Origin IGS: tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctatggcgtttaaaatgaaaacaacaaaaggtggttatacaactacattggctgataaaattatcagtcaaaaacaaccgatttactcacttagtaccgaacttgaaccacaacaacggtttgaagaaggaaaaccaacaggagaaatcgtagcctataaagcatggtttgtacaggaagggcaagaccctttccaagtaaaattcgaagatacgattgagcttccagcgtttcaatccatgattcaatttgacaccctacaagcctgcgaagtaaaatataacgtttacttcaaagcaaatggtatcaaggaggttcggta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taccgaacctccttgataccatttgctttgaagtaaacgttatattttacttcgcaggcttgtagggtgtcaaattgaatcatggattgaaacgctggaagctcaatcgtatcttcgaattttacttggaaagggtcttgcccttcctgtacaaaccatgctttataggctacgatttctcctgttggttttccttcttcaaaccgttgttgtggttcaagttcggtactaagtgagtaaatcggttgtttttgactgataattttatcagccaatgtagttgtataaccaccttttgttgttttcattttaaacgccatagggttgttcctcctttattattgagaaataatacgaatgagacttgctcggttttggtcgtgagctggacgtagttgctctagttatgtatcacctccttattactaaggagaatgagacaaccaaacgcaaagttatttgttaaatttttaatttttttataaaaaatccagtgacagagacactggatttgaggta Mask Tandem Repeat Region ================================================ tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctatggcgtttaaaatgaaaacaacaaaaggtggttatacaactacattggctgataaaattatcagtcaaaaacaaccgatttactcacttagtaccgaacttgaaccacaacaacggtttgaagaaggaaaaccaacaggagaaatcgtagcctataaagcatggtttgtacaggaagggcaagaccctttccaagtaaaattcgaagatacgattgagcttccagcgtttcaatccatgattcaatttgacaccctacaagcctgcgaagtaaaatataacgtttacttcaaagcaaatggtatcaaggaggttcggta Find is-nt database================================================ Query_seq: SSA_2291:SSA_2292|SSA_2291:SSA_2292:hypothetical protein:DNA segregation ATPase FtsK/SpoIIIE-like protein, putative:->->:2293794..2294312 519 tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctatggcgtttaaaatgaaaacaacaaaaggtggttatacaactacattggctgataaaattatcagtcaaaaacaaccgatttactcacttagtaccgaacttgaaccacaacaacggtttgaagaaggaaaaccaacaggagaaatcgtagcctataaagcatggtttgtacaggaagggcaagaccctttccaagtaaaattcgaagatacgattgagcttccagcgtttcaatccatgattcaatttgacaccctacaagcctgcgaagtaaaatataacgtttacttcaaagcaaatggtatcaaggaggttcggta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_2291:SSA_2292|SSA_2291:SSA_2292:hypothetical protein:DNA segregation ATPase FtsK/SpoIIIE-like protein, putative:->->:2293794..2294312 519 tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctatggcgtttaaaatgaaaacaacaaaaggtggttatacaactacattggctgataaaattatcagtcaaaaacaaccgatttactcacttagtaccgaacttgaaccacaacaacggtttgaagaaggaaaaccaacaggagaaatcgtagcctataaagcatggtttgtacaggaagggcaagaccctttccaagtaaaattcgaagatacgattgagcttccagcgtttcaatccatgattcaatttgacaccctacaagcctgcgaagtaaaatataacgtttacttcaaagcaaatggtatcaaggaggttcggta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_2291:SSA_2292|SSA_2291:SSA_2292:hypothetical protein:DNA segregation ATPase FtsK/SpoIIIE-like protein, putative:->->:2293794..2294312 519 tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctatggcgtttaaaatgaaaacaacaaaaggtggttatacaactacattggctgataaaattatcagtcaaaaacaaccgatttactcacttagtaccgaacttgaaccacaacaacggtttgaagaaggaaaaccaacaggagaaatcgtagcctataaagcatggtttgtacaggaagggcaagaccctttccaagtaaaattcgaagatacgattgagcttccagcgtttcaatccatgattcaatttgacaccctacaagcctgcgaagtaaaatataacgtttacttcaaagcaaatggtatcaaggaggttcggta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 6 Min: 200 Max: 517 Len: 318 Subject: UniRef90_Q1JEF5 Cluster: Hypothetical protein; n=7; Streptococcus|Rep: Hypothetical protein - Streptococcus pyogenes serotype M2 (strain MGAS10270) HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 318 Query Start:200 Query End:517 Subject Strand: null Subject Start: 1 Subject End: 106 ....................................................................................................................................................................................................... M A F K M X X X X X X X X X X L A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V R .. ....................................................................................................................................................................................................... M A F K M K T T K G G Y T T T L A D K I I S P K Q P I Y S L S T E L E P Q Q R F E D G K P T G E I I A Y K S W F V Q E G Q D P F Q V K F E E K I K L P A F Q S M I Q F D T L Q A C E V K Y N I Y F K A N G L K E V R .. Subject: UniRef90_Q3D1M7 Cluster: Hypothetical