Origin IGS:
cagccaaattaattgtcttgaccgacgaataaagcgacttctttcaaggattcgaccataaggaaacagttggcagattctataaaagtgtcgatgtgattcggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
agttagtacctcttttctaaatatatacgttcattataatacaatttcaatcacttttcaatcattttagtgcgacattttaattgatatgtcgcgtttatcagcgtcaaagaacagtttcaggcagcggtatatctttgccatatcccagcccagacactctggcgactctgagtgattatcaagaaaggcgtccagcaacatcttaaagcctcccgtgcaaaaagtaaataaatagtgtttttcctgtatgcctgtcacacggctaaaagaccgcttgaccaaatcttccagaaaattatagcagatattatgtaccagctctgtgtagcgagtctgatgagcgtgccgaatcacatcgacacttttatagaatctgccaactgtttccttatggtcgaatccttgaaagaagtcgctttattcgtcggtcaagacaattaatttggctg

Mask Tandem Repeat Region ================================================
cagccaaattaattgtcttgaccgacgaataaagcgacttctttcaaggattcgaccataaggaaacagttggcagattctataaaagtgtcgatgtgattcggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact

Find is-nt database================================================
Query_seq: SSA_2030:SSA_2031|SSA_2030:SSA_2031:hypothetical protein:Conserved domain uncharacterized protein:<-->:2036841..2037292 452
cagccaaattaattgtcttgaccgacgaataaagcgacttctttcaaggattcgaccataaggaaacagttggcagattctataaaagtgtcgatgtgattcggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: SSA_2030:SSA_2031|SSA_2030:SSA_2031:hypothetical protein:Conserved domain uncharacterized protein:<-->:2036841..2037292 452
cagccaaattaattgtcttgaccgacgaataaagcgacttctttcaaggattcgaccataaggaaacagttggcagattctataaaagtgtcgatgtgattcggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 9	Min: 1	Max: 102	Len: 102
Subject: gi|94988372|ref|YP_596473.1| transposase [Streptococcus pyogenes MGAS9429]
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: gi|94989329|ref|YP_597430.1| transposase [Streptococcus pyogenes MGAS9429]
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: gi|94991652|ref|YP_599751.1| Transposase [Streptococcus pyogenes MGAS2096]
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: gi|94992254|ref|YP_600353.1| Transposase [Streptococcus pyogenes MGAS2096]
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: gi|94993217|ref|YP_601316.1| Transposase [Streptococcus pyogenes MGAS2096]
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q1J9N9 Cluster: Transposase; n=5; Streptococcus pyogenes serotype M12|Rep: Transposase - Streptococcus pyogenes serotype M12 (strain MGAS2096)
HSP  1	e-value: 3.0E-10	bit: 61.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  Q  L  F  P  C  G  H  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q93RH3 Cluster: Putative transposase; n=2; Streptococcus criceti|Rep: Putative transposase - Streptococcus criceti
HSP  1	e-value: 2.0E-9	bit: 58.5	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  L  C  H  L  F  P  C  G  Q  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  V  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: UniRef90_Q9L9Q9 Cluster: Putative transposase; n=3; Streptococcus agalactiae|Rep: Putative transposase - Streptococcus agalactiae
HSP  1	e-value: 2.0E-9	bit: 58.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  H  L  F  P  C  G  C  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................

Subject: IS|ISSa4.aa1 
HSP  1	e-value: 2.0E-9	bit: 58.2	Len: 102	Query Start:1	Query End:102	Subject Strand: null	Subject Start: 65	Subject End: 98
 E  S  H  R  H  F  Y  R  I  C  Q  L  F  P  Y  G  R  I  L  E  R  S  R  F  I  R  R  S  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................
 K  S  Q  R  H  F  Y  R  I  C  H  L  F  P  C  G  C  L  L  E  R  S  R  F  N  R  R  A  R  Q  L  I  W  L ..............................................................................................................................................................................................................................................................................................................................................................


