Origin IGS:
cctgatgctaggactaaactgcaaccgatgataataacggtttagaaaatccagcaattcctgcgtgctaggctctgcaccaaaggtgactcggcaaactctataagattgagcatgttcctgcttgaaaagaccgtgccaaaatccctcttcaaaataaattgtcagcgtcattgaaatcttatccatgacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
agttctctcctttcagtatttgtagtattatagcggaaatgaatgtattttacaagaagagagctttcttgttttttgatttttctacctttcatacaagaaaatccaattcacttatctaagcgagatttcgataaccttgaattttttagaaaatcttgctagactgtagctactaagataaaaacacagttctggttggtagtccagacgcaaaaaaccattttttgtcagtaaccttcctccttggttgtccattcttagggatttttaaaggaggtgctgtcatggataagatttcaatgacgctgacaatttattttgaagagggattttggcacggtcttttcaagcaggaacatgctcaatcttatagagtttgccgagtcacctttggtgcagagcctagcacgcaggaattgctggattttctaaaccgttattatcatcggttgcagtttagtcctagcatcagg

Mask Tandem Repeat Region ================================================
cctgatgctaggactaaactgcaaccgatgataataacggtttagaaaatccagcaattcctgcgtgctaggctctgcaccaaaggtgactcggcaaactctataagattgagcatgttcctgcttgaaaagaccgtgccaaaatccctcttcaaaataaattgtcagcgtcattgaaatcttatccatgacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact

Find is-nt database================================================
Query_seq: SSA_2055:SSA_2056|SSA_2055:SSA_2056:hypothetical protein:Cinnamoyl ester hydrolase, putative:<-->:2058251..2058726 476
cctgatgctaggactaaactgcaaccgatgataataacggtttagaaaatccagcaattcctgcgtgctaggctctgcaccaaaggtgactcggcaaactctataagattgagcatgttcctgcttgaaaagaccgtgccaaaatccctcttcaaaataaattgtcagcgtcattgaaatcttatccatgacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: SSA_2055:SSA_2056|SSA_2055:SSA_2056:hypothetical protein:Cinnamoyl ester hydrolase, putative:<-->:2058251..2058726 476
cctgatgctaggactaaactgcaaccgatgataataacggtttagaaaatccagcaattcctgcgtgctaggctctgcaccaaaggtgactcggcaaactctataagattgagcatgttcctgcttgaaaagaccgtgccaaaatccctcttcaaaataaattgtcagcgtcattgaaatcttatccatgacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: SSA_2055:SSA_2056|SSA_2055:SSA_2056:hypothetical protein:Cinnamoyl ester hydrolase, putative:<-->:2058251..2058726 476
cctgatgctaggactaaactgcaaccgatgataataacggtttagaaaatccagcaattcctgcgtgctaggctctgcaccaaaggtgactcggcaaactctataagattgagcatgttcctgcttgaaaagaccgtgccaaaatccctcttcaaaataaattgtcagcgtcattgaaatcttatccatgacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 4	Min: 1	Max: 189	Len: 189
Subject: UniRef90_Q186X4 Cluster: Hypothetical protein; n=2; Clostridium difficile|Rep: Hypothetical protein - Clostridium difficile (strain 630)
HSP  1	e-value: 1.0E-8	bit: 60.8	Len: 174	Query Start:16	Query End:189	Subject Strand: null	Subject Start: 1	Subject End: 58
............... M  D  K  I  S  M  T  L  T  I  Y  F  E  E  G  F  W  H  G  L  F  K  Q  E  H  A  Q  S  Y  R  V  C  R  V  T  F  G  A  E  P  S  T  Q  E  L  L  D  F  L  N  R  Y  Y  H  R  L  Q  F ...............................................................................................................................................................................................................................................................................................
