtttttggcacacaaggacaatttaacgcgtctaatacgagttaatcggcataactctactcagctctaaaaaaatttccaaaagctatttcaaatagcccaatgagagaatgaagtacgaacaagagttgttggtagcctaacgttaattcgcaaaagttaattcaaattttcaatcatggaaaattttagggaaaatccaccaaaatgaaccaaaagaaatacctttaaccctatattaccaggctaggcatgttattttactgcaagttaaaattcagtttcaggttttgtgcaactgctacagaatattgggtgaatttaaaaaacgccgaagaaagtgaccgcacttttttgctaattaggatta Mask Tandem Repeat Region ================================================ taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Find is-nt database================================================ Query_seq: AA00470:AA00471|AA00470:AA00471:conserved hypothetical protein (possible Zn-dependent protease with chaperone function):3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrase II:->->:327720..328401 682 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00470:AA00471|AA00470:AA00471:conserved hypothetical protein (possible Zn-dependent protease with chaperone function):3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrase II:->->:327720..328401 682 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00470:AA00471|AA00470:AA00471:conserved hypothetical protein (possible Zn-dependent protease with chaperone function):3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrase II:->->:327720..328401 682 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 3 End: 107 .. M L I S K K V R S L S S A F F K F T Q Y S V A V A Q N L K L N F N L Q ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 207 End: 311 .............................................................................................................................................................................................................. M N F C E L T L G Y Q Q L L F V L H S L I G L F E I A F G N F F R A E ................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 349 End: 444 ............................................................................................................................................................................................................................................................................................................................................................ M V L V C Q K P I L T P V P L R Y T R R A F S G Q G E S P Y R W .............................................................................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 398 End: 508 ............................................................................................................................................................................................................................................................................................................................................................................................................. M L G A H S Q G R V K V P T G G K H E G M F Q C K P T S V Y R Q K C G R F .............................................................................................................................................................................. Protein_Len: 41 Strand: + Start: 441 End: 563 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V S M K E C F N A S P R A F I D K S A V V F D G V F S I K S A D L V R I Q S R Q ....................................................................................................................... Protein_Len: 30 Strand: + Start: 563 End: 652 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M T V W M K E N K K A A Q V C S N L C S S F L S S A L I L V .............................. Protein_Len: 40 Strand: - Start: 534 End: 653 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C I Q H S D L A S L S L R S S L S Y F L L V P K N L G T N T R K I T R G S E P M ............................. Protein_Len: 57 Strand: - Start: 487 End: 657 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R C F H P R K Q R R K K S L T L L N P A F G F G V T V T Q I F S F L F A A C T Q E F R H E D K K D D A R I R T Y M ......................... Protein_Len: 60 Strand: - Start: 404 End: 601 ................................................................................................................................................................................................................................................................................................................................................................................................................... P H F D R G T T L M F S H K L A L G R A N I S L L A T T K S P T K E I F D A S K T R I W L R C H C D P H F L I F F C C M ................................................................................. Protein_Len: 52 Strand: - Start: 30 End: 185 ............................. K R R R K K F E G L I R Y C N C L V Q F Q I K V Q L L I V H R A Q Y Y L T L P I E K P E N Q H I K G L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: - Start: 2 End: 133 . I R I L L F T R D S E E A N K L N V W Y E T A T A C F R F S F K L K C Y F L M G L R T M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 76 HP_score: -7.2 Tail_Score: -4.21787 Start: 272 End: 286 Full_Region: TCATTCTCTCATTGG GCTATT TGA AATAGC TTTTGGAAATTTTTT ...............................................................................................................................................................................................................................................................................GCTATTTGAAATAGC............................