Origin IGS: aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttaaaatttaaagtagttccaatgtgcatttaatcgaacatcattccaactttttgttgaacttgacattgcccatccatatttttgagaatcagatgacttaacagttccccaaagattagttatcgaagattttgaaccaatattattcggagatttaacatagtaattagaataaccatagttatcattcacaccataattccattcatcaataatcggatatggggctggatatgctacttctgcactaacgatactagtcatagtagttagcccaaaacctaaagaaactgtagctaataaagctaatgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagaactcctttttaaaatgttactaaaagctacattttgaaaaaaatattttaaaatagtatatcatggaataaaaaggagggcaaatgtgaaaaaaatagtgtacaatttaattttactggcagtaacgtcaatagttactacaagtgtatttccatggtggtggttatggtggtaaagtgaatagaataggaaaggggcgagtccaatggggtcgttgattgtgactagctaagctataaattggaaaggtaaaatattctctaaaaactataaaatattcaatataggagtgtagttatgaaaataagaattaaaaataaaacattagctttattagctacagtttctttaggttttgggctaactactatgactagtatcgttagtgcagaagtagcatatccagccccatatccgattattgatgaatggaattatggtgtgaatgataactatggttattctaattactatgttaaatctccgaataatattggttcaaaatcttcgataactaatctttggggaactgttaagtcatctgattctcaaaaatatggatgggcaatgtcaagttcaacaaaaagttggaatgatgttcgattaaatgcacattggaactactttaaattttaacaatagtttatgaaagttggaagacccaataatattatagggtcttttataatataggtaggagctt Mask Tandem Repeat Region ================================================ aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttaaaatttaaagtagttccaatgtgcatttaatcgaacatcattccaactttttgttgaacttgacattgcccatccatatttttgagaatcagatgacttaacagttccccaaagattagttatcgaagattttgaaccaatattattcggagatttaacatagtaattagaataaccatagttatcattcacaccataattccattcatcaataatcggatatggggctggatatgctacttctgcactaacgatactagtcatagtagttagcccaaaacctaaagaaactgtagctaataaagctaatgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Find is-nt database================================================ Query_seq: SSA_2250:SSA_2251|SSA_2250:SSA_2251:ABC-type antimicrobial peptide transporter, permease component, putative:hypothetical protein:<-->:2246502..2247208 707 aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttaaaatttaaagtagttccaatgtgcatttaatcgaacatcattccaactttttgttgaacttgacattgcccatccatatttttgagaatcagatgacttaacagttccccaaagattagttatcgaagattttgaaccaatattattcggagatttaacatagtaattagaataaccatagttatcattcacaccataattccattcatcaataatcggatatggggctggatatgctacttctgcactaacgatactagtcatagtagttagcccaaaacctaaagaaactgtagctaataaagctaatgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_2250:SSA_2251|SSA_2250:SSA_2251:ABC-type antimicrobial peptide transporter, permease component, putative:hypothetical protein:<-->:2246502..2247208 707 aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttaaaatttaaagtagttccaatgtgcatttaatcgaacatcattccaactttttgttgaacttgacattgcccatccatatttttgagaatcagatgacttaacagttccccaaagattagttatcgaagattttgaaccaatattattcggagatttaacatagtaattagaataaccatagttatcattcacaccataattccattcatcaataatcggatatggggctggatatgctacttctgcactaacgatactagtcatagtagttagcccaaaacctaaagaaactgtagctaataaagctaatgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_2250:SSA_2251|SSA_2250:SSA_2251:ABC-type antimicrobial peptide transporter, permease component, putative:hypothetical protein:<-->:2246502..2247208 707 aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttaaaatttaaagtagttccaatgtgcatttaatcgaacatcattccaactttttgttgaacttgacattgcccatccatatttttgagaatcagatgacttaacagttccccaaagattagttatcgaagattttgaaccaatattattcggagatttaacatagtaattagaataaccatagttatcattcacaccataattccattcatcaataatcggatatggggctggatatgctacttctgcactaacgatactagtcatagtagttagcccaaaacctaaagaaactgtagctaataaagctaatgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 71 Max: 379 Len: 309 Subject: UniRef90_Q1JF40 Cluster: Hypothetical exported protein; n=1; Streptococcus pyogenes MGAS10270|Rep: Hypothetical exported protein - Streptococcus pyogenes serotype M2 (strain MGAS10270) HSP 1 e-value: 2.0E-43 bit: 177.0 Len: 303 Query Start:71 Query End:373 Subject Strand: null Subject Start: 1 Subject End: 101 ...................................................................... L L A T V S L G F G L T T M T S I V S A E