Origin IGS: tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcactcttttttcggatagtgtttttaaagttatgatgtaaaatgccgcaattaaaacactatacatcataatcggaggatagagaattaaggacagaatcaatcccactcctttaattattaggtcaggtatcaataacttcctatattgtgcggtagcttcaagtaattctttctgatctatattgggtttatcaattactttatgtaaaaaccagtttgctaccgttgaaacaataacgatcagtccataaaagagctgtgccgtatgattcatgaaatgactactaactattccagtagcatagggcataaatgaaacaaaaaataaaagatacaaattctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagaatttgtatcttttattttttgtttcatttatgccctatgctactggaatagttagtagtcatttcatgaatcatacggcacagctcttttatggactgatcgttattgtttcaacggtagcaaactggtttttacataaagtaattgataaacccaatatagatcagaaagaattacttgaagctaccgcacaatataggaagttattgatacctgacctaataattaaaggagtgggattgattctgtccttaattctctatcctccgattatgatgtatagtgttttaattgcggcattttacatcataactttaaaaacactatccgaaaaaagagtgaataactaaaaaacggtgaccaaagttaggtgtattattttaatgcttacagacctaaactattcccctatttataatttattgattcatattttatgaaattaaaaagtagatatcgttctgaaaatccttgatattacgctgtttttagtccaactgaaatccatactttccaaaccaggtcttaagaaagctcgtaaagcatcacaattctcaaaacgttaatcaacacgattatatcaaactttacagacattcaagagtttgctcttggatgtcttttttgatgtaaaaagcaatttaacctaaaaatacaccaagattcaaaatcttggtgta Mask Tandem Repeat Region ================================================ tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcactcttttttcggatagtgtttttaaagttatgatgtaaaatgccgcaattaaaacactatacatcataatcggaggatagagaattaaggacagaatcaatcccactcctttaattattaggtcaggtatcaataacttcctatattgtgcggtagcttcaagtaattctttctgatctatattgggtttatcaattactttatgtaaaaaccagtttgctaccgttgaaacaataacgatcagtccataaaagagctgtgccgtatgattcatgaaatgactactaactattccagtagcatagggcataaatgaaacaaaaaataaaagatacaaattctt Find is-nt database================================================ Query_seq: SSA_2025:SSA_2388|SSA_2025:SSA_2388:Conserved hypothetical GTPase protein:hypothetical protein:-><-:2031073..2031756 684 tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcactcttttttcggatagtgtttttaaagttatgatgtaaaatgccgcaattaaaacactatacatcataatcggaggatagagaattaaggacagaatcaatcccactcctttaattattaggtcaggtatcaataacttcctatattgtgcggtagcttcaagtaattctttctgatctatattgggtttatcaattactttatgtaaaaaccagtttgctaccgttgaaacaataacgatcagtccataaaagagctgtgccgtatgattcatgaaatgactactaactattccagtagcatagggcataaatgaaacaaaaaataaaagatacaaattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_2025:SSA_2388|SSA_2025:SSA_2388:Conserved hypothetical GTPase protein:hypothetical protein:-><-:2031073..2031756 684 tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcactcttttttcggatagtgtttttaaagttatgatgtaaaatgccgcaattaaaacactatacatcataatcggaggatagagaattaaggacagaatcaatcccactcctttaattattaggtcaggtatcaataacttcctatattgtgcggtagcttcaagtaattctttctgatctatattgggtttatcaattactttatgtaaaaaccagtttgctaccgttgaaacaataacgatcagtccataaaagagctgtgccgtatgattcatgaaatgactactaactattccagtagcatagggcataaatgaaacaaaaaataaaagatacaaattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_2025:SSA_2388|SSA_2025:SSA_2388:Conserved hypothetical GTPase protein:hypothetical protein:-><-:2031073..2031756 684 tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcactcttttttcggatagtgtttttaaagttatgatgtaaaatgccgcaattaaaacactatacatcataatcggaggatagagaattaaggacagaatcaatcccactcctttaattattaggtcaggtatcaataacttcctatattgtgcggtagcttcaagtaattctttctgatctatattgggtttatcaattactttatgtaaaaaccagtttgctaccgttgaaacaataacgatcagtccataaaagagctgtgccgtatgattcatgaaatgactactaactattccagtagcatagggcataaatgaaacaaaaaataaaagatacaaattctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 343 Max: 684 Len: 342 Subject: UniRef90_Q8DUQ8 Cluster: Hypothetical protein; n=1; Streptococcus mutans|Rep: Hypothetical protein - Streptococcus mutans HSP 1 e-value: 2.0E-11 bit: 71.6 Len: 342 Query Start:343 Query End:684 Subject Strand: null Subject Start: 77 Subject End: 192 ...................................................................................................................................................................................................................................................................................................................................................... K N L Y L L F F V S F M P Y A T G I V