Origin IGS: atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aattagccaaaatcaaaagtttgtgttatactaattaacggagcaacagttttgcgtgaagcgggtcaggggaggaatccagcagccctaagcgaagtaagctgtgtgctctttttctatacctcttaacgaatcaagcctgaaaggcgcagatgaatcttagagcaatggatgcagtttttcccataagggaaaaatctgtaaaccggatagagtcttttaacgaatcaactccgaaggaggaagatgagtttagagacattgacgcagtttgagcgaagcgagaactacgttccgatgttgaatgaatcaagcctgaaaggcacagatgaattttagagcaatggatgcagtttttcccataagggaaaaatctgtaaaccggatagagtctttgagtgaattaagtccgaaggacacaaaagaacttaggtacattgatgcagtttgagcgaagcgatatctacgttccaatgttgaatgaatcaagcctgaaaggcgcagatgaatattggagcagtgaatctagttcgaacgaatctgaaatgaattcagttgacatccaatcttaagaagcatattggctttcttgttaatcaaaaatattcttattagtagggctaaaattttccgacttacgcaaacgattgctttcagatggctactaggattagctcatttataaaaaattaaattggaagcgttttaaaacaataaattacttgctaaataagtatgaaagcgat Mask Tandem Repeat Region ================================================ atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Find is-nt database================================================ Query_seq: SSA_2183:SSA_2184|SSA_2183:SSA_2184:Glucose-6-phosphate isomerase, putative:hypothetical protein:<-<-:2182628..2183373 746 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_2183:SSA_2184|SSA_2183:SSA_2184:Glucose-6-phosphate isomerase, putative:hypothetical protein:<-<-:2182628..2183373 746 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_2183:SSA_2184|SSA_2183:SSA_2184:Glucose-6-phosphate isomerase, putative:hypothetical protein:<-<-:2182628..2183373 746 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 90 End: 218 ......................................................................................... M K A I V C V S R K I L A L L I R I F L I N K K A N M L L K I G C Q L N S F Q I R S N ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 185 End: 280 ........................................................................................................................................................................................ M S T E F I S D S F E L D S L L Q Y S S A P F R L D S F N I G T .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 222 End: 434 ............................................................................................................................................................................................................................. M H C S N I H L R L S G L I H S T L E R R Y R F A Q T A S M Y L S S F V S F G L N S L K D S I R F T D F S L M G K T A S ........................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 398 End: 610 ............................................................................................................................................................................................................................................................................................................................................................................................................. M H C S K I H L C L S G L I H S T S E R S S R F A Q T A S M S L N S S S S F G V D S L K D S I R F T D F S L M G K T A S ........................................................................................................................................ Protein_Len: 33 Strand: - Start: 621 End: 719 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S T Y F F L V C S V E S L A A P N R G Q G A E R L V T A G N I L M ........................... Protein_Len: 40 Strand: - Start: 475 End: 594 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V A D I D R F E D E E K P T S E N F S E I R N V S K E R I P F V A D M A R L N M ........................................................................................................................................................ Protein_Len: 30 Strand: - Start: 411 End: 500 .......................................................................................................................................................................................................................................................................................................................................................................................................................... F E D T G K L S S E N L M P V Y N E S R E F Q T L T E L S M ...................