V A Y P A P Y P I I D E W N Y G V N D N Y G Y S N Y Y V K S P N N I G S K S S I T N L W G T V K S S D S Q K Y G W A M S S S T K S W N D V R L N A H W N Y F K F .............................................................................................................................................................................................................................................................................................................................................. ...................................................................... M L A V S S L S L G F T A V T S V V S A A T A H P A P S P I I D E W N Y G V S D N Y G Y S N Y Y V K S P N N I G S K S S I T N Y W G S I K A S D S Q K Y G W A L S S S K K A W N D I R L N A H W N Y F N F .............................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q48RH4 Cluster: Hypothetical exported protein; n=1; Streptococcus pyogenes serotype M28|Rep: Hypothetical exported protein - Streptococcus pyogenes serotype M28 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 231 Query Start:149 Query End:379 Subject Strand: null Subject Start: 2 Subject End: 78 .................................................................................................................................................... L A L L A T V S L G F G L T T M T S I V S A E V A Y P A P Y P I I D E W N Y G V N D N Y G Y S N Y Y V K S P N N I G S K S S I T N L W G T V K S S D S Q K ........................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................... I T L L A V S S L S L G F T A V T S V V S A A T A H P A P S P I I D E W N Y G V S D N Y G Y S N Y Y V K S P N N I G S K S S I T N Y W G S I K A S D S Q K ........................................................................................................................................................................................................................................................................................................................................ aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 212 End: 340 ................................................................................................................................................................................................................... M I R R F N I V I R I T I V I I H T I I P F I N N R I W G W I C Y F C T N D T S H S S ............................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 282 End: 422 ......................................................................................................................................................................................................................................................................................... M I G Y G A G Y A T S A L T I L V I V V S P K P K E T V A N K A N V L F L I L I F I T T L L Y ............................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 421 End: 537 .................................................................................................................................................................................................................................................................................................................................................................................................................................... M E Y F I V F R E Y F T F P I Y S L A S H N Q R P H W T R P F P I L F T L P P .......................................................................................................................................................................... Protein_Len: 52 Strand: + Start: 485 End: 640 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N D P I G L A P F L F Y S L Y H H N H H H G N T L V V T I D V T A S K I K L Y T I F F T F A L L F I P ................................................................... Protein_Len: 40 Strand: - Start: 532 End: 651 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W W L W W W P F V S T T V I S T V A L L I L N Y V I K K V N A R R K I G H Y V M ........................................................ Protein_Len: 40 Strand: - Start: 527 End: 646 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. K V V M V V V M S I C K Y Y S N V N S G T F N F Q V S N K E C K G E K K N W S M ............................................................. Protein_Len: 60 Strand: - Start: 71 End: 427 ...................................................................... Y N D N V G Y N W E D I I P Y P A P Y A V E A S V I S T M T T L G F G L S V T A L L A L T K N K I R I K M V V S R Y Q M ........................................................................................................................................................................................................................................................................................ aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 45 End: 74 ............................................CTTCCAACTTTCATAAACTATTGTTAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 620 End: 649 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCCTCCTTTTTATTCCATGATATACT.......................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 257 End: 286 ................................................................................................................................................................................................................................................................ATTCACACCATAATTCCATTCATCAATAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 79 HP_score: -7.3 Tail_Score: -4.51378 Start: 24 End: 45 Full_Region: ttatgaaagttggaa gacccaata atat tatagggtc ttttataatataggt .......................gacccaataatattatagggtc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_2250:SSA_2251|SSA_2250:SSA_2251:ABC-type antimicrobial peptide transporter, permease component, putative:hypothetical protein:<-->:2246502..2247208 707 aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacactatttttttcacatttgccctcctttttattccatgatatactattttaaaatatttttttcaaaatgtagcttttagtaacattttaaaaaggagttctt Intra-Species Hit: Count: 1 Min: 1 Max: 707 Len: 707 Subject: NC_009009_SSA_2250_SSA_2251|ABC-type antimicrobial peptide transporter, permease component, putative:hypothetical protein|NEGATIVE:POSITIVE|[2246502,2247208]|707 HSP 1 e-value: 1.0E-125 bit: 450.0 Len: 227 Query Start:380 Query End:606 Subject Strand: POSITIVE Subject Start: 380 Subject End: 606 ...........................................................................................................................................................................................................................................................................................................................................................................................tgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacac..................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................tgttttatttttaattcttattttcataactacactcctatattgaatattttatagtttttagagaatattttacctttccaatttatagcttagctagtcacaatcaacgaccccattggactcgcccctttcctattctattcactttaccaccataaccaccaccatggaaatacacttgtagtaactattgacgttactgccagtaaaattaaattgtacac..................................................................................................... HSP 2 e-value: 2.0E-31 bit: 139.0 Len: 70 Query Start:1 Query End:70 Subject Strand: POSITIVE Subject Start: 1 Subject End: 70 aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgtta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aagctcctacctatattataaaagaccctataatattattgggtcttccaactttcataaactattgtta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 1.0E-13 bit: 79.8 Len: 40 Query Start:668 Query End:707 Subject