............... M  D  K  I  S  G  K  L  T  V  L  F  E  E  P  F  W  V  G  I  F  E  R  Q  V  G  K  K  Y  E  A  C  R  V  V  F  G  A  E  P  K  E  V  E  V  Y  E  F  I  L  E  R  F  F  S  L  D  F ...............................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q897W9 Cluster: Conserved protein; n=1; Clostridium tetani|Rep: Conserved protein - Clostridium tetani
HSP  1	e-value: 3.0E-8	bit: 60.1	Len: 180	Query Start:4	Query End:183	Subject Strand: null	Subject Start: 2	Subject End: 61
... K  I  S  M  T  L  T  I  Y  F  E  E  G  F  W  H  G  L  F  K  Q  E  H  A  Q  S  Y  R  V  C  R  V  T  F  G  A  E  P  S  T  Q  E  L  L  D  F  L  N  R  Y  Y  H  R  L  Q  F  S  P  S  I .....................................................................................................................................................................................................................................................................................................
... K  T  S  I  E  L  T  V  F  F  E  D  T  F  W  V  G  V  F  E  R  V  Y  E  G  K  Y  E  V  S  R  V  T  F  G  S  E  P  K  D  Y  E  V  Y  D  F  I  L  K  N  F  N  D  L  R  F  S  N  S  L .....................................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q97IR7 Cluster: Uncharacterized protein, YJDF B.subtilis ortholog; n=1; Clostridium acetobutylicum|Rep: Uncharacterized protein, YJDF B.subtilis ortholog - Clostridium acetobutylicum
HSP  1	e-value: 1.0E-6	bit: 54.7	Len: 180	Query Start:1	Query End:180	Subject Strand: null	Subject Start: 1	Subject End: 60
 I  S  M  T  L  T  I  Y  F  E  E  G  F  W  H  G  L  F  K  Q  E  H  A  Q  S  Y  R  V  C  R  V  T  F  G  A  E  P  S  T  Q  E  L  L  D  F  L  N  R  Y  Y  H  R  L  Q  F  S  P  S  I  R ........................................................................................................................................................................................................................................................................................................
 M  N  I  S  L  T  V  F  F  E  E  P  F  W  V  G  I  F  E  R  T  N  N  G  E  Y  E  V  S  R  I  V  F  G  A  E  P  K  D  Y  E  V  Y  K  F  V  L  N  N  F  R  R  L  H  F  T  K  P  L  K ........................................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q2WGS8 Cluster: Hypothetical protein; n=1; Clostridium beijerincki NCIMB 8052|Rep: Hypothetical protein - Clostridium beijerincki NCIMB 8052
HSP  1	e-value: 3.0E-6	bit: 53.1	Len: 165	Query Start:4	Query End:168	Subject Strand: null	Subject Start: 7	Subject End: 61
... L  T  I  Y  F  E  E  G  F  W  H  G  L  F  K  Q  E  H  A  Q  S  Y  R  V  C  R  V  T  F  G  A  E  P  S  T  Q  E  L  L  D  F  L  N  R  Y  Y  H  R  L  Q  F  S  P  S  I ....................................................................................................................................................................................................................................................................................................................
... L  T  V  L  F  D  D  P  F  W  I  G  V  F  E  S  I  E  N  G  E  Y  K  V  C  K  V  T  F  G  S  E  P  K  D  V  E  V  Y  E  L  I  L  K  N  F  Y  R  L  N  F  S  S  P  V ....................................................................................................................................................................................................................................................................................................................


nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Predict ORF larger than 30AA ================================================
Protein_Len: 42	Strand: +	Start: 49	End: 174
................................................ M  Q  Q  F  L  R  A  R  L  C  T  K  G  D  S  A  N  S  I  R  L  S  M  F  L  L  E  K  T  V  P  K  S  L  F  K  I  N  C  Q  R  H ..............................................................................................................................................................................................................................................................................................................
Protein_Len: 46	Strand: +	Start: 161	End: 298
................................................................................................................................................................ M  V  S  V  I  E  I  L  S  M  T  A  P  P  L  K  I  P  K  N  G  Q  P  R  R  K  V  T  D  K  K  W  F  F  A  S  G  L  P  T  R  T  V  F  L  S ..................................................................................................................................................................................