Find nr database================================================
Query_seq: SSA_2030:SSA_2031|SSA_2030:SSA_2031:hypothetical protein:Conserved domain uncharacterized protein:<-->:2036841..2037292 452
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Predict ORF larger than 30AA ================================================
Protein_Len: 38	Strand: +	Start: 217	End: 330
........................................................................................................................................................................................................................ M  Y  L  L  F  A  R  E  A  L  R  C  C  W  T  P  F  L  I  I  T  Q  S  R  Q  S  V  W  A  G  I  W  Q  R  Y  T  A  A ..........................................................................................................................
Protein_Len: 60	Strand: +	Start: 96	End: 383
............................................................................................... M  I  R  H  A  H  Q  T  R  Y  T  E  L  V  H  N  I  C  Y  N  F  L  E  D  L  V  K  R  S  F  S  R  V  T  G  I  Q  E  K  H  Y  L  F  T  F  C  T  G  G  F  K  M  L  L  D  A  F  L  D  N .....................................................................
Protein_Len: 33	Strand: -	Start: 278	End: 376
..................................................................................................................................................................................................................................................................................... E  S  D  G  S  H  R  P  Q  S  I  A  F  I  Y  R  Q  R  F  S  N  K  S  A  S  L  R  S  M  D  I  L  M ............................................................................
Protein_Len: 41	Strand: -	Start: 247	End: 369
...................................................................................................................................................................................................................................................... S  T  A  P  R  R  E  Q  Y  D  S  L  T  A  L  T  D  P  S  P  Y  P  L  S  I  G  S  G  S  V  T  R  Q  R  Q  Y  V  R  C  I  M ...................................................................................
Protein_Len: 60	Strand: -	Start: 12	End: 218
........... E  K  L  S  E  V  M  L  F  C  N  A  S  E  I  F  T  D  I  H  N  P  V  S  M  L  S  A  V  C  L  Q  Y  M  I  D  A  I  I  K  Q  F  I  Q  D  L  P  R  K  A  T  H  C  A  Y  L  F  F  V  M ..........................................................................................................................................................................................................................................
Protein_Len: 43	Strand: -	Start: 1	End: 129
 L  W  I  L  Q  R  S  R  R  I  F  R  S  R  E  L  I  R  G  Y  P  F  L  Q  C  I  R  Y  F  H  R  H  S  E  A  R  E  D  S  E  S  C  M ...................................................................................................................................................................................................................................................................................................................................

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 91	Start: 391	End: 420
......................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAAGTGATTGAAATTGTATTATAAT................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Predict TransTerm conf > 70================================================

Find igs database================================================
Query_seq: SSA_2030:SSA_2031|SSA_2030:SSA_2031:hypothetical protein:Conserved domain uncharacterized protein:<-->:2036841..2037292 452
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
Intra-Species Hit: Count: 1	Min: 105	Max: 452	Len: 348
Subject: NC_009009_SSA_2030_SSA_2031|hypothetical protein:Conserved domain uncharacterized protein|NEGATIVE:POSITIVE|[2036841,2037292]|452
HSP  1	e-value: 0.0	bit: 690.0	Len: 348	Query Start:105	Query End:452	Subject Strand: POSITIVE	Subject Start: 105	Subject End: 452
........................................................................................................cacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact
........................................................................................................cacgctcatcagactcgctacacagagctggtacataatatctgctataattttctggaagatttggtcaagcggtcttttagccgtgtgacaggcatacaggaaaaacactatttatttactttttgcacgggaggctttaagatgttgctggacgcctttcttgataatcactcagagtcgccagagtgtctgggctgggatatggcaaagatataccgctgcctgaaactgttctttgacgctgataaacgcgacatatcaattaaaatgtcgcactaaaatgattgaaaagtgattgaaattgtattataatgaacgtatatatttagaaaagaggtactaact

