Origin IGS: ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaagaagattatatatataggagaaagacattgcttacagtatcagacgtatcactgcgtttcagtgaccgaaaattgtttgatgaagtcaacatcaaatttacagaaggaaatacttatggattgattggagctaacggcgctggaaaatcaacctttttaaaaattttagctggtgatatcgagccaacaacaggccacatttctctaggaccaaatgaacgtctttcagtccttcgccagaaccactttgactatgaagaagaacgggctattgatgttgtaatc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gattacaacatcaatagcccgttcttcttcatagtcaaagtggttctggcgaaggactgaaagacgttcatttggtcctagagaaatgtggcctgttgttggctcgatatcaccagctaaaatttttaaaaaggttgattttccagcgccgttagctccaatcaatccataagtatttccttctgtaaatttgatgttgacttcatcaaacaattttcggtcactgaaacgcagtgatacgtctgatactgtaagcaatgtctttctcctatatatataatcttcttcattttactagaaaacagaacttttttcaaataattctgagataaaaactaaaaacctgagcaaaaagaaaaaagagaatagaatgaactaagatttttaggttttacagccagaatagtttgtcaattaagtttacaaatgttgtaaagacgtgtcaataaagttgtaaaaattggatttttggcttttttctagaaacttctttctcattttcattgaaaatgatataatgaactcattataaattgaggagtaataa Mask Tandem Repeat Region ================================================ ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaagaagattatatatataggagaaagacattgcttacagtatcagacgtatcactgcgtttcagtgaccgaaaattgtttgatgaagtcaacatcaaatttacagaaggaaatacttatggattgattggagctaacggcgctggaaaatcaacctttttaaaaattttagctggtgatatcgagccaacaacaggccacatttctctaggaccaaatgaacgtctttcagtccttcgccagaaccactttgactatgaagaagaacgggctattgatgttgtaatc Find is-nt database================================================ Query_seq: SSA_2375:SSA_2376|SSA_2375:SSA_2376:Tryptophanyl-tRNA synthetase, putative:ABC transporter with duplicated ATPase domains, putative:<-->:2378337..2378883 547 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaagaagattatatatataggagaaagacattgcttacagtatcagacgtatcactgcgtttcagtgaccgaaaattgtttgatgaagtcaacatcaaatttacagaaggaaatacttatggattgattggagctaacggcgctggaaaatcaacctttttaaaaattttagctggtgatatcgagccaacaacaggccacatttctctaggaccaaatgaacgtctttcagtccttcgccagaaccactttgactatgaagaagaacgggctattgatgttgtaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_2375:SSA_2376|SSA_2375:SSA_2376:Tryptophanyl-tRNA synthetase, putative:ABC transporter with duplicated ATPase domains, putative:<-->:2378337..2378883 547 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaagaagattatatatataggagaaagacattgcttacagtatcagacgtatcactgcgtttcagtgaccgaaaattgtttgatgaagtcaacatcaaatttacagaaggaaatacttatggattgattggagctaacggcgctggaaaatcaacctttttaaaaattttagctggtgatatcgagccaacaacaggccacatttctctaggaccaaatgaacgtctttcagtccttcgccagaaccactttgactatgaagaagaacgggctattgatgttgtaatc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 14 Min: 263 Max: 547 Len: 285 Subject: gi|89107671|ref|AP_001451.1| fused predicted transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 3.0E-23 bit: 104.0 Len: 258 Query Start:290 Query End:547 Subject Strand: null Subject Start: 1 Subject End: 86 ................................................................................................................................................................................................................................................................................................. L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q N H F D Y E E E R A I D V V I ................................................................................................................................................................................................................................................................................................. M L V S S N V T M Q F G S K P L F E N I S V K F G G G N R Y G L I G A N G S G K S T F M K I L G G D L E P T L G N V S L D P N E R I G K L R Q D Q F A F E E F T V L D T V I HSP 2 e-value: 7.0E-9 bit: 57.0 Len: 258 Query Start:284 Query End:541 Subject Strand: null Subject Start: 317 Subject End: 401 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q N H F D Y E E E R A I D V ...... ........................................................................................................................................................................................................................................................................................... R N A L E V E G L T K G F D N G P L F K N L N L L L E V G E K L A V L G T N G V G K S T L L K T L V G D L Q P D S G T V K W S E N A R I G Y Y A Q D H - E Y E F E N D L T V ...... Subject: gi|89110657|ref|AP_004437.1| fused predicted transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 3.0E-11 bit: 64.7 Len: 228 Query Start:290 Query End:517 Subject Strand: null Subject Start: 312 Subject End: 387 ................................................................................................................................................................................................................................................................................................. L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q N H F D Y .............................. ................................................................................................................................................................................................................................................................................................. L L K M E K V S A G Y G D R I I L D S I K L N L V P G S R I G L L G R N G A G K S T L I K L L A G E L A P V S G E I G L A K G I K L G Y F A Q H Q L E Y .............................. Subject: gi|89111099|ref|AP_004879.1| fused predicted transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 1.0E-8 bit: 56.2 Len: 213 Query Start:290 Query End:502 Subject Strand: null Subject Start: 323 Subject End: 393 ................................................................................................................................................................................................................................................................................................. L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q ............................................. ................................................................................................................................................................................................................................................................................................. V L E V S N L R K S Y G D R L L I D D L S F S I P K G A I V G I I G P N G A G K S T L F R M I S G Q E Q P D S G T I T L G E T V K L A S V D Q ............................................. Subject: gi|89107645|ref|AP_001425.1| fused predicted transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 9.0E-7 bit: 50.1 Len: 174 Query Start:284 Query End:457 Subject Strand: null Subject Start: 327 Subject End: 384 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G .......................................................................................... ........................................................................................................................................................................................................................................................................................... E T V I E A K E L T K K F G D F A A T D H V N F A V K R G E I F G L L G P N G A G K S T T F K M M C G L L V P T S G .......................................................................................... Subject: gi|89107032|ref|AP_000812.1| iron-hydroxamate transporter subunit [Escherichia coli W3110] HSP 1 e-value: 3.0E-6 bit: 48.5 Len: 207 Query Start:263 Query End:469 Subject Strand: null Subject Start: 2 Subject End: 70 ...................................................................................................................................................................................................................................................................... E D Y I Y R R K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L .............................................................................. ...................................................................................................................................................................................................................................................................... Q E Y T N H S D T T F A L R N I S F R V P G R T L L H P L S L T F P A G K V T G L I G H N G S G K S T L L K M L G R H Q P P S E G E I L L .............................................................................. Subject: gi|89108093|ref|AP_001873.1| oligopeptide transporter subunit [Escherichia coli W3110] HSP 1 e-value: 3.0E-6 bit: 48.5 Len: 186 Query Start:281 Query End:466 Subject Strand: null Subject Start: 8 Subject End: 82 ........................................................................................................................................................................................................................................................................................ R K T L L T V S D V S L R F S D R - - - - - - - - - - - - - K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S ................................................................................. ........................................................................................................................................................................................................................................................................................ R K V L L E I A D L K V H F E I K D G K Q W F W Q P P K T L K A V D G V T L R L Y E G E T L G V V G E S G C G K S T F A R A I I G L V K A T D G H V A ................................................................................. Subject: gi|89108698|ref|AP_002478.1| zinc transporter subunit [Escherichia coli W3110] HSP 1 e-value: 3.0E-6 bit: 48.1 Len: 216 Query Start:287 Query End:502 Subject Strand: null Subject Start: 3 Subject End: 74 .............................................................................................................................................................................................................................................................................................. T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q ............................................. .............................................................................................................................................................................................................................................................................................. S L V S L E N V S V S F G Q R R V L S D V S L E L K P G K I L T L L G P N G A G K S T L V R V V L G L V T P D E G V I K R N G K L R I G Y V P Q ............................................. Subject: gi|89107706|ref|AP_001486.1| putrescine transporter subunit [Escherichia coli W3110] HSP 1 e-value: 6.0E-6 bit: 47.4 Len: 180 Query Start:290 Query End:469 Subject Strand: null Subject Start: 19 Subject End: 78 ................................................................................................................................................................................................................................................................................................. L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L .............................................................................. ................................................................................................................................................................................................................................................................................................. L L E I R N L T K S Y D G Q H A V D D V S L T I Y K G E I F A L L G A S G C G K S T L L R M L A G F E Q P S A G Q I M L .............................................................................. Subject: gi|89108738|ref|AP_002518.1| fused L-arabinose transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 6.0E-6 bit: 47.4 Len: 189 Query Start:293 Query End:481 Subject Strand: null Subject Start: 8 Subject End: 70 .................................................................................................................................................................................................................................................................................................... L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E .................................................................. .................................................................................................................................................................................................................................................................................................... L S F R G I G K T F P G V K A L T D I S F D C Y A G Q V H A L M G E N G A G K S T L L K I L S G N Y A P T T G S V V I N G Q E .................................................................. Subject: gi|15613617|ref|NP_241920.1| transposase (08)/ABC transporter (ATP-binding protein) [Bacillus halodurans C-125] HSP 1 e-value: 6.0E-6 bit: 47.4 Len: 180 Query Start:284 Query End:463 Subject Strand: null Subject Start: 590 Subject End: 649 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I .................................................................................... ........................................................................................................................................................................................................................................................................................... E N M I E V I D L S K T Y R N R Q V V K G I N M F I E K G E M V G L L G P N G A G K S T T I S M I S S L I Q P T S G D V .................................................................................... Subject: UniRef90_Q9KE04 Cluster: Transposase (08)/ABC transporter; n=7; Bacillus halodurans|Rep: Transposase (08)/ABC transporter - Bacillus halodurans HSP 1 e-value: 6.0E-6 bit: 47.4 Len: 180 Query Start:284 Query End:463 Subject Strand: null Subject Start: 590 Subject End: 649 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I .................................................................................... ........................................................................................................................................................................................................................................................................................... E N M I E V I D L S K T Y R N R Q V V K G I N M F I E K G E M V G L L G P N G A G K S T T I S M I S S L I Q P T S G D V .................................................................................... Subject: IS|IS660.aa1 HSP 1 e-value: 6.0E-6 bit: 47.4 Len: 180 Query Start:284 Query End:463 Subject Strand: null Subject Start: 590 Subject End: 649 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I .................................................................................... ........................................................................................................................................................................................................................................................................................... E N M I E V I D L S K T Y R N R Q V V K G I N M F I E K G E M V G L L G P N G A G K S T T I S M I S S L I Q P T S G D V .................................................................................... Subject: gi|89107799|ref|AP_001579.1| fused predicted transporter subunits and ATP-binding components of ABC superfamily [Escherichia coli W3110] HSP 1 e-value: 7.0E-6 bit: 47.0 Len: 252 Query Start:284 Query End:535 Subject Strand: null Subject Start: 317 Subject End: 400 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I S L G P N E R L S V L R Q N H F D Y E E E R A I ............ ........................................................................................................................................................................................................................................................................................... K I V F E M E D V C Y Q V N G K Q L V K D F S A Q V L R G D K I A L I G P N G C G K T T L L K L M L G Q L Q A D S G R I H V G T K L E V A Y F D Q H R A E L D P D K T V ............ Subject: gi|89110558|ref|AP_004338.1| leucine/isoleucine/valine transporter subunit [Escherichia coli W3110] HSP 1 e-value: 7.0E-6 bit: 47.0 Len: 180 Query Start:284 Query End:463 Subject Strand: null Subject Start: 3 Subject End: 62 ........................................................................................................................................................................................................................................................................................... K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T T G H I .................................................................................... ........................................................................................................................................................................................................................................................................................... K V M L S F D K V S A H Y G K I Q A L H E V S L H I N Q G E I V T L I G A N G A G K T T L L G T L C G D P R A T S G R I .................................................................................... Find nr database================================================ Query_seq: SSA_2375:SSA_2376|SSA_2375:SSA_2376:Tryptophanyl-tRNA synthetase, putative:ABC transporter with duplicated ATPase domains, putative:<-->:2378337..2378883 547 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 14 End: 124 ............. M Y N E F I I S F S M K M R K K F L E K S Q K S N F Y N F I D T S L Q H L ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 231 End: 383 ...................................................................................................................................................................................................................................... M K K V L F S S K M K K I I Y I G E R H C L Q Y Q T Y H C V S V T E N C L M K S T S N L Q K E I L M D .................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 272 End: 547 ............................................................................................................................................................................................................................................................................... M Y R R K T L L T V S D V S L R F S D R K L F D E V N I K F T E G N T Y G L I G A N G A G K S T F L K I L A G D I E P T Protein_Len: 32 Strand: - Start: 396 End: 491 ........................................................................................................................................................................................................................................................................................................................................................................................................... R R Q F I L R K L F K L Q H Y R A L L L G C K E L V L H V D K M ........................................................ ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 89 Start: 230 End: 259 .....................................................................................................................................................................................................................................TTTGAAAAAAGTTCTGTTTTCTAGTAAAAT................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 101 End: 130 ....................................................................................................ATTGACACGTCTTTACAACATTTGTAAACT................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 29 End: 58 ............................CTTTCTCATTTTCATTGAAAATGATATAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 73 HP_score: -9.0 Tail_Score: -2.80291 Start: 35 End: 53 Full_Region: ctagaaacttctttc tcattttc att gaaaatga tataatgaactcatt ..................................tcattttcattgaaaatga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SSA_2375:SSA_2376|SSA_2375:SSA_2376:Tryptophanyl-tRNA synthetase, putative:ABC transporter with duplicated ATPase domains, putative:<-->:2378337..2378883 547 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctcttttttctttttgctcaggtttttagtttttatctcagaattatttgaaaaaagttctgttttctagtaaaatgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 262 Len: 262 Subject: NC_009009_SSA_2375_SSA_2376|Tryptophanyl-tRNA synthetase, putative:ABC transporter with duplicated ATPase domains, putative|NEGATIVE:POSITIVE|[2378337,2378883]|547 HSP 1 e-value: 1.0E-101 bit: 369.0 Len: 186 Query Start:1 Query End:186 Subject Strand: POSITIVE Subject Start: 1 Subject End: 186 ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctc......................................................................................................................................................................................................................................................................................................................................................................... ttattactcctcaatttataatgagttcattatatcattttcaatgaaaatgagaaagaagtttctagaaaaaagccaaaaatccaatttttacaactttattgacacgtctttacaacatttgtaaacttaattgacaaactattctggctgtaaaacctaaaaatcttagttcattctattctc......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-16 bit: 89.7 Len: 45 Query Start:218 Query End:262 Subject Strand: POSITIVE Subject Start: 218 Subject End: 262 .........................................................................................................................................................................................................................atctcagaattatttgaaaaaagttctgttttctagtaaaatgaa............................................................................................................................................................................................................................................................................................. .........................................................................................................................................................................................................................atctcagaattatttgaaaaaagttctgttttctagtaaaatgaa............................