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 50 HP_score: -4.9 Tail_Score: -2.74931 Start: 326 End: 348 Full_Region: GTAGAGTTATGCCGA TTAACTCGT ATTAG ACGCGTTAA ATTGTCCTTGTGTGC .....................................................................................................................................................................................................................................................................................................................................TTAACTCGTATTAGACGCGTTAA.............................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -5.4 Tail_Score: -5.66338 Start: 593 End: 621 Full_Region: gacgataaaaaggac gaacacaggttt gaac aaacctgtgctgc ttttttattctcttt ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaacacaggtttgaacaaacctgtgctgc............................................................. TransTerm Strand: - Conf: 81 HP_score: -11.7 Tail_Score: -2.70342 Start: 597 End: 618 Full_Region: gataaaaaggacgaa cacaggttt gaac aaacctgtg ctgcttttttattct ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacaggtttgaacaaacctgtg................................................................ TransTerm Strand: + Conf: 86 HP_score: -11.7 Tail_Score: -3.43187 Start: 597 End: 618 Full_Region: AGAATAAAAAAGCAG CACAGGTTT GTTC AAACCTGTG TTCGTCCTTTTTATC ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGTTTGTTCAAACCTGTG................................................................ Find igs database================================================ Query_seq: AA00470:AA00471|AA00470:AA00471:conserved hypothetical protein (possible Zn-dependent protease with chaperone function):3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrase II:->->:327720..328401 682 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Intra-Species Hit: Count: 1 Min: 1 Max: 682 Len: 682 Subject: aact_AA00470_AA00471|conserved hypothetical protein (possible Zn-dependent protease with chaperone function):3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrase II|POSITIVE:POSITIVE|[327720,328401]|682 HSP 1 e-value: 0.0 bit: 1310.0 Len: 682 Query Start:1 Query End:682 Subject Strand: POSITIVE Subject Start: 1 Subject End: 682 taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaannnnnnnagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact taatcctaattagcaaaaaagtgcggtcactttcttcggcgttttttaaattcacccaatattctgtagcagttgcacaaaacctgaaactgaattttaacttgcagtaaaataacatgcctagcctggtaatatagggttaaaggtatttcttttggttcattttggtggattttccctaaaattttccatgattgaaaatttgaattaacttttgcgaattaacgttaggctaccaacaactcttgttcgtacttcattctctcattgggctatttgaaatagcttttggaaatttttttagagctgagtagagttatgccgattaactcgtattagacgcgttaaattgtccttgtgtgccaaaaaccgattttaacaccagtccctttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaagcatgaaggaatgtttcaatgcaagcccacgagcgtttatcgacaaaagtgcggtcgtttttgacggcgttttttcgataaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataaaaaagcagcacaggtttgttcaaacctgtgttcgtcctttttatcgtccgccctgattctggtataaattcatcttattaaaaaggcatttact Inter-species Hit: Count: 2 Min: 390 Max: 588 Len: 199 Subject: NC_002663_PM1385_PM1386|3,4-dihydroxy-2-butanone 4-phosphate synthase:hypothetical protein|NEGATIVE:NEGATIVE|[1581939,1582228]|290 HSP 1 e-value: 8.0E-18 bit: 93.7 Len: 63 Query Start:526 Query End:588 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 180 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaataa.............................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagtcagcagatttggtgagaatccaaagccgacagt-atagtctggatgaaagagaataa.............................................................................................. HSP 2 e-value: 2.0E-12 bit: 75.8 Len: 58 Query Start:390 Query End:447 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 289 .....................................................................................................................................................................................................................................................................................................................................................................................................tttgcgctatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaa........................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................tttgcgttatactatttgcgcattctcagggcagggtgaaattccctaccggtggtaa........................................................................................................................................................................................................................................... Subject: NC_008309_HS_0088_HS_0089|hypothetical protein:3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)|NEGATIVE:POSITIVE|[82027,82322]|296 HSP 1 e-value: 3.0E-17 bit: 91.7 Len: 58 Query Start:530 Query End:587 Subject Strand: POSITIVE Subject Start: 128 Subject End: 185 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcagcagatttggtgcgaatccaaagccgacagtgacagtctggatgaaagagaata............................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcagcagatttggtgaaaatccaaagccgacagtgatagtctggatgaaagagaata............................................................................................... HSP 2 e-value: 5.0E-13 bit: 77.8 Len: 51 Query Start:397 Query End:447 Subject Strand: POSITIVE Subject Start: 34 Subject End: 84 ............................................................................................................................................................................................................................................................................................................................................................................................................tatactaggcgcgcattctcagggcagggtgaaagtccctaccggtggtaa........................