protein; n=4; Streptococcus agalactiae|Rep: Hypothetical protein - Streptococcus agalactiae H36B HSP 1 e-value: 1.0E-27 bit: 124.0 Len: 270 Query Start:248 Query End:517 Subject Strand: null Subject Start: 15 Subject End: 104 ....................................................................................................................................................................................................................................................... A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V R .. ....................................................................................................................................................................................................................................................... A N E Y I D S K Q A I H C L S V E L E P Q I R F E E G Q P T G E I I A Y K A W F S Q K G L P P F M V K F E N E V T L P A Y M V M V Q F E N L Q A C E V G F N V Y F K A D N L K E V K .. Subject: UniRef90_Q02V87 Cluster: Hypothetical protein; n=1; Lactococcus lactis subsp. cremoris SK11|Rep: Hypothetical protein - Lactococcus lactis subsp. cremoris (strain SK11) HSP 1 e-value: 5.0E-25 bit: 115.0 Len: 273 Query Start:245 Query End:517 Subject Strand: null Subject Start: 16 Subject End: 106 .................................................................................................................................................................................................................................................... L A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V R .. .................................................................................................................................................................................................................................................... L A N N I L D R S K A T H S L S E T L E P Q M K F E D G K R T D E V I A Y K G W F S Q S G L P P F E V K F T D Q V K L P P Y L S I I T F D H L Q A C E V N Y N I Y F K A D G I K E V K .. Subject: UniRef90_Q5FMZ4 Cluster: Hypothetical protein; n=1; Lactobacillus acidophilus|Rep: Hypothetical protein - Lactobacillus acidophilus HSP 1 e-value: 1.0E-16 bit: 88.2 Len: 273 Query Start:245 Query End:517 Subject Strand: null Subject Start: 13 Subject End: 103 .................................................................................................................................................................................................................................................... L A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V R .. .................................................................................................................................................................................................................................................... L A K M Y I P S D V S T Y S L S I N L D T Q V K W V N G R P T D E V T G Y Q C W F I A E G T E P F K V K F T N K V S L P S M F T K I K F Q N L E A C E V G N N V Y F K A N G F E V M K .. Subject: UniRef90_Q5FM52 Cluster: Hypothetical protein; n=1; Lactobacillus acidophilus|Rep: Hypothetical protein - Lactobacillus acidophilus HSP 1 e-value: 7.0E-16 bit: 85.5 Len: 270 Query Start:245 Query End:514 Subject Strand: null Subject Start: 13 Subject End: 102 .................................................................................................................................................................................................................................................... L A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V ..... .................................................................................................................................................................................................................................................... V A K M Y I P S D V Q I F S L S T E L T K Q V K W I D G K P T N E I N G Y Q A W F V A E G T E P F K V K F T K R V S L P K M L N Q I S L T N L E A C E V G S N V Y F K A T D L E V I ..... Subject: UniRef90_Q031F1 Cluster: Hypothetical protein; n=1; Lactococcus lactis subsp. cremoris SK11|Rep: Hypothetical protein - Lactococcus lactis subsp. cremoris (strain SK11) HSP 1 e-value: 6.0E-15 bit: 82.4 Len: 270 Query Start:248 Query End:517 Subject Strand: null Subject