Protein_Len: 47	Strand: +	Start: 219	End: 359
.......................................................................................................................................................................................................................... M  D  N  Q  G  G  R  L  L  T  K  N  G  F  L  R  L  D  Y  Q  P  E  L  C  F  Y  L  S  S  Y  S  L  A  R  F  S  K  K  F  K  V  I  E  I  S  L  R .....................................................................................................................
Protein_Len: 36	Strand: +	Start: 367	End: 474
.............................................................................................................................................................................................................................................................................................................................................................................. M  G  F  S  C  M  K  G  R  K  I  K  K  Q  E  S  S  L  L  V  K  Y  I  H  F  R  Y  N  T  T  N  T  E  R  R  E ..
Protein_Len: 34	Strand: -	Start: 358	End: 459
..................................................................................................................................................................................................................................................................................................................................................................... I  L  S  N  S  K  R  T  H  F  T  S  F  D  F  F  L  F  A  R  K  K  Y  F  V  N  M  E  A  I  I  S  C  M .................
Protein_Len: 40	Strand: -	Start: 315	End: 434
.......................................................................................................................................................................................................................................................................................................................... C  S  K  R  F  F  E  L  N  D  F  D  R  K  S  L  H  I  P  N  E  Q  I  F  P  L  F  I  L  F  C  S  L  E  R  R  T  F  Y  M ..........................................
Protein_Len: 38	Strand: -	Start: 45	End: 158
............................................ F  I  W  C  N  R  R  A  L  S  Q  V  L  P  S  E  A  F  E  I  L  N  L  M  N  R  S  S  F  V  T  G  F  D  R  K  L  M ..............................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 1	End: 282
 Y  S  Q  A  H  E  Q  K  F  L  G  H  W  F  G  E  E  F  Y  I  T  L  T  M  S  I  K  D  M  V  A  G  G  K  F  I  G  L  F  P  C  G  L  L  F  T  V  S  L  F  H  N  K  A  D  P  S  G  V  M ..................................................................................................................................................................................................

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 91	Start: 421	End: 450
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAAAATACATTCATTTCCGCTATAAT..........................
PromScan Matrix: RpoD-17	Strand: -	Score: 81	Start: 309	End: 338
....................................................................................................................................................................................................................................................................................................................CTTGAATTTTTTAGAAAATCTTGCTAGACT..........................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================
PromScan Matrix: RpoN	Strand: -	Score: 86	Start: 126	End: 142
.............................................................................................................................TTGGCACGGTCTTTTCA..............................................................................................................................................................................................................................................................................................................................................

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 83	HP_score: -3.9	Tail_Score: -5.56112	Start: 406	End: 424	Full_Region: aatgaatgtatttta caagaag agagc tttcttg ttttttgatttttct
.....................................................................................................................................................................................................................................................................................................................................................................................................................caagaagagagctttcttg....................................................

Find igs database================================================
Query_seq: SSA_2055:SSA_2056|SSA_2055:SSA_2056:hypothetical protein:Cinnamoyl ester hydrolase, putative:<-->:2058251..2058726 476
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtagaaaaatcaaaaaacaagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
Intra-Species Hit: Count: 1	Min: 191	Max: 476	Len: 286
Subject: NC_009009_SSA_2055_SSA_2056|hypothetical protein:Cinnamoyl ester hydrolase, putative|NEGATIVE:POSITIVE|[2058251,2058726]|476
HSP  1	e-value: 1.0E-110	bit: 400.0	Len: 202	Query Start:191	Query End:392	Subject Strand: POSITIVE	Subject Start: 191	Subject End: 392
..............................................................................................................................................................................................acagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtag....................................................................................
..............................................................................................................................................................................................acagcacctcctttaaaaatccctaagaatggacaaccaaggaggaaggttactgacaaaaaatggttttttgcgtctggactaccaaccagaactgtgtttttatcttagtagctacagtctagcaagattttctaaaaaattcaaggttatcgaaatctcgcttagataagtgaattggattttcttgtatgaaaggtag....................................................................................