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUUACUCCUCAAUUUAUAAUGAGUUCAUUAUAUCAUUUUCAAUGAAAAUGAGAAAGAAGUUUCUAGAAAAAAGCCAAAAAUCCAAUUUUUACAACUUUAUUGACACGUCUUUACAACAUUUGUAAACUUAAUUGACAAACUAUUCUGGCUGUAAAACCUAAAAAUCUUAGUUCAUUCUAUUCUCUUUUUUCUUUUUGCUCAGGUUUUUAGUUUUUAUCUCAGAAUUAUUUGAAAAAAGUUCUGUUUUCUAGUAAAAUGAA .........((((........)))).(((((...((((((((...))))))))...........((((((((.(((........((((((((((((...((..((....))..))......)))))))...))))).((((..(((((((..((((((.((((((((((.(((.........................))).)))))))))).)))))).)))))))..))))......)))...))))))))...))))). (-45.21) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCAUUUUACUAGAAAACAGAACUUUUUUCAAAUAAUUCUGAGAUAAAAACUAAAAACCUGAGCAAAAAGAAAAAAGAGAAUAGAAUGAACUAAGAUUUUUAGGUUUUACAGCCAGAAUAGUUUGUCAAUUAAGUUUACAAAUGUUGUAAAGACGUGUCAAUAAAGUUGUAAAAAUUGGAUUUUUGGCUUUUUUCUAGAAACUUCUUUCUCAUUUUCAUUGAAAAUGAUAUAAUGAACUCAUUAUAAAUUGAGGAGUAAUAA .........((((((((.........(((((........))))).........((((((((((...................................))))))))))..((((((((.......((((((...(((((((.(((((...........)))))...)))))))))))))..)))))))).))))))))..(((((((..((((((((...))))))))(((((((....)))))))....)))))))..... (-47.35) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 721 120 71 211 162 NC_009009:SSA_2375|5end_Tryptophanyl-tRNA_synthetase,_putative_2378246..2378476_NEGATIVE 293 220 171 129 81 NC_009009:SSA_0200|5end_Bifunctional_folate_synthesis_protein,_putative_198918..199148_POSITIVE 265 224 186 137 101 NC_009009:SSA_1683|5end_NrdI_protein,_putative_1677405..1677635_NEGATIVE 259 49 7 147 97 NC_009009:SSA_1261|5end_Ribose-5-phosphate_isomerase_A,_putative_1287654..1287884_NEGATIVE 259 226 184 47 8 NC_009009:SSA_0616|5end_YlbN-like_protein,_putative_609245..609475_POSITIVE 253 180 132 111 71 NC_009009:SSA_0674|5end_Exodeoxyribonuclease_VII_large_subunit,_putative_657071..657301_POSITIVE 253 221 182 96 44 NC_009009:SSA_0156|5end_ATPase_with_chaperone_activity,_ATP-binding_subunit,_putative_151326..151556_POSITIVE 250 220 173 144 87 NC_009009:SSA_1451|5end_Exonuclease_RexA,_putative_1456418..1456648_NEGATIVE 249 201 173 115 87 NC_009009:SSA_1657|5end_hypothetical_protein_1653231..1653461_NEGATIVE 243 217 179 127 95 NC_009009:SSA_0737|5end_Arginine_deiminase,_putative_718624..718854_POSITIVE 240 190 142 108 60 NC_009009:SSA_0903|5end_NAD(P)H_dehydrogenase_(quinone),_putative_893242..893472_POSITIVE 236 213 178 131 95 NC_009009:SSA_2110|5end_30S_ribosomal_protein_S7,_putative_2115579..2115809_NEGATIVE 234 209 171 133 87 NC_009009:SSA_1665|5end_hypothetical_protein_1665353..1665583_NEGATIVE 234 190 146 108 64 NC_009009:SSA_0807|5end_GTP-binding_protein,_putative_789449..789679_POSITIVE 233 230 181 63 24 NC_009009:SSA_1276|5end_Conserved_uncharacterized_protein_1298446..1298676_NEGATIVE 232 187 147 196 160 NC_009009:SSA_0102|5end_Kinase,_putative_104035..104265_POSITIVE 230 190 147 106 60 NC_009009:SSA_0412|5end_ABC-type_multidrug_transport_system_(3-component_subtilin_immunity_exporter),_ATPase_component,_putative_408163..408393_NEGATIVE 229 210 173 130 87 NC_009009:SSA_0193|5end_CAAX_amino_terminal_protease_family_protein,_putative_194318..194548_POSITIVE 228 180 133 205 172 NC_009009:SSA_2366|5end_ABC-type_cobalt_transport_system,_ATPase_component,_putative_2368869..2369099_NEGATIVE 228 208 167 119 82 NC_009009:SSA_2101|5end_Amino_acid_ABC_transporter,_periplasmic_amino_acid-binding_protein,_putative_2105393..2105623_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 280 80 35 70 19 NC_009009:SSA_0242|3end_hypothetical_protein_235810..235960_POSITIVE 265 224 186 116 80 NC_009009:SSA_1684|3end_Histidine_kinase,_putative_1677426..1677576_NEGATIVE 253 221 182 96 44 NC_009009:SSA_0155|3end_hypothetical_protein_151406..151556_POSITIVE 251 217 171 146 100 NC_009009:SSA_1149|3end_Glycosyl_hydrolase,_family_1,_putative_1179876..1180026_POSITIVE 250 220 173 147 90 NC_009009:SSA_1452|3end_Second_subunit_of_major_exonuclease,_putative_1456415..1456565_NEGATIVE 249 201 173 72 44 NC_009009:SSA_1658|3end_Cationic_amino_acid_transporter,_putative_1653274..1653424_NEGATIVE 238 139 93 136 85 NC_009009:SSA_1832|3end_hypothetical_protein_1822614..1822764_POSITIVE 236 213 178 111 75 NC_009009:SSA_2111|3end_30S_ribosomal_protein_S12,_putative_2115599..2115749_NEGATIVE 236 220 181 41 2 NC_009009:SSA_0199|3end_GTP_cyclohydrolase_I,_putative_198910..199060_POSITIVE 234 209 171 111 65 NC_009009:SSA_1666|3end_Collagen-binding_surface_protein,_putative_1665375..1665525_NEGATIVE 234 190 146 57 13 NC_009009:SSA_0806|3end_hypothetical_protein_789478..789628_POSITIVE 228 208 167 103 66 NC_009009:SSA_2102|3end_Conserved_uncharacterized_protein_2105409..2105559_NEGATIVE 226 230 182 135 76 NC_009009:SSA_0473|3end_Precorrin-6x_reductase,_putative_476331..476481_POSITIVE 224 230 182 120 67 NC_009009:SSA_1769|3end_hypothetical_protein_1756939..1757089_NEGATIVE 220 226 181 140 93 NC_009009:SSA_1880|3end_Glycyl-tRNA_synthetase_alpha_chain,_putative_1874265..1874415_NEGATIVE 220 222 185 90 46 NC_009009:SSA_0905|3end_CshA-like_fibrillar_surface_protein_B_909060..909210_POSITIVE 220 207 164 125 88 NC_009009:SSA_0467|3end_Cobalt-precorrin-6A_synthase_[deacetylating],_putative_471795..471945_POSITIVE 217 208 168 114 75 NC_009009:SSA_0947|3end_hypothetical_protein_954876..955026_POSITIVE 217 212 172 139 89 NC_009009:SSA_0899|3end_Conserved_permease,_putative_891161..891311_POSITIVE 216 231 191 34 2 NC_009009:SSA_1277|3end_D-alanyl-D-alanine_carboxypeptidase_1298476..1298626_NEGATIVE