Start: 16 Subject End: 105 ....................................................................................................................................................................................................................................................... A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G Q D P F Q V K F E D T I E L P A F Q S M I Q F D T L Q A C E V K Y N V Y F K A N G I K E V R .. ....................................................................................................................................................................................................................................................... A R K F V V N S L P V Q C T P S F I E T Q Y K Y V D K Q R T D E I T G Y K L W F V Q E G L N P F V V K F D K K P E L P P F L S I V E F E N L Q G I E V R S N I Y F K A D S L K G V K .. tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnta Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 9 End: 116 ........ M Q C L C H W I F Y K K I K N L T N N F A F G C L I L L S N K E V I H N ................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 112 End: 207 ............................................................................................................... M T R A T T S S S R P K P S K S H S Y Y F S I I K E E Q P Y G V ........................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 228 End: 347 ................................................................................................................................................................................................................................... M V I Q L H W L I K L S V K N N R F T H L V P N L N H N N G L K K E N Q Q E K S ............................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 200 End: 517 ....................................................................................................................................................................................................... M A F K M K T T K G G Y T T T L A D K I I S Q K Q P I Y S L S T E L E P Q Q R F E E G K P T G E I V A Y K A W F V Q E G .. Protein_Len: 60 Strand: - Start: 291 End: 476 .................................................................................................................................................................................................................................................................................................. V Q V V V V T Q L L F V L L L F R L R Y L M T Q V P L A L G K G L L I R L Y S Q A E L T E I W S E I Q C G V L R R L L M ........................................... Protein_Len: 53 Strand: - Start: 287 End: 445 .............................................................................................................................................................................................................................................................................................. K T G F K F W L L P K F F S F W C S F D Y G I F C P K Y L F P L V R E L Y F E F I R N L K W R K L G H N M .......................................................................... Protein_Len: 49 Strand: - Start: 128 End: 274 ............................................................................................................................... T W S V V L V S C T E N T N N R L L L P P V V R H R K F H F C C F T T I C S C Q S I F N D T L F M ..................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 57 End: 155 ........................................................ C I V K R K T T E N E K T I L L H Y M V L A V V D L E R G F G L M ............................................................................................................................................................................................................................................................................................................................................................................ tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 81 Start: 378 End: 394 .........................