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
CACGCUCAUCAGACUCGCUACACAGAGCUGGUACAUAAUAUCUGCUAUAAUUUUCUGGAAGAUUUGGUCAAGCGGUCUUUUAGCCGUGUGACAGGCAUACAGGAAAAACACUAUUUAUUUACUUUUUGCACGGGAGGCUUUAAGAUGUUGCUGGACGCCUUUCUUGAUAAUCACUCAGAGUCGCCAGAGUGUCUGGGCUGGGAUAUGGCAAAGAUAUACCGCUGCCUGAAACUGUUCUUUGACGCUGAUAAACGCGACAUAUCAAUUAAAAUGUCGCACUAAAAUGAUUGAAAAGUGAUUGAAAUUGUAUUAUAAUGAACGUAUAUAUUUAGAAAAGAGGUACUAACU
.((.(((.((((.(((........))))))).....(((((.(((.....(((((((.........((((.(((((......))))).)))).......))))))).(((...((((.(((((((((.((.(..((((.((.((......)).)).))))..).))..(((((.((((.(((.((((.....))))...((((((.((((..(......)..))))......))))))..))).)))).....(((((((..........))))))).......)))))))))))))).))))..)))............))).))))).......)))))....... (-83.09)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AGUUAGUACCUCUUUUCUAAAUAUAUACGUUCAUUAUAAUACAAUUUCAAUCACUUUUCAAUCAUUUUAGUGCGACAUUUUAAUUGAUAUGUCGCGUUUAUCAGCGUCAAAGAACAGUUUCAGGCAGCGGUAUAUCUUUGCCAUAUCCCAGCCCAGACACUCUGGCGACUCUGAGUGAUUAUCAAGAAAGGCGUCCAGCAACAUCUUAAAGCCUCCCGUGCAAAAAGUAAAUAAAUAGUGUUUUUCCUGUAUGCCUGUCACACGGCUAAAAGACCGCUUGACCAAAUCUUCCAGAAAAUUAUAGCAGAUAUUAUGUACCAGCUCUGUGUAGCGAGUCUGAUGAGCGUG
.........................(((((((((((............((((((.................(((((((.((....)).))))))).....((((.(((..............(((((.((....)).)))))..........((((.....)))).))).))))))))))...((((...((.....))....)))).....(((.(.((((...(((......(((((((((...(((((.....((((..((((.....).)))..))))....((.....))....))))).)))))))))......)))...))))).)))..))))))))))) (-71.50)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
717	36	1	231	196	NC_009009:SSA_2030|5end_hypothetical_protein_2036750..2036980_NEGATIVE
377	230	183	41	6	NC_009009:SSA_2301|5end_S-layer_protein/_peptidoglycan_endo-beta-N-acetylglucosaminidase,_putative_2303268..2303498_NEGATIVE
373	213	174	56	8	NC_009009:SSA_0698|5end_Peptide_chain_release_factor_3,_putative_680383..680613_POSITIVE
359	214	175	80	31	NC_009009:SSA_1011|5end_hypothetical_protein_1014134..1014364_POSITIVE
357	179	132	104	44	NC_009009:SSA_0843|5end_hypothetical_protein_827682..827912_POSITIVE
342	103	61	228	183	NC_009009:SSA_1164|5end_hypothetical_protein_1191138..1191368_NEGATIVE
341	198	152	62	10	NC_009009:SSA_1433|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase,_putative_1440817..1441047_NEGATIVE
341	212	176	61	13	NC_009009:SSA_0433|5end_Methenyl_tetrahydrofolate_cyclohydrolase,_putative_435654..435884_NEGATIVE
339	228	182	53	6	NC_009009:SSA_0837|5end_Glucosyltransferase,_putative_823902..824132_POSITIVE
337	165	121	80	37	NC_009009:SSA_1901|5end_Conserved_uncharacterized_protein_1896599..1896829_NEGATIVE
334	240	193	86	25	NC_009009:SSA_1634|5end_Heme_utilization/adhesion_exoprotein,_putative_1637062..1637292_NEGATIVE
330	169	127	82	31	NC_009009:SSA_1859|5end_Penicillin-binding_protein-like_factor_A/_recombinase,_putative_1853704..1853934_POSITIVE
330	160	118	53	17	NC_009009:SSA_0493|5end_ABC-type_dipeptide/nickel_transport_system,_periplasmic_component,_putative_492868..493098_POSITIVE