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 299 End: 418 .......................................................................................................................................................................................................................................................................................................... V A D I Y R L E K T D K P S L E S L S E I R N V S K E R I P F V A D M A R F N M ........................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: - Start: 178 End: 309 ................................................................................................................................................................................. S Q I D V S N M E S E N S S S E S S W Y E D A G K L S S E N L M P V Y I D S R E F Q M M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: - Start: 65 End: 181 ................................................................ L H A L G L L W R F A I T Q T L R F I K A R S I L I N K I L L F A L I S R L M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 715 End: 744 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCAAAATCAAAAGTTTGTGTTATACT.. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 47 HP_score: -4.3 Tail_Score: -2.60723 Start: 192 End: 206 Full_Region: AAGATTGGATGTCAA CTGAA TTCAT TTCAG ATTCGTTCGAACTAG ...............................................................................................................................................................................................CTGAATTCATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 72 HP_score: -9.4 Tail_Score: -2.87344 Start: 374 End: 393 Full_Region: gagcaatggatgcag tttttccc ataa gggaaaaa tctgtaaaccggata .....................................................................................................................................................................................................................................................................................................................................................................................tttttcccataagggaaaaa................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 72 HP_score: -9.4 Tail_Score: -2.87344 Start: 550 End: 569 Full_Region: gagcaatggatgcag tttttccc ataa gggaaaaa tctgtaaaccggata .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttttcccataagggaaaaa................................................................................................................................................................................. TransTerm Strand: + Conf: 43 HP_score: -3.4 Tail_Score: -2.61484 Start: 692 End: 704 Full_Region: CCTGACCCGCTTCAC GCAA AACTG TTGC TCCGTTAATTAGTAT ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACTGTTGC.......................................... Find igs database================================================ Query_seq: SSA_2183:SSA_2184|SSA_2183:SSA_2184:Glucose-6-phosphate isomerase, putative:hypothetical protein:<-<-:2182628..2183373 746 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Intra-Species Hit: Count: 1 Min: 1 Max: 746 Len: 746 Subject: NC_009009_SSA_2183_SSA_2184|Glucose-6-phosphate isomerase, putative:hypothetical protein|NEGATIVE:NEGATIVE|[2182628,2183373]|746 HSP 1 e-value: 0.0 bit: 1479.0 Len: 746 Query Start:1 Query End:746 Subject Strand: POSITIVE Subject Start: 1 Subject End: 746 atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt atcgctttcatacttatttagcaagtaatttattgttttaaaacgcttccaatttaattttttataaatgagctaatcctagtagccatctgaaagcaatcgtttgcgtaagtcggaaaattttagccctactaataagaatatttttgattaacaagaaagccaatatgcttcttaagattggatgtcaactgaattcatttcagattcgttcgaactagattcactgctccaatattcatctgcgcctttcaggcttgattcattcaacattggaacgtagatatcgcttcgctcaaactgcatcaatgtacctaagttcttttgtgtccttcggacttaattcactcaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaaaattcatctgtgcctttcaggcttgattcattcaacatcggaacgtagttctcgcttcgctcaaactgcgtcaatgtctctaaactcatcttcctccttcggagttgattcgttaaaagactctatccggtttacagatttttcccttatgggaaaaactgcatccattgctctaagattcatctgcgcctttcaggcttgattcgttaagaggtatagaaaaagagcacacagcttacttcgcttagggctgctggattcctcccctgacccgcttcacgcaaaactgttgctccgttaattagtataacacaaacttttgattttggctaatt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCGCUUUCAUACUUAUUUAGCAAGUAAUUUAUUGUUUUAAAACGCUUCCAAUUUAAUUUUUUAUAAAUGAGCUAAUCCUAGUAGCCAUCUGAAAGCAAUCGUUUGCGUAAGUCGGAAAAUUUUAGCCCUACUAAUAAGAAUAUUUUUGAUUAACAAGAAAGCCAAUAUGCUUCUUAAGAUUGGAUGUCAACUGAAUUCAUUUCAGAUUCGUUCGAACUAGAUUCACUGCUCCAAUAUUCAUCUGCGCCUUUCAGGCUUGAUUCAUUCAACAUUGGAACGUAGAUAUCGCUUCGCUCAAACUGCAUCAAUGUACCUAAGUUCUUUUGUGUCCUUCGGACUUAAUUCACUCAAAGACUCUAUCCGGUUUACAGAUUUUUCCCUUAUGGGAAAAACUGCAUCCAUUGCUCUAAAAUUCAUCUGUGCCUUUCAGGCUUGAUUCAUUCAACAUCGGAACGUAGUUCUCGCUUCGCUCAAACUGCGUCAAUGUCUCUAAACUCAUCUUCCUCCUUCGGAGUUGAUUCGUUAAAAGACUCUAUCCGGUUUACAGAUUUUUCCCUUAUGGGAAAAACUGCAUCCAUUGCUCUAAGAUUCAUCUGCGCCUUUCAGGCUUGAUUCGUUAAGAGGUAUAGAAAAAGAGCACACAGCUUACUUCGCUUAGGGCUGCUGGAUUCCUCCCCUGACCCGCUUCACGCAAAACUGUUGCUCCGUUAAUUAGUAUAACACAAACUUUUGAUUUUGGCUAAUU ............((((((((..(((.((((.((((..............))))..)))).))).))))))))..........((((((......((((((..((((((((((.(((.......((((((((.......((((.............(((((.((......))))))).((.(((((((....(((((.....)))))...))))))).))..))))...((..........(((((((..((((((..((((.....))))..)))))))))))))...(((..((((.....(((.....((.((.(((..(......)..))).))))........................((....(((.((((((((....)))))))))))...))..)))...........((((((((((((((((((((..........((((((((((((((...((...))...))))))))....((((.(.(((..(((...((((...))))..)))..))).).))))....))))))...((((((((((((....)))))))...(((.....)))..........)))))......))))))))))........))))))))))....))))....))).......)).))))))))..(((....)))......)))))).)))))))...))))))..((((.......))))...............))))))... (-175.54) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUAGCCAAAAUCAAAAGUUUGUGUUAUACUAAUUAACGGAGCAACAGUUUUGCGUGAAGCGGGUCAGGGGAGGAAUCCAGCAGCCCUAAGCGAAGUAAGCUGUGUGCUCUUUUUCUAUACCUCUUAACGAAUCAAGCCUGAAAGGCGCAGAUGAAUCUUAGAGCAAUGGAUGCAGUUUUUCCCAUAAGGGAAAAAUCUGUAAACCGGAUAGAGUCUUUUAACGAAUCAACUCCGAAGGAGGAAGAUGAGUUUAGAGACAUUGACGCAGUUUGAGCGAAGCGAGAACUACGUUCCGAUGUUGAAUGAAUCAAGCCUGAAAGGCACAGAUGAAUUUUAGAGCAAUGGAUGCAGUUUUUCCCAUAAGGGAAAAAUCUGUAAACCGGAUAGAGUCUUUGAGUGAAUUAAGUCCGAAGGACACAAAAGAACUUAGGUACAUUGAUGCAGUUUGAGCGAAGCGAUAUCUACGUUCCAAUGUUGAAUGAAUCAAGCCUGAAAGGCGCAGAUGAAUAUUGGAGCAGUGAAUCUAGUUCGAACGAAUCUGAAAUGAAUUCAGUUGACAUCCAAUCUUAAGAAGCAUAUUGGCUUUCUUGUUAAUCAAAAAUAUUCUUAUUAGUAGGGCUAAAAUUUUCCGACUUACGCAAACGAUUGCUUUCAGAUGGCUACUAGGAUUAGCUCAUUUAUAAAAAAUUAAAUUGGAAGCGUUUUAAAACAAUAAAUUACUUGCUAAAUAAGUAUGAAAGCGAU ...((((((((........)))).))))..((((((...(((((((..((((.((((((..((((.....(((....)))...(((((((.((....((((((((((........(((((..((((......(((..(((.....)))...))).......))))....((.(((((((((((((....)))))))).)))))..))..)))))((((((.(((..(((..((((...))))...)))..))).))))))....)))))))))).))..(((((((..........(((((..(.(((((((.(((.....))).(((((..........(((..((.(((((((((((((....)))))))).)))))..)).......((.(((((((.......((((...))))........))))))).)).....))).((((((((.....(((.((.(((((((((((((.(.((......(((.....))).))..).))))))))))).)))))))..))))))))..)))))...)).))))).)..)))))..........((((......))))))))))).....................))))))).......))))..))))))))))..))))))).(((((((((.......)))).)))))...........))))))...((((((............((((((.....))))))