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAGGGTCTTGCC............................................................................................................................. tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SSA_2291:SSA_2292|SSA_2291:SSA_2292:hypothetical protein:DNA segregation ATPase FtsK/SpoIIIE-like protein, putative:->->:2293794..2294312 519 tacctcaaatccagtgtctctgtcactggattttttataaaaaaattaaaaatttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnta Intra-Species Hit: Count: 1 Min: 1 Max: 199 Len: 199 Subject: NC_009009_SSA_2291_SSA_2292|hypothetical protein:DNA segregation ATPase FtsK/SpoIIIE-like protein, putative|POSITIVE:POSITIVE|[2293794,2294312]|519 HSP 1 e-value: 1.0E-77 bit: 291.0 Len: 147 Query Start:53 Query End:199 Subject Strand: POSITIVE Subject Start: 53 Subject End: 199 ....................................................tttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccct................................................................................................................................................................................................................................................................................................................................ ....................................................tttaacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtgatacataactagagcaactacgtccagctcacgaccaaaaccgagcaagtctcattcgtattatttctcaataataaaggaggaacaaccct................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-12 bit: 75.8 Len: 38 Query Start:1 Query End:38 Subject Strand: POSITIVE Subject Start: 1 Subject End: 38 tacctcaaatccagtgtctctgtcactggattttttat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. tacctcaaatccagtgtctctgtcactggattttttat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 2 Min: 3 Max: 107 Len: 105 Subject: NC_004368_gbs2067_gbs2068|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2141402,2141602]|201 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 52 Query Start:56 Query End:107 Subject Strand: POSITIVE Subject Start: 58 Subject End: 109 .......................................................aacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtg............................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................aacaaataactttgcgtttagctgtctcattctccttagtaatgaggaggtg............................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 34 Query Start:3 Query End:36 Subject Strand: POSITIVE Subject Start: 3 Subject End: 36 ..cctcaaatccagtgtctctgtcactggatttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..cctcaaatccagtgtctctgtcactggatttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_007432_SAK_2054_SAK_2055|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2047425,2047626]|202 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 52 Query Start:56 Query End:107 Subject Strand: POSITIVE Subject Start: 59 Subject End: 110 .......................................................aacaaataactttgcgtttggttgtctcattctccttagtaataaggaggtg............................................................................................................................................................................................................................................................................................................................................................................................................................ .......................................................aacaaataaatttgcgtttagctgtctcattctccttagtaatgaggaggtg............................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 34 Query Start:3 Query End:36 Subject Strand: POSITIVE Subject Start: 3 Subject End: 36 ..cctcaaatccagtgtctctgtcactggatttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..cctcaaatccagtgtctctgtcactggatttttt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCUCAAAUCCAGUGUCUCUGUCACUGGAUUUUUUAUAAAAAAAUUAAAAAUUUAACAAAUAACUUUGCGUUUGGUUGUCUCAUUCUCCUUAGUAAUAAGGAGGUG ....((((((((((.......))))))))))...........................((((((........)))))).....((((((((....)))))))).. (-26.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CACCUCCUUAUUACUAAGGAGAAUGAGACAACCAAACGCAAAGUUAUUUGUUAAAUUUUUAAUUUUUUUAUAAAAAAUCCAGUGACAGAGACACUGGAUUUGAGG ...(((((((....))))))).....(((((...(((.....)))..)))))......................((((((((((.......)))))))))).... (-24.