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................tatactatgcacgcattctcagggcagggtgaaattccctaccggtggtaa........................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGCGCUAUACUAGGCGCGCAUUCUCAGGGCAGGGUGAAAGUCCCUACCGGUGGUAAGCAUGAAGGAAUGUUUCAAUGCAAGCCCACGAGCGUUUAUCGACAAAAGUGCGGUCGUUUUUGACGGCGUUUUUUCGAUAAAGUCAGCAGAUUUGGUGCGAAUCCAAAGCCGACAGUGACAGUCUGGAUGAAAGAGAAUAA ...(((((......)))))..((((((.((((.((((....).)))............((((((((.....)))).))))..)))).((..(..(((((((.((((((((.((((....)))).))))))))))))))).(((.((...(((((.......))))))).))).......)..)).......)))))).. (-60.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUUCUCUUUCAUCCAGACUGUCACUGUCGGCUUUGGAUUCGCACCAAAUCUGCUGACUUUAUCGAAAAAACGCCGUCAAAAACGACCGCACUUUUGUCGAUAAACGCUCGUGGGCUUGCAUUGAAACAUUCCUUCAUGCUUACCACCGGUAGGGACUUUCACCCUGCCCUGAGAAUGCGCGCCUAGUAUAGCGCAAA .(((((((...................(((((((((((.......)))))...)))))).(((((((.((((.((.(((......))).))..)))).)))))))......((((....((((.(((.......)))))))...)))).(((((((.......)))))))..))))))).((((........))))... (-58.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 492 130 83 125 72 aact:AA01059|5end_orotate_phosphoribosyltransferase_735052..735282_POSITIVE 471 130 82 208 161 aact:AA01284|5end_heat_shock_protein_(hsp60)_868574..868804_POSITIVE 451 146 102 184 142 aact:AA02509|5end_chorismate_synthase_1740952..1741182_POSITIVE 442 130 81 62 6 aact:AA00582|5end_conserved_hypothetical_protein_397904..398134_POSITIVE 428 130 81 119 80 aact:AA02097|5end_DedA-family_integral_membrane_protein_1428823..1429053_POSITIVE 428 130 81 50 11 aact:AA02096|5end_hypothetical_protein_1428754..1428984_POSITIVE 416 140 91 150 94 aact:AA00378|5end_leucine-responsive_regulatory_protein_(transcription_regulator)_254324..254554_POSITIVE 413 128 85 91 46 aact:AA00384|5end_conserved_hypothetical_protein_(possible_nitrogen_fixation_protein)_260108..260338_POSITIVE 409 130 87 154 113 aact:AA02348|5end_bacterioferritin_comigratory_protein_1606772..1607002_POSITIVE 409 120 75 196 151 aact:AA01175|5end_6-phosphogluconate_dehydrogenase_804864..805094_POSITIVE 407 143 103 185 143 aact:AA03003|5end_GTP-binding_membrane_protein_2096544..2096774_POSITIVE 407 143 103 64 22 aact:AA03002|5end_hypothetical_protein_2096423..2096653_POSITIVE 407 139 92 193 139 aact:AA02410|5end_cell_division_protein_1655429..1655659_POSITIVE 406 135 93 228 191 aact:AA01598|5end_conserved_hypothetical_protein_1078954..1079184_POSITIVE 406 130 84 181 137 aact:AA00501|5end_hypothetical_protein_347293..347523_POSITIVE 403 130 83 120 79 aact:AA00198|5end_conserved_hypothetical_protein_(Cytosine_deaminase-related_enzyme)_138039..138269_POSITIVE 400 143 103 185 151 aact:AA01151|5end_porphobilinogen_synthase_(delta-aminolevulinic_acid_dehydratase)_788323..788553_POSITIVE 397 142 103 187 141 aact:AA00511|5end_nicotinamide_mononucleotide_transporter_353884..354114_POSITIVE 394 131 98 77 43 aact:AA01998|5end_16S_rRNA_pseudouridine_synthase_1356842..1357072_POSITIVE 394 130 82 183 119 aact:AA01991|5end_conserved_hypothetical_protein_(possible_nitroreductase)_1352372..1352602_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 471 130 82 84 37 aact:AA01280|3end_groES_chaperonin_868530..868680_POSITIVE 420 132 99 42 12 aact:AA01057|3end_DnaJ-like_protein_djlA_735047..735197_POSITIVE 415 135 102 151 117 aact:AA02507|3end_penicillin-insensitive_murein_endopeptidase_A_1741007..1741157_POSITIVE 413 128 85 85 40 aact:AA00383|3end_chloride_channel_protein_260182..260332_POSITIVE 410 130 88 44 2 aact:AA00581|3end_thiosulfate_sulfurtransferase_(rhodanese)_397966..398116_POSITIVE 409 130 87 84 43 aact:AA02347|3end_immunoglobulin_A1_protease_precursor_1606782..1606932_POSITIVE 407 143 103 48 6 aact:AA03001|3end_probable_glycyl_radical_protein/pyruvate-formate_lyase_2096487..2096637_POSITIVE 407 139 92 88 34 aact:AA02409|3end_DNA_ligase_1655404..1655554_POSITIVE 406 135 93 130 93 aact:AA01597|3end_oligoribonuclease_1078936..1079086_POSITIVE 406 130 84 87 43 aact:AA00499|3end_pyridoxamine-5'-phosphate_oxidase_347279..347429_POSITIVE 406 140 99 46 2 aact:AA00377|3end_acetyl-CoA_acetyltransferase_(Beta-ketothiolase,3-ketoacyl-CoA_thiolase)_254300..254450_POSITIVE 397 142 103 106 60 aact:AA00508|3end_SAM-dependent_methyltransferase_353883..354033_POSITIVE 386 130 81 126 62 aact:AA01384|3end_hypothetical_protein_935540..935690_POSITIVE 375 67 25 46 3 aact:AA00740|3end_citrate_lyase_related_biosynthesis_protein_(2-(5'-triphosphoribosyl)-3'-dephosphocoenzyme-A_synthase)_506749..506899_POSITIVE 373 130 81 89 21 aact:AA01019|3end_conserved_hypothetical_protein_712719..712869_POSITIVE 373 136 91 83 26 aact:AA00221|3end_NADP-specific_glutamate_dehydrogenase_153865..154015_POSITIVE 372 130 81 70 32 aact:AA01557|3end_recombinase_A_1045965..1046115_POSITIVE 370 127 82 65 25 aact:AA01537|3end_possible_glucokinase_regulatory_protein_1031607..1031757_POSITIVE 369 147 104 110 72 aact:AA02175|3end_anthranilate_synthase_component_II_1488966..1489116_POSITIVE 369 130 85 84 35 aact:AA02142|3end_outer_membrane_protein_OprM_precursor_1467532..1467682_POSITIVE