Origin IGS: tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctcctgacataaacaaatccttctactacctcaccggaagcatcgattctaaaacggcattttgttacatagcggaacaattaaaaaaacacttccataaaaaagcaagtgaagaacaaattttctaagcaatttaataaattagtaatgtactgacagaacacggcacctttaattttatttttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaaggattgagcccgatacaatactgagctcaatatttaagttaactaacctgtccaactttttgggggggcagatcactttctatttgtattatttggccttacatcgctttctcagctcccaatgtacttagtggcacagcgacattcttcgttagaaaaataaaattaaaggtgccgtgttctgtcagtacattactaatttattaaattgcttagaaaatttgttcttcacttgcttttttatggaagtgtttttttaattgttccgctatgtaacaaaatgccgttttagaatcgatgcttccggtgaggtagtagaaggatttgtttatgtcaggagactacacaaatctgtttctaacctttacttagcataaccacacaatgagttcagatttaacactataatttggtgaatttcaacatttgcacactgggtattattagatcaagcttgttggttttataatggattcggctaaaaaaaatgaccgcacttttgaagcaaaagtgcggtcggttcttgagttaaatttgaatca Mask Tandem Repeat Region ================================================ tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctcctgacataaacaaatccttctactacctcaccggaagcatcgattctaaaacggcattttgttacatagcggaacaattaaaaaaacacttccataaaaaagcaagtgaagaacaaattttctaagcaatttaataaattagtaatgtactgacagaacacggcacctttaattttatttttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Find is-nt database================================================ Query_seq: AA00223:AA00226|AA00223:AA00226:catalase (hydroperoxidase; iron heme axial ligand):hypothetical protein:->->:155869..156415 547 tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctcctgacataaacaaatccttctactacctcaccggaagcatcgattctaaaacggcattttgttacatagcggaacaattaaaaaaacacttccataaaaaagcaagtgaagaacaaattttctaagcaatttaataaattagtaatgtactgacagaacacggcacctttaattttatttttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: AA00223:AA00226|AA00223:AA00226:catalase (hydroperoxidase; iron heme axial ligand):hypothetical protein:->->:155869..156415 547 tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctcctgacataaacaaatccttctactacctcaccggaagcatcgattctaaaacggcattttgttacatagcggaacaattaaaaaaacacttccataaaaaagcaagtgaagaacaaattttctaagcaatttaataaattagtaatgtactgacagaacacggcacctttaattttatttttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: AA00223:AA00226|AA00223:AA00226:catalase (hydroperoxidase; iron heme axial ligand):hypothetical protein:->->:155869..156415 547 tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctcctgacataaacaaatccttctactacctcaccggaagcatcgattctaaaacggcattttgttacatagcggaacaattaaaaaaacacttccataaaaaagcaagtgaagaacaaattttctaagcaatttaataaattagtaatgtactgacagaacacggcacctttaattttatttttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 5 Min: 205 Max: 384 Len: 180 Subject: UniRef90_Q0I4P3 Cluster: Hypothetical protein; n=2; Histophilus somni|Rep: Hypothetical protein - Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt)) HSP 1 e-value: 2.0E-9 bit: 64.7 Len: 180 Query Start:205 Query End:384 Subject Strand: null Subject Start: 115 Subject End: 174 ............................................................................................................................................................................................................ P D I N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F * A I * * I S N V L T E H G T F N F I ................................................................................................................................................................... ............................................................................................................................................................................................................ P D M T E S L F Q P I G S T D S E T A F C Y M L S Q L K K R F P K K P N E Q D M F S A I Q K L T Q E L T Q R G T F N F I ................................................................................................................................................................... Subject: UniRef90_P44098 Cluster: Putative glutamine amidotransferase HI1037; n=5; Pasteurellaceae|Rep: Putative glutamine amidotransferase HI1037 - Haemophilus influenzae HSP 1 e-value: 5.0E-9 bit: 63.2 Len: 180 Query Start:205 Query End:384 Subject Strand: null Subject Start: 131 Subject End: 190 ............................................................................................................................................................................................................ P D I N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F * A I * * I S N V L T E H G T F N F I ................................................................................................................................................................... ............................................................................................................................................................................................................ P D M T D H F L Q P I G S T D S E A A F C Y M A E Y L K N T F R K K P S E M E I F E A I Q K V T K G L A Q H G T F N F I ................................................................................................................................................................... Subject: UniRef90_Q3EDZ3 Cluster: Glutamine amidotransferase; n=1; Actinobacillus succinogenes 130Z|Rep: Glutamine amidotransferase - Actinobacillus succinogenes 130Z HSP 1 e-value: 2.0E-7 bit: 57.8 