328	211	176	78	36	NC_009009:SSA_0173|5end_23S_rRNA_m1G745_methyltransferase,_putative_170535..170765_NEGATIVE
327	227	181	197	134	NC_009009:SSA_0481|5end_Cobyric_acid_synthase,_putative_481962..482192_POSITIVE
326	186	150	90	54	NC_009009:SSA_1037|5end_Cytidine_deaminase,_putative_1052118..1052348_POSITIVE
325	226	181	170	117	NC_009009:SSA_2324|5end_hypothetical_protein_2330109..2330339_NEGATIVE
323	209	171	212	174	NC_009009:SSA_2072|5end_Phosphatidate_cytidylyltransferase,_putative_2075603..2075833_NEGATIVE
323	199	158	151	95	NC_009009:SSA_1379|5end_hypothetical_protein_1398528..1398758_NEGATIVE
322	50	3	57	10	NC_009009:SSA_2385|5end_hypothetical_protein_1752542..1752772_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
386	200	156	149	108	NC_009009:SSA_2340|3end_hypothetical_protein_2341539..2341689_NEGATIVE
361	232	195	47	3	NC_009009:SSA_0188|3end_hypothetical_protein_191111..191261_POSITIVE
357	179	132	132	72	NC_009009:SSA_0842|3end_Effector_of_murein_hydrolase_LrgA/holin-like_protein,_putative_827790..827940_POSITIVE
326	186	150	103	67	NC_009009:SSA_1036|3end_Deoxyribose-phosphate_aldolase,_putative_1052211..1052361_POSITIVE
323	199	158	141	85	NC_009009:SSA_1380|3end_hypothetical_protein_1398538..1398688_NEGATIVE
318	245	201	140	109	NC_009009:SSA_2064|3end_hypothetical_protein_2064879..2065029_NEGATIVE
315	227	182	122	72	NC_009009:SSA_1265|3end_50S_ribosomal_protein_L19,_putative_1290184..1290334_NEGATIVE
314	198	158	150	108	NC_009009:SSA_0602|3end_ABC-type_cobalt_transport_system,_ATPase_component,_putative_591683..591833_POSITIVE
313	200	157	53	3	NC_009009:SSA_2200|3end_Firmicutes_transcriptional_repressor_of_class_III_stress_genes_(CtsR),_putative_2201109..2201259_NEGATIVE
313	169	123	121	54	NC_009009:SSA_1417|3end_SAM-dependent_methyltransferase,_putative_1427304..1427454_NEGATIVE
307	230	181	59	9	NC_009009:SSA_1868|3end_ABC-type_arginine/histidine_transport_system,_permease_component,_putative_1863096..1863246_NEGATIVE
304	210	161	148	100	NC_009009:SSA_1418|3end_Conserved_uncharacterized_protein_1428139..1428289_NEGATIVE
303	218	175	150	111	NC_009009:SSA_1682|3end_hypothetical_protein_1676130..1676280_NEGATIVE
303	227	182	91	24	NC_009009:SSA_0484|3end_Glutamyl-tRNA_reductase,_putative_485825..485975_POSITIVE
300	209	161	145	98	NC_009009:SSA_0854|3end_hypothetical_protein_841813..841963_POSITIVE
300	234	197	144	101	NC_009009:SSA_0062|3end_Aldose_1-epimerase,_putative_64858..65008_POSITIVE
299	104	62	98	59	NC_009009:SSA_0707|3end_Lactose_phosphotransferase_system_transcriptional_repressor,_putative_694041..694191_POSITIVE
297	209	170	132	90	NC_009009:SSA_2211|3end_Transmembrane_protein,_putative_2211499..2211649_NEGATIVE
295	237	193	44	1	NC_009009:SSA_0836|3end_SecA-like_protein,_putative_823969..824119_POSITIVE
294	208	162	148	104	NC_009009:SSA_2035|3end_Conserved_uncharacterized_protein_2039425..2039575_NEGATIVE