Strand: POSITIVE Subject Start: 668 Subject End: 707 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaatgtagcttttagtaacattttaaaaaggagttctt ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaatgtagcttttagtaacattttaaaaaggagttctt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGCUCCUACCUAUAUUAUAAAAGACCCUAUAAUAUUAUUGGGUCUUCCAACUUUCAUAAACUAUUGUUAAAAUUUAAAGUAGUUCCAAUGUGCAUUUAAUCGAACAUCAUUCCAACUUUUUGUUGAACUUGACAUUGCCCAUCCAUAUUUUUGAGAAUCAGAUGACUUAACAGUUCCCCAAAGAUUAGUUAUCGAAGAUUUUGAACCAAUAUUAUUCGGAGAUUUAACAUAGUAAUUAGAAUAACCAUAGUUAUCAUUCACACCAUAAUUCCAUUCAUCAAUAAUCGGAUAUGGGGCUGGAUAUGCUACUUCUGCACUAACGAUACUAGUCAUAGUAGUUAGCCCAAAACCUAAAGAAACUGUAGCUAAUAAAGCUAAUGUUUUAUUUUUAAUUCUUAUUUUCAUAACUACACUCCUAUAUUGAAUAUUUUAUAGUUUUUAGAGAAUAUUUUACCUUUCCAAUUUAUAGCUUAGCUAGUCACAAUCAACGACCCCAUUGGACUCGCCCCUUUCCUAUUCUAUUCACUUUACCACCAUAACCACCACCAUGGAAAUACACUUGUAGUAACUAUUGACGUUACUGCCAGUAAAAUUAAAUUGUACACUAUUUUUUUCACAUUUGCCCUCCUUUUUAUUCCAUGAUAUACUAUUUUAAAAUAUUUUUUUCAAAAUGUAGCUUUUAGUAACAUUUUAAAAAGGAGUUCUU .(((((((..(((((..(((.(((((((.(((....))).))))))).............(((((.((((((.(((..((((((..((((((.((.......(.....)....((((.....))))....)))))))).............((.((((((.(((((((...................)))))))...)))))).)).....))))))..))).))))))))))).....((.((((....))))))......................((((((...(((....((((((.....((((((..((.((((.......)))))).))))))))))))..........(((((..(((((.....)))))..))))).............................)))..)))))).)))..))))).....(((((((((((((....................((.((((.((((..........)))))))).))........................................(((((((....(((.((((((((.......)))))))).)))..((..((((........))))..))....................)))))))...........)))))))))))))..(((((((.((.....)).)))))))....)))))))... (-122.11) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGAACUCCUUUUUAAAAUGUUACUAAAAGCUACAUUUUGAAAAAAAUAUUUUAAAAUAGUAUAUCAUGGAAUAAAAAGGAGGGCAAAUGUGAAAAAAAUAGUGUACAAUUUAAUUUUACUGGCAGUAACGUCAAUAGUUACUACAAGUGUAUUUCCAUGGUGGUGGUUAUGGUGGUAAAGUGAAUAGAAUAGGAAAGGGGCGAGUCCAAUGGGGUCGUUGAUUGUGACUAGCUAAGCUAUAAAUUGGAAAGGUAAAAUAUUCUCUAAAAACUAUAAAAUAUUCAAUAUAGGAGUGUAGUUAUGAAAAUAAGAAUUAAAAAUAAAACAUUAGCUUUAUUAGCUACAGUUUCUUUAGGUUUUGGGCUAACUACUAUGACUAGUAUCGUUAGUGCAGAAGUAGCAUAUCCAGCCCCAUAUCCGAUUAUUGAUGAAUGGAAUUAUGGUGUGAAUGAUAACUAUGGUUAUUCUAAUUACUAUGUUAAAUCUCCGAAUAAUAUUGGUUCAAAAUCUUCGAUAACUAAUCUUUGGGGAACUGUUAAGUCAUCUGAUUCUCAAAAAUAUGGAUGGGCAAUGUCAAGUUCAACAAAAAGUUGGAAUGAUGUUCGAUUAAAUGCACAUUGGAACUACUUUAAAUUUUAACAAUAGUUUAUGAAAGUUGGAAGACCCAAUAAUAUUAUAGGGUCUUUUAUAAUAUAGGUAGGAGCUU ..(..((((((((((..(((.(((((........(((((....))))).........)))))...)))....))))))))))..)..............((((((...((((((((..((.((((............((((((.(...((((((...((((((.(((((((((((((..(((...((((((...(((((.((((.(((...))).)))).(((((((.((((..((((((....(((((.((........)).))))).(((((((...(((.....)))....)))))))............................))))))..)))).))))))))))))..)))))).))).))))))))))))).)))))).))))))).)))))).......((((...((((((((.((((.(((((((..(((((((.(((((((.......)))))))....))))))).....((((((((....(((((((.............))))))).))))))))............))).)))))))).))).)))))))))..))))...((((((.....)))))).....))..))))))))..))))))...((((((((((((........)))))).......((((((((((.(((....))).))))))))))......))))))...... (-161.65) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 808 140 91 231 182 NC_009009:SSA_2250|5end_ABC-type_antimicrobial_peptide_transporter,_permease_component,_putative_2246411..2246641_NEGATIVE 332 310 262 202 140 NC_009009:SSA_1862|5end_hypothetical_protein_1858541..1858771_NEGATIVE 322 588 541 126 81 NC_009009:SSA_0299|5end_hypothetical_protein_292759..292989_POSITIVE 309 536 491 119 57 NC_009009:SSA_2175|5end_hypothetical_protein_2174042..2174272_NEGATIVE 306 345 315 40 9 NC_009009:SSA_1727|5end_ABC_transporter_membrane-spanning_permease-branched_chain_amino_acid_transport,_putative_1713420..1713650_NEGATIVE 301 310 263 164 124 NC_009009:SSA_0487|5end_Delta-aminolevulinic_acid_dehydratase,_putative_487349..487579_POSITIVE 