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 238 22 4 42 23 NC_009009:SSA_0389|5end_hypothetical_protein_384172..384402_POSITIVE 236 94 70 95 72 NC_009009:SSA_2228|5end_Acetyltransferase_(GNAT)_family,_putative_2228768..2228998_NEGATIVE 236 96 63 111 62 NC_009009:SSA_1767|5end_Bacitracin_ABC_transporter,_ATP-binding_protein,_putative_1756103..1756333_NEGATIVE 231 88 57 203 172 NC_009009:SSA_1841|5end_Cof_family_protein/peptidyl-prolyl_cis-trans_isomerase,_cyclophilin_type,_putative_1835822..1836052_NEGATIVE 227 94 52 54 9 NC_009009:SSA_1211|5end_hypothetical_protein_1234695..1234925_POSITIVE 223 39 2 55 20 NC_009009:SSA_2023|5end_Fructan_beta-fructosidase_precursor,_putative_2028826..2029056_NEGATIVE 220 93 52 168 114 NC_009009:SSA_1344|5end_Xanthine/uracil_permeases,_putative_1363352..1363582_NEGATIVE 219 35 1 32 3 NC_009009:SSA_0848|5end_Pyruvate_kinase_I,_fructose-stimulated,_putative_834439..834669_POSITIVE 214 93 67 66 39 NC_009009:SSA_1577|5end_Proline_dipeptidase,_putative_1580294..1580524_POSITIVE 209 27 1 64 40 NC_009009:SSA_1511|5end_Glycosyltransferase,_putative_1516697..1516927_NEGATIVE 207 100 65 151 113 NC_009009:SSA_2301|5end_S-layer_protein/_peptidoglycan_endo-beta-N-acetylglucosaminidase,_putative_2303268..2303498_NEGATIVE 205 34 4 139 111 NC_009009:SSA_2137|5end_hypothetical_protein_2138412..2138642_NEGATIVE 204 24 1 170 150 NC_009009:SSA_1132|5end_TatC,_sec-independent_protein_translocase,_putative_1158645..1158875_POSITIVE 203 31 1 49 23 NC_009009:SSA_1606|5end_Dephospho-CoA_kinase,_putative_1612425..1612655_NEGATIVE 202 35 2 218 183 NC_009009:SSA_2349|5end_DTDP-4-dehydrorhamnose_3,5-epimerase,_putative_2351708..2351938_NEGATIVE 201 92 67 37 14 NC_009009:SSA_1433|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase,_putative_1440817..1441047_NEGATIVE 201 99 59 163 122 NC_009009:SSA_1062|5end_50S_ribosomal_protein_L27,_putative_1078284..1078514_POSITIVE 200 88 62 44 21 NC_009009:SSA_2230|5end_Ribonucleotide_reductase,_class_III,_anaerobic,_putative_2231158..2231388_NEGATIVE 200 98 65 113 63 NC_009009:SSA_0808|5end_hypothetical_protein_790771..791001_POSITIVE 200 34 2 36 11 NC_009009:SSA_0486|5end_Uroporphyrinogen-III_synthase,_putative_486637..486867_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 238 22 4 38 19 NC_009009:SSA_0388|3end_Mismatch_repair_ATPase_(MutS_family),_putative_384248..384398_POSITIVE 236 94 70 42 19 NC_009009:SSA_2229|3end_hypothetical_protein_2228821..2228971_NEGATIVE 236 96 63 111 62 NC_009009:SSA_1768|3end_Transcriptional_regulator,_TetR/AcrR_family,_putative_1756103..1756253_NEGATIVE 222 90 63 30 1 NC_009009:SSA_0211|3end_hypothetical_protein_208456..208606_POSITIVE 210 31 5 84 58 NC_009009:SSA_2291|3end_hypothetical_protein_2293733..2293883_POSITIVE 210 100 63 116 75 NC_009009:SSA_0915|3end_hypothetical_protein_928014..928164_POSITIVE 209 27 1 60 36 NC_009009:SSA_1512|3end_hypothetical_protein_1516701..1516851_NEGATIVE 207 100 65 115 77 NC_009009:SSA_2302|3end_Type_IV_fimbrial_biogenesis_protein,_prepilin_cysteine_protease_(C20)_PilD,_putative_2303304..2303454_NEGATIVE 205 34 4 89 61 NC_009009:SSA_2138|3end_RNA-binding_protein,_Jag_family,_putative_2138462..2138612_NEGATIVE 203 31 1 43 17 NC_009009:SSA_1607|3end_Formamidopyrimidine-DNA_glycosylase,_putative_1612431..1612581_NEGATIVE 200 98 65 101 51 NC_009009:SSA_0807|3end_GTP-binding_protein,_putative_790839..790989_POSITIVE 200 34 2 51 26 NC_009009:SSA_0485|3end_Porphobilinogen_deaminase,_putative_486732..486882_POSITIVE 199 28 1 129 107 NC_009009:SSA_1960|3end_hypothetical_protein_1956571..1956721_NEGATIVE 197 98 63 39 1 NC_009009:SSA_0817|3end_Antirepressor_regulating_drug_resistance_(membrane-bound),_putative_799375..799525_POSITIVE 195 95 68 123 95 NC_009009:SSA_1821|3end_Acetyltransferase_(N-acetylase_of_ribosomal_proteins),_putative_1810047..1810197_NEGATIVE 195 98 61 81 29 NC_009009:SSA_1209|3end_Inorganic_polyphosphate/ATP-NAD_kinase,_putative_1233182..1233332_NEGATIVE 195 90 56 84 45 NC_009009:SSA_0107|3end_50S_ribosomal_protein_L3,_putative_108871..109021_POSITIVE 194 96 58 55 20 NC_009009:SSA_0473|3end_Precorrin-6x_reductase,_putative_476331..476481_POSITIVE 191 88 57 144 106 NC_009009:SSA_2276|3end_hypothetical_protein_2275587..2275737_NEGATIVE 191 90 64 90 53 NC_009009:SSA_1446|3end_Histidinol_dehydrogenase,_putative_1447898..1448048_NEGATIVE