Len: 180 Query Start:205 Query End:384 Subject Strand: null Subject Start: 42 Subject End: 101 ............................................................................................................................................................................................................ P D I N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F * A I * * I S N V L T E H G T F N F I ................................................................................................................................................................... ............................................................................................................................................................................................................ P D L S G C Y C R P I G S T D S E A A F C Y I A D Q L K K R Y C S K P S E D E I F G I I Q E I T L E L G R Y G T F N F I ................................................................................................................................................................... Subject: UniRef90_Q9CPJ9 Cluster: Hypothetical protein PM0038; n=1; Pasteurella multocida|Rep: Hypothetical protein PM0038 - Pasteurella multocida HSP 1 e-value: 3.0E-7 bit: 57.0 Len: 180 Query Start:205 Query End:384 Subject Strand: null Subject Start: 115 Subject End: 174 ............................................................................................................................................................................................................ P D I N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F * A I * * I S N V L T E H G T F N F I ................................................................................................................................................................... ............................................................................................................................................................................................................ P D L T H S L Y Q P I G S T D S E A A F C Y M M S E L K T R F A Q K P S E D E L F T S M Q D I T H S L C Q T G T F N F I ................................................................................................................................................................... Subject: UniRef90_Q65UY2 Cluster: Hypothetical protein; n=1; Mannheimia succiniciproducens MBEL55E|Rep: Hypothetical protein - Mannheimia succiniciproducens (strain MBEL55E) HSP 1 e-value: 4.0E-7 bit: 56.6 Len: 180 Query Start:205 Query End:384 Subject Strand: null Subject Start: 115 Subject End: 174 ............................................................................................................................................................................................................ P D I N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F * A I * * I S N V L T E H G T F N F I ................................................................................................................................................................... ............................................................................................................................................................................................................ P D L S S C Y C T P I G D T D S E A A F C Y I A A K L K E R F C R K P T E N E I F D T I K E L A A E L A Q H G T F N F I ................................................................................................................................................................... tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 211 End: 327 .................................................................................................................................................................................................................. M N K S F Y Y L T G S I D S K T A F C Y I A E Q L K K H F H K K A S E E Q I F ............................................................................................................................................................................................................................ Protein_Len: 33 Strand: + Start: 343 End: 441 ...................................................................................................................................................................................................................................................................................................................................................... M S N V L T E H G T F N F I F L T K N V A V P L S T L G A E K A M .......................................................................................................... Protein_Len: 42 Strand: - Start: 415 End: 540 .............................................................................................................................................................................................................................................................................................................................................................................................................................. T C Q S S L F R H L A L Y Y L Y F T I Q G G L F N S L N T L K F I S S L I T D P E M ....... Protein_Len: 41 Strand: - Start: 339 End: 461 .................................................................................................................................................................................................................................................................................................................................................. Y I L L T S V S C P V K L K I K R V F F T A T G S L V N P A S F A I Y P W I I C M ...................................................................................... Protein_Len: 31 Strand: - Start: 286 End: 378 ............................................................................................................................................................................................................................................................................................. F F V E M F F C T F F L N E L C N L L N T I Y Q C F V A G K M ......................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 169 End: 282 ........................................................................................................................................................................ A L Y L N S V S K H L R R V Y V F G E V V E G S A D I R F R C K T V Y R F M ......................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 3 End: 95 .. N L N L E L V S R V K A E F T R D N K K A S D M I F G V L K M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 119 End: 148 ......................................................................................................................GTTGAAATTCACCAAATTATAGTGTTAAAT............................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -15.7 Tail_Score: -3.74184 Start: 23 End: 55 Full_Region: attcggctaaaaaaa atgaccgcacttttg aag caaaagtgcggtcgg ttcttgagttaaatt ......................atgaccgcacttttgaagcaaaagtgcggtcgg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -19.2 Tail_Score: -2.83788 Start: 24 End: 54 Full_Region: ttcggctaaaaaaaa tgaccgcacttttg aag caaaagtgcggtcg gttcttgagttaaat .......................tgaccgcacttttgaagcaaaagtgcggtcg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: AA00223:AA00226|AA00223:AA00226:catalase (hydroperoxidase; iron heme axial ligand):hypothetical protein:->->:155869..156415 547 tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Intra-Species Hit: Count: 1 Min: 1 Max: 547 Len: 547 Subject: aact_AA00223_AA00226|catalase (hydroperoxidase; iron heme axial ligand):hypothetical protein|POSITIVE:POSITIVE|[155869,156415]|547 HSP 1 e-value: 3.0E-97 bit: 357.0 Len: 204 Query Start:1 Query End:204 Subject Strand: POSITIVE Subject Start: 1 Subject End: 204 tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcannnnnnnnagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtct....................................................................................................................................................................................................................................................................................................................................................... tgattcaaatttaactcaagaaccgaccgcacttttgcttcaaaagtgcggtcattttttttagccgaatccattataaaaccaacaagcttgatctaataatacccagtgtgcaaatgttgaaattcaccaaattatagtgttaaatctgaactcattgtgtggttatgctaagtaaaggttagaaacagatttgtgtagtct....................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-74 bit: 281.0 Len: 163 Query Start:385 Query End:547 Subject Strand: POSITIVE Subject Start: 385 Subject End: 547 ................................................................................................................................................................................................................................................................................................................................................................................................tttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgnnnnnnnaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta ................................................................................................................................................................................................................................................................................................................................................................................................tttctaacgaagaatgtcgctgtgccactaagtacattgggagctgagaaagcgatgtaaggccaaataatacaaatagaaagtgatctgcccccccaaaaagttggacaggttagttaacttaaatattgagctcagtattgtatcgggctcaatcctttta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUCAAAUUUAACUCAAGAACCGACCGCACUUUUGCUUCAAAAGUGCGGUCAUUUUUUUUAGCCGAAUCCAUUAUAAAACCAACAAGCUUGAUCUAAUAAUACCCAGUGUGCAAAUGUUGAAAUUCACCAAAUUAUAGUGUUAAAUCUGAACUCAUUGUGUGGUUAUGCUAAGUAAAGGUUAGAAACAGAUUUGUGUAGUCUCCUGACAUAAACAAAUCCUUCUACUACCUCACCGGAAGCAUCGAUUCUAAAACGGCAUUUUGUUACAUAGCGGAACAAUUAAAAAAACACUUCCAUAAAAAAGCAAGUGAAGAACAAAUUUUCUAAGCAAUUUAAUAAAUUAGUAAUGUACUGACAGAACACGGCACCUUUAAUUUUAUUUUUCUAACGAAGAAUGUCGCUGUGCCACUAAGUACAUUGGGAGCUGAGAAAGCGAUGUAAGGCCAAAUAAUACAAAUAGAAAGUGAUCUGCCCCCCCAAAAAGUUGGACAGGUUAGUUAACUUAAAUAUUGAGCUCAGUAUUGUAUCGGGCUCAAUCCUUUUA .(((((........(....)....(((((((((((((...))))))))))))).............)))))................((((((((.((((....((((((((((...((.((.....)).)).....(((((.....