298 320 275 184 144 NC_009009:SSA_2159|5end_hypothetical_protein_2159621..2159851_NEGATIVE 295 590 541 45 1 NC_009009:SSA_2097|5end_Amino_acid_ABC_transporter,_ATP-binding_protein,_putative_2102918..2103148_NEGATIVE 294 500 455 229 178 NC_009009:SSA_1698|5end_Galactose-6-phosphate_isomerase,_LacB_subunit,_putative_1690648..1690878_NEGATIVE 290 518 471 73 34 NC_009009:SSA_1791|5end_Acylphosphatase,_putative_1773676..1773906_POSITIVE 286 535 492 228 175 NC_009009:SSA_0051|5end_Dihydroxyacetone_kinase_phosphotransfer_protein,_putative_55190..55420_POSITIVE 281 534 502 132 96 NC_009009:SSA_1985|5end_hypothetical_protein_1981773..1982003_NEGATIVE 279 510 464 174 121 NC_009009:SSA_1012|5end_Phosphoenolpyruvate_synthase,_putative_1014739..1014969_POSITIVE 278 179 138 214 163 NC_009009:SSA_1050|5end_ABC_transporter_membrane-spanning_permease-spermidine/putrescine_transport,_putative_1064888..1065118_POSITIVE 277 320 271 197 158 NC_009009:SSA_0337|5end_Hydroxymethylglutaryl-CoA_reductase,_putative_332163..332393_NEGATIVE 276 338 293 129 79 NC_009009:SSA_0629|5end_hypothetical_protein_618967..619197_POSITIVE 275 515 485 163 121 NC_009009:SSA_0812|5end_hypothetical_protein_793443..793673_POSITIVE 274 630 581 104 51 NC_009009:SSA_1984|5end_Cell_surface_SD_repeat_antigen_precursor,_putative_1979035..1979265_NEGATIVE 273 526 486 47 3 NC_009009:SSA_2304|5end_Conserved_uncharacterized_protein_2306270..2306500_NEGATIVE 273 318 271 72 30 NC_009009:SSA_1147|5end_Beta-glucosides_PTS,_EIIB,_putative_1176782..1177012_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 306 345 315 36 5 NC_009009:SSA_1728|3end_ABC_transporter_membrane-spanning_permease-branched_chain_amino_acid_transport,_putative_1713424..1713574_NEGATIVE 296 313 272 68 30 NC_009009:SSA_1621|3end_Amino_acid_transporter,_putative_1623172..1623322_NEGATIVE 295 179 131 75 23 NC_009009:SSA_2075|3end_Transketolase,_putative_2077113..2077263_NEGATIVE 288 316 272 142 99 NC_009009:SSA_0093|3end_V-type_sodium_ATPase,_subunit_D,_putative_94989..95139_POSITIVE 282 307 262 151 92 NC_009009:SSA_1863|3end_NH(3)-dependent_NAD(+)_synthetase,_putative_1858589..1858739_NEGATIVE 276 338 293 142 92 NC_009009:SSA_0628|3end_Fe-S-cluster_redox_enzyme/radical_SAM_enzyme,_Cfr_family,_putative_619060..619210_POSITIVE 275 367 325 70 22 NC_009009:SSA_0921|3end_Zn-dependeant_threonine_dehydrogenase,_putative_932164..932314_POSITIVE 274 319 283 41 2 NC_009009:SSA_0375|3end_D-methionine-binding_lipoprotein_(ABC-type_transporter),_putative_365209..365359_POSITIVE 273 318 271 75 33 NC_009009:SSA_1146|3end_Phosphotransferase_system_cellobiose-specific_component_IIA,_putative_1176865..1177015_POSITIVE 271 333 293 122 77 NC_009009:SSA_0914|3end_Phenylalanyl-tRNA_synthetase_beta_chain,_putative_927437..927587_POSITIVE 270 210 164 71 23 NC_009009:SSA_0061|3end_Tagatose_1,6-diphosphate_aldolase,_putative_63787..63937_POSITIVE 265 510 469 66 16 NC_009009:SSA_1938|3end_Enoyl-acyl_carrier_protein(ACP)_reductase,_putative_1924764..1924914_NEGATIVE 265 368 327 46 12 NC_009009:SSA_0271|3end_Glycosylhydrolase,_family_35,_putative_266093..266243_POSITIVE 264 345 305 96 56 NC_009009:SSA_0488|3end_Glutamate-1-semialdehyde_2,1-aminotransferase,_putative_489742..489892_POSITIVE 263 510 469 111 73 NC_009009:SSA_1970|3end_Acetolactate_synthase,_large_subunit,_biosynthetic_type,_putative_1965215..1965365_NEGATIVE 262 645 601 127 86 NC_009009:SSA_1454|3end_hypothetical_protein_1460255..1460405_NEGATIVE 262 520 473 149 99 NC_009009:SSA_0576|3end_Conserved_GTPase,_putative_571225..571375_POSITIVE 261 534 503 107 76 NC_009009:SSA_0901|3end_Alpha-acetolactate_decarboxylase,_putative_893246..893396_POSITIVE 260 530 488 144 105 NC_009009:SSA_0324|3end_Conserved_uncharacterized_protein_317593..317743_POSITIVE 259 507 469 40 1 NC_009009:SSA_0835|3end_Accessory_secretory_protein_Asp3,_putative_821595..821745_POSITIVE