S S H F M N H T A Q L F Y G L I V I V S T V A N W F L H K V I D K P N I D Q K E L L E A - - - - T A Q Y R K L L I P D L I I K G V G L I L S L I L Y P P I M M Y S V L I A A F Y I I T L K T L S E K R ...................................................................................................................................................................................................................................................................................................................................................... Q S L L M L F F S S F F P Y A T N L V A S D F N N S A A Q S F Y G S I V I A I S C S N L W M Q S - - D L S H I K E N Q K A E A I Q T F S V K K S R W L K L D M F L K T L G L F L S L T I W L S A M M Y T V L F V S L A I V F P N S I T E E K tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 425 End: 514 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ M K D R I N P T P L I I R S G I N N F L Y C A V A S S N S F .......................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 334 End: 678 ............................................................................................................................................................................................................................................................................................................................................. E L L E K Q D I N P K D I V K H L F W N A V T S V I V I L G Y F L Q A T H N M F H S S V I G T A Y P M F S V F F L L Y M ...... Protein_Len: 36 Strand: - Start: 118 End: 225 ..................................................................................................................... R K S F Q S A K R A K K L G P K S L I S K L Q V L F L T I D L I K L V M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 346 End: 375 .........................................................................................................................................................................................................................................................................................................................................................TTTTTCGGATAGTGTTTTTAAAGTTATGAT..................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 12 End: 41 ...........TTTGAATCTTGGTGTATTTTTAGGTTAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -13.6 Tail_Score: -5.21709 Start: 61 End: 88 Full_Region: atatcaaactttaca gacattcaagag tttg ctcttggatgtc ttttttgatgtaaaa ............................................................gacattcaagagtttgctcttggatgtc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 40 HP_score: -2.5 Tail_Score: -2.72263 Start: 369 End: 410 Full_Region: ttctctatcctccga ttatgatgtatagtgtt ttaattgc ggcattttacatcataa ctttaaaaacactat ................................................................................................................................................................................................................................................................................................................................................................................ttatgatgtatagtgttttaattgcggcattttacatcataa.................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SSA_2025:SSA_2388|SSA_2025:SSA_2388:Conserved hypothetical GTPase protein:hypothetical protein:-><-:2031073..2031756 684 tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 342 Len: 342 Subject: NC_009009_SSA_2025_SSA_2388|Conserved hypothetical GTPase protein:hypothetical protein|POSITIVE:NEGATIVE|[2031073,2031756]|684 HSP 1 e-value: 0.0 bit: 678.0 Len: 342 Query Start:1 Query End:342 Subject Strand: POSITIVE Subject Start: 1 Subject End: 342 tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcac...................................................................................................................................................................................................................................................................................................................................................... tacaccaagattttgaatcttggtgtatttttaggttaaattgctttttacatcaaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaaggattttcagaacgatatctactttttaatttcataaaatatgaatcaataaattataaataggggaatagtttaggtctgtaagcattaaaataatacacctaactttggtcaccgttttttagttattcac...................