HSP  2	e-value: 3.0E-32	bit: 141.0	Len: 71	Query Start:406	Query End:476	Subject Strand: POSITIVE	Subject Start: 406	Subject End: 476
.....................................................................................................................................................................................................................................................................................................................................................................................................................caagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact
.....................................................................................................................................................................................................................................................................................................................................................................................................................caagaaagctctcttcttgtaaaatacattcatttccgctataatactacaaatactgaaaggagagaact

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
ACAGCACCUCCUUUAAAAAUCCCUAAGAAUGGACAACCAAGGAGGAAGGUUACUGACAAAAAAUGGUUUUUUGCGUCUGGACUACCAACCAGAACUGUGUUUUUAUCUUAGUAGCUACAGUCUAGCAAGAUUUUCUAAAAAAUUCAAGGUUAUCGAAAUCUCGCUUAGAUAAGUGAAUUGGAUUUUCUUGUAUGAAAGGUAGAAAAAUCAAAAAACAAGAAAGCUCUCUUCUUGUAAAAUACAUUCAUUUCCGCUAUAAUACUACAAAUACUGAAAGGAGAGAACU
((((..(((((((......(((........))).....)))))))..(((..(.(((.(((((....)))))..))).)....)))........))))((((((.((((((((.....(((.((((..(((((((((....((.(((((..(((.((...((((((....)))))).)).)))..))))).))......))).)))))).....(((((((.......))))))).................))))....))).....)))))..))).)))))). (-59.30)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AGUUCUCUCCUUUCAGUAUUUGUAGUAUUAUAGCGGAAAUGAAUGUAUUUUACAAGAAGAGAGCUUUCUUGUUUUUUGAUUUUUCUACCUUUCAUACAAGAAAAUCCAAUUCACUUAUCUAAGCGAGAUUUCGAUAACCUUGAAUUUUUUAGAAAAUCUUGCUAGACUGUAGCUACUAAGAUAAAAACACAGUUCUGGUUGGUAGUCCAGACGCAAAAAACCAUUUUUUGUCAGUAACCUUCCUCCUUGGUUGUCCAUUCUUAGGGAUUUUUAAAGGAGGUGCUGU
.(..((..((..((((.((((((..((((.(((..(...................(((..((..((((((((....(((............))).)))))))).))...))).....((((.((((((((((...................).)))))))))))))......)..))).))))...))).))).))))..)).))..)....(((((((.....)))))))(((((.....(((((((....((((........)))).....)))))))))))). (-58.11)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
331	50	8	150	100	NC_009009:SSA_0274|5end_hypothetical_protein_269557..269787_NEGATIVE
291	109	64	101	49	NC_009009:SSA_2274|5end_hypothetical_protein_2275232..2275462_NEGATIVE
290	86	47	149	118	NC_009009:SSA_0950|5end_hypothetical_protein_956302..956532_POSITIVE
286	80	36	64	30	NC_009009:SSA_1307|5end_Trk_transporter_membrane-spanning_protein-K+_transport,_putative_1326270..1326500_NEGATIVE
278	118	71	102	48	NC_009009:SSA_0491|5end_Alpha-ribazole-5'-phosphate_phosphatase,_putative_490961..491191_POSITIVE
276	120	73	203	156	NC_009009:SSA_2357|5end_50S_ribosomal_protein_L9,_putative_2358437..2358667_NEGATIVE
270	110	64	56	9	NC_009009:SSA_1587|5end_hypothetical_protein_1589086..1589316_NEGATIVE
266	45	5	131	97	NC_009009:SSA_0973|5end_hypothetical_protein_980296..980526_POSITIVE