..)))))).. (-205.12) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 908 120 71 211 162 NC_009009:SSA_2183|5end_Glucose-6-phosphate_isomerase,_putative_2182537..2182767_NEGATIVE 437 689 644 200 147 NC_009009:SSA_0025|5end_DNA_repair_protein_recO,_putative_29694..29924_POSITIVE 399 499 457 200 158 NC_009009:SSA_1308|5end_hypothetical_protein_1326818..1327048_NEGATIVE 399 690 643 57 11 NC_009009:SSA_0241|5end_Ribosomal_protein_L11_methyltransferase,_putative_234021..234251_POSITIVE 398 690 642 80 15 NC_009009:SSA_0240|5end_Acetyltransferase,_GNAT_family,_putative_233410..233640_POSITIVE 396 707 662 70 16 NC_009009:SSA_1902|5end_tRNA_(guanine-N(7)-)-methyltransferase,_putative_1897391..1897621_NEGATIVE 375 613 571 147 83 NC_009009:SSA_1643|5end_hypothetical_protein_1645269..1645499_NEGATIVE 365 700 652 221 152 NC_009009:SSA_1822|5end_hypothetical_protein_1811125..1811355_NEGATIVE 364 690 642 220 169 NC_009009:SSA_1203|5end_hypothetical_protein_1226985..1227215_POSITIVE 364 246 202 184 139 NC_009009:SSA_0299|5end_hypothetical_protein_292759..292989_POSITIVE 351 609 564 110 53 NC_009009:SSA_0050|5end_Dihydroxyacetone_kinase,_phosphatase_domain_(Dak2),_putative_54612..54842_POSITIVE 350 713 671 70 19 NC_009009:SSA_2101|5end_Amino_acid_ABC_transporter,_periplasmic_amino_acid-binding_protein,_putative_2105393..2105623_NEGATIVE 350 117 71 187 140 NC_009009:SSA_0261|5end_ABC-type_Mn2+/Zn2+_transport_systems,_permease_component,_putative_255468..255698_NEGATIVE 346 690 645 72 21 NC_009009:SSA_1433|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase,_putative_1440817..1441047_NEGATIVE 342 639 591 139 88 NC_009009:SSA_0618|5end_hypothetical_protein_611973..612203_NEGATIVE 341 116 72 196 148 NC_009009:SSA_1414|5end_hypothetical_protein_1425412..1425642_NEGATIVE 340 686 641 231 190 NC_009009:SSA_0467|5end_Cobalt-precorrin-6A_synthase_[deacetylating],_putative_470588..470818_POSITIVE 336 718 672 199 148 NC_009009:SSA_0200|5end_Bifunctional_folate_synthesis_protein,_putative_198918..199148_POSITIVE 333 686 646 59 17 NC_009009:SSA_2279|5end_hypothetical_protein_2281910..2282140_NEGATIVE 333 315 272 170 129 NC_009009:SSA_0629|5end_hypothetical_protein_618967..619197_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 464 620 571 50 3 NC_009009:SSA_1309|3end_RNA-binding_protein_(KH_domain),_putative_1327079..1327229_NEGATIVE 398 690 642 83 18 NC_009009:SSA_0239|3end_7,8-dihydro-8-oxoguanine-triphosphatase,_putative_233493..233643_POSITIVE 396 707 662 73 19 NC_009009:SSA_1903|3end_hypothetical_protein_1897388..1897538_NEGATIVE 388 639 599 41 1 NC_009009:SSA_2094|3end_Conserved_uncharacterized_protein_2097990..2098140_NEGATIVE 363 680 635 143 95 NC_009009:SSA_1960|3end_hypothetical_protein_1956571..1956721_NEGATIVE 351 609 564 99 42 NC_009009:SSA_0049|3end_Dihydroxyacetone_kinase_(Dak1),_putative_54681..54831_POSITIVE 350 713 671 54 3 NC_009009:SSA_2102|3end_Conserved_uncharacterized_protein_2105409..2105559_NEGATIVE 336 718 672 111 60 NC_009009:SSA_0199|3end_GTP_cyclohydrolase_I,_putative_198910..199060_POSITIVE 333 686 646 57 15 NC_009009:SSA_2281|3end_hypothetical_protein_2281912..2282062_NEGATIVE 331 259 220 44 3 NC_009009:SSA_0554|3end_hypothetical_protein_549692..549842_POSITIVE 327 699 651 44 7 NC_009009:SSA_0482|3end_ATP:cobalamin_adenosyl_transferase,_putative_484113..484263_POSITIVE 323 710 669 58 2 NC_009009:SSA_1384|3end_hypothetical_protein_1401715..1401865_NEGATIVE 321 690 643 146 87 NC_009009:SSA_0833|3end_Accessory_secretory_protein_Asp1,_putative_819600..819750_POSITIVE 318 689 641 117 56 NC_009009:SSA_1343|3end_Aspartate_carbamoyltransferase,_putative_1361042..1361192_NEGATIVE 315 623 591 142 110 NC_009009:SSA_0620|3end_hypothetical_protein_611951..612101_NEGATIVE 314 489 448 129 82 NC_009009:SSA_1660|3end_ABC-type_antimicrobial_peptide_transport_system,_ATPase_component,_putative_1656819..1656969_NEGATIVE 314 210 161 57 10 NC_009009:SSA_1608|3end_hypothetical_protein_1613283..1613433_NEGATIVE 313 710 663 63 1 NC_009009:SSA_2142|3end_Argininosuccinate_synthase,_putative_2142216..2142366_NEGATIVE 313 707 661 87 30 NC_009009:SSA_1416|3end_hypothetical_protein_1426520..1426670_NEGATIVE 311 510 465 126 82 NC_009009:SSA_0584|3end_hypothetical_protein_576689..576839_POSITIVE