((((....((..((((.((((((((..(...(((((((((...(((((((.(((((....))).)).))))))).)))))..))))...)...))))).........))).))))..)).(((((.((......((((((....(((((.(........).))))).((((......))))......))))))......)).)))))....)))).((((((...........((((((((....))))))))..)))))).))))).)))))))))).((((((....((((((..(...........).......(((((((..(((...((((....))))...)))..))).))))..))))))..)))))))))).))))))))........... (-126.42) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAGGAUUGAGCCCGAUACAAUACUGAGCUCAAUAUUUAAGUUAACUAACCUGUCCAACUUUUUGGGGGGGCAGAUCACUUUCUAUUUGUAUUAUUUGGCCUUACAUCGCUUUCUCAGCUCCCAAUGUACUUAGUGGCACAGCGACAUUCUUCGUUAGAAAAAUAAAAUUAAAGGUGCCGUGUUCUGUCAGUACAUUACUAAUUUAUUAAAUUGCUUAGAAAAUUUGUUCUUCACUUGCUUUUUUAUGGAAGUGUUUUUUUAAUUGUUCCGCUAUGUAACAAAAUGCCGUUUUAGAAUCGAUGCUUCCGGUGAGGUAGUAGAAGGAUUUGUUUAUGUCAGGAGACUACACAAAUCUGUUUCUAACCUUUACUUAGCAUAACCACACAAUGAGUUCAGAUUUAACACUAUAAUUUGGUGAAUUUCAACAUUUGCACACUGGGUAUUAUUAGAUCAAGCUUGUUGGUUUUAUAAUGGAUUCGGCUAAAAAAAAUGACCGCACUUUUGAAGCAAAAGUGCGGUCGGUUCUUGAGUUAAAUUUGAAUCA .......(((((((.((.........)).))))))).((((((((((((...((((((..((....))..))))))....................(((((((.(((((.((.((((.(((....((((((((((((((((((((((......)))))..................))))))....)))..))))))))..(((....)))....))).))))...........(((((.(........).)))))................)).)))))........(((((.(((((((.(((((...(((((((...(((((((((((((.((.(((....))))).))))))))..)))))..))))))).)))))........((..((((..(((((((.(.(((....(((..(((......)))..).))....))).).))))))).))))..))))))))).)))))....))))))).....((((((((((((((...)))))))))))))).......)))).))))))))... (-135.76) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 800 520 471 209 162 aact:AA02343|5end_glutamine_synthetase_1600173..1600403_POSITIVE 800 520 471 142 95 aact:AA01269|5end_hypothetical_protein_863172..863402_POSITIVE 773 520 471 190 143 aact:AA01078|5end_transcriptional_regulator_(probable_MerR_family)_746873..747103_POSITIVE 723 540 491 223 174 aact:AA01407|5end_outer_membrane_antigenic_lipoprotein_b_precursor_949005..949235_POSITIVE 723 540 491 225 176 aact:AA00632|5end_inner_membrane_protein_ImpA_434127..434357_POSITIVE 667 520 471 164 118 aact:AA00536|5end_5'-nucleotidase_precursor_366151..366381_POSITIVE 638 50 1 212 163 aact:AA00505|5end_hypothetical_protein_351561..351791_POSITIVE 521 65 21 164 112 aact:AA01436|5end_fructose-bisphosphate_aldolase_class_II_962981..963211_POSITIVE 516 69 25 173 119 aact:AA00511|5end_nicotinamide_mononucleotide_transporter_353884..354114_POSITIVE 485 64 24 156 111 aact:AA01603|5end_oligopeptidase_A_1082898..1083128_POSITIVE 477 60 16 173 119 aact:AA02410|5end_cell_division_protein_1655429..1655659_POSITIVE 475 67 25 181 128 aact:AA01519|5end_conserved_hypothetical_protein_1021794..1022024_POSITIVE 453 65 23 177 138 aact:AA00501|5end_hypothetical_protein_347293..347523_POSITIVE 448 60 14 154 109 aact:AA00254|5end_penicillin-binding_protein_5_177579..177809_POSITIVE 445 65 26 149 111 aact:AA02836|5end_colicin_transport_protein_1991777..1992007_POSITIVE 445 65 26 73 35 aact:AA02835|5end_hypothetical_protein_1991701..1991931_POSITIVE 443 59 17 150 103 aact:AA01936|5end_tyrosyl-tRNA_synthetase_1307043..1307273_POSITIVE 439 70 24 164 111 aact:AA00792|5end_conserved_hypothetical_protein_543142..543372_POSITIVE 438 60 19 110 62 aact:AA01986|5end_pyruvate_dehydrogenase_complex_E2_1348753..1348983_POSITIVE 427 54 18 150 104 aact:AA00552|5end_periplasmic_nitrate_reductase_precursor_377331..377561_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 800 520 471 107 60 aact:AA02342|3end_ISRSO11/IS150_related_transposase,_orfB_1600151..1600301_POSITIVE 800 520 471 107 60 aact:AA01268|3end_transposase_863217..863367_POSITIVE 773 520 471 107 60 aact:AA01077|3end_transposase_746870..747020_POSITIVE 726 520 471 107 60 aact:AA00010|3end_transposase_orfB_fragment_6297..6447_POSITIVE 667 520 471 52 6 aact:AA00535|3end_hypothetical_protein_366119..366269_POSITIVE 521 65 21 124 72 aact:AA01434|3end_conserved_hypothetical_protein_(possible_o-antigen_ligase)_963021..963171_POSITIVE 516 69 25 92 38 aact:AA00508|3end_SAM-dependent_methyltransferase_353883..354033_POSITIVE 477 60 16 68 14 aact:AA02409|3end_DNA_ligase_1655404..1655554_POSITIVE 475 67 25 98 45 aact:AA01517|3end_peptidyl-prolyl_cis-trans_isomerase;_macrophage_infectivity_protein_1021791..1021941_POSITIVE 453 65 23 83 44 aact:AA00499|3end_pyridoxamine-5'-phosphate_oxidase_347279..347429_POSITIVE 448 60 14 131 86 aact:AA00253|3end_hypothetical_protein_177636..177786_POSITIVE 445 65 26 60 22 aact:AA02834|3end_colicin_transport_protein_1991768..1991918_POSITIVE 439 70 24 76 23 aact:AA00790|3end_recombination_DNA_repair_protein_543134..543284_POSITIVE 438 60 19 78 30 aact:AA01985|3end_pyruvate_dehydrogenase,_E1_component_1348801..1348951_POSITIVE 427 54 18 142 96 aact:AA00551|3end_hypothetical_protein_377403..377553_POSITIVE 425 60 18 73 31 aact:AA00223|3end_catalase_(hydroperoxidase;_iron_heme_axial_ligand)_155808..155958_POSITIVE 424 57 19 73 31 aact:AA02142|3end_outer_membrane_protein_OprM_precursor_1467532..1467682_POSITIVE 420 70 24 77 31 aact:AA00453|3end_phosphoglyceromutase_318009..318159_POSITIVE 411 53 13 59 9 aact:AA00612|3end_acyl-(acyl-carrier-protein)-UDP-N-acetylglucosami_ne_418705..418855_POSITIVE 407 59 17 70 27 aact:AA00348|3end_50S_ribosomal_protein_L1_233336..233486_POSITIVE