263	128	89	40	1	NC_009009:SSA_1507|5end_ABC-type_lipopolysaccharide_transport_system,_ATPase_component,_putative_1512444..1512674_NEGATIVE
258	109	61	182	124	NC_009009:SSA_0083|5end_hypothetical_protein_85437..85667_POSITIVE
254	115	73	154	116	NC_009009:SSA_1957|5end_Glycosyl_transferase_N-acetylglucosaminyltransferase,_putative_1954670..1954900_NEGATIVE
253	155	113	183	146	NC_009009:SSA_2098|5end_ABC-type_arginine/histidine_transporter,_permease_protein,_putative_2103617..2103847_NEGATIVE
253	120	75	210	153	NC_009009:SSA_1665|5end_hypothetical_protein_1665353..1665583_NEGATIVE
252	109	63	55	15	NC_009009:SSA_0826|5end_hypothetical_protein_805098..805328_POSITIVE
249	91	64	56	22	NC_009009:SSA_0966|5end_Uridine_kinase,_putative_975063..975293_POSITIVE
248	99	64	62	31	NC_009009:SSA_2191|5end_Conserved_uncharacterized_protein_2192049..2192279_POSITIVE
248	133	108	172	148	NC_009009:SSA_1279|5end_Oxidoreductase,_putative_1300832..1301062_NEGATIVE
247	101	63	121	80	NC_009009:SSA_2000|5end_hypothetical_protein_1997469..1997699_NEGATIVE
247	198	153	205	148	NC_009009:SSA_1595|5end_Tellurite_resistance,_putative_1601814..1602044_NEGATIVE
247	99	53	200	157	NC_009009:SSA_1256|5end_NAD-dependent_deacetylase,_putative_1283094..1283324_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
291	109	64	108	56	NC_009009:SSA_2275|3end_hypothetical_protein_2275225..2275375_NEGATIVE
286	80	36	67	33	NC_009009:SSA_1308|3end_hypothetical_protein_1326267..1326417_NEGATIVE
278	118	71	105	51	NC_009009:SSA_0490|3end_Cobalamin_5'-phosphate_synthase,_putative_491044..491194_POSITIVE
277	49	5	146	92	NC_009009:SSA_2269|3end_hypothetical_protein_2269392..2269542_NEGATIVE
271	49	19	36	3	NC_009009:SSA_0497|3end_Nickel_ABC_transporter,_putative_497997..498147_POSITIVE
266	104	64	116	67	NC_009009:SSA_2136|3end_50S_ribosomal_protein_L34,_putative_2137507..2137657_NEGATIVE
266	45	5	119	85	NC_009009:SSA_0972|3end_hypothetical_protein_980364..980514_POSITIVE
263	190	146	88	45	NC_009009:SSA_1949|3end_AliA_protein,_putative_1942403..1942553_NEGATIVE
263	128	89	40	1	NC_009009:SSA_1508|3end_ABC-type_lipopolysaccharide_transport_system,_permease_component,_putative_1512444..1512594_NEGATIVE
263	129	83	105	57	NC_009009:SSA_1259|3end_Purine_nucleoside_phosphorylase,_putative_1284910..1285060_NEGATIVE
261	98	57	143	102	NC_009009:SSA_2340|3end_hypothetical_protein_2341539..2341689_NEGATIVE
251	79	35	151	114	NC_009009:SSA_1808|3end_hypothetical_protein_1791394..1791544_NEGATIVE
248	99	64	51	20	NC_009009:SSA_2190|3end_33_kDa_chaperonin,_putative_2192118..2192268_POSITIVE
247	101	63	140	99	NC_009009:SSA_2001|3end_Hydroxymethylpyrimidine/phosphomethylpyrimidine_kinase,_putative_1997450..1997600_NEGATIVE
245	90	42	127	76	NC_009009:SSA_1783|3end_Xanthosine_triphosphate_pyrophosphatase_(NTPase/HAM1_family),_putative_1768102..1768252_NEGATIVE
244	118	74	94	40	NC_009009:SSA_0010|3end_Cell_division_protein_DivIC,_putative_9872..10022_POSITIVE
243	130	82	39	3	NC_009009:SSA_1008|3end_Galactokinase,_putative_1011114..1011264_POSITIVE
242	129	84	111	59	NC_009009:SSA_2364|3end_Immunodominant_staphylococcal_antigen_A_precursor,_putative_2366442..2366592_NEGATIVE
240	39	3	88	40	NC_009009:SSA_1313|3end_hypothetical_protein_1329715..1329865_NEGATIVE
237	80	39	82	42	NC_009009:SSA_1116|3end_hypothetical_protein_1142752..1142902_POSITIVE