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 3 Min: 55 Max: 209 Len: 155 Subject: smit_SMT_250_SMT_251|site-specific recombinase, phage integrase family:hypothetical protein|NEGATIVE:NEGATIVE|[185347,185939]|593 HSP 1 e-value: 2.0E-40 bit: 168.0 Len: 113 Query Start:97 Query End:209 Subject Strand: NEGATIVE Subject Start: 210 Subject End: 322 ................................................................................................ttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggtttggaaagtatggatttcagttggactaaaaacagcgtaatatcaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ttgatataatcgtattgattaacgttttgagaattgtgaagctttacgagctttcttaagacctggtttggaaagtatgagtttcagttggactaaaaatagtgtaaaatcaa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_006449_str0101_str0102|hypothetical protein:integrase/recombinase, phage integrase family, truncated|POSITIVE:NEGATIVE|[109731,111052]|1322 HSP 1 e-value: 4.0E-32 bit: 141.0 Len: 111 Query Start:55 Query End:165 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 287 ......................................................aaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggttt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................aaaaaagacacccaagagataactcttgaatgtcttgaaacattgatataatcgtattgattaacgttttgagaattgtgaagctttacgagctttcttaagatctggttt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_006448_stu0101_stu0102|hypothetical protein:integrase/recombinase, phage integrase family|POSITIVE:NEGATIVE|[110942,111277]|336 HSP 1 e-value: 4.0E-32 bit: 141.0 Len: 111 Query Start:55 Query End:165 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 287 ......................................................aaaaaagacatccaagagcaaactcttgaatgtctgtaaagtttgatataatcgtgttgattaacgttttgagaattgtgatgctttacgagctttcttaagacctggttt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................aaaaaagacacccaagagataactcttgaatgtcttgaaacattgatataatcgtattgattaacgttttgagaattgtgaagttttacgagctttcttaagacctggttt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAAAGACAUCCAAGAGCAAACUCUUGAAUGUCUGUAAAGUUUGAUAUAAUCGUGUUGAUUAACGUUUUGAGAAUUGUGAUGCUUUACGAGCUUUCUUAAGACCUGGUUUGGAAAGUAUGGAUUUCAGUUGGACUAAAAACAGCGUAAUAUCAA .....((((((.((((((....)))))).)))))).......(((((((...((((((.......((((((((((((((((....))))))...)))))))))).(((((..(.((((....))))...)..)))))..)))).))..))))))) (-39.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUGAUAUUACGCUGUUUUUAGUCCAACUGAAAUCCAUACUUUCCAAACCAGGUCUUAAGAAAGCUCGUAAAGCAUCACAAUUCUCAAAACGUUAAUCAACACGAUUAUAUCAAACUUUACAGACAUUCAAGAGUUUGCUCUUGGAUGUCUUUUUU (((((((..((.(((((((((.....))))).......(((.((......))....)))...(((.....)))........................))))))...))))))).......(((((((((((((....)))))))))))))..... (-31.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 288 100 51 104 54 NC_009009:SSA_1218|5end_DNA_repair_protein_radC,_putative_1240459..1240689_NEGATIVE 286 118 73 177 126 NC_009009:SSA_0945|5end_Phosphate_import_ATP-binding_protein_pstB_1,_putative_952605..952835_POSITIVE 286 148 105 41 1 NC_009009:SSA_0925|5end_ABC-type_antimicrobial_peptide_transport_system,_ATPase_component,_putative_934749..934979_POSITIVE 263 123 83 50 1 NC_009009:SSA_0400|5end_hypothetical_protein_398251..398481_NEGATIVE 257 148 101 47 4 NC_009009:SSA_0705|5end_hypothetical_protein_690950..691180_NEGATIVE 256 146 104 140 99 NC_009009:SSA_0875|5end_Rod_shape_determining_protein_(cell-cycle_protein),_putative_868928..869158_POSITIVE 256 120 71 225 171 NC_009009:SSA_0443|5end_Possible_ABC-type_efflux_pump_permease_component,_putative_442877..443107_POSITIVE 254 109 64 128 80 NC_009009:SSA_1341|5end_Carbamoyl-phosphate_synthase_large_chain,_putative_1359827..1360057_NEGATIVE 252 134 101 60 22 NC_009009:SSA_0865|5end_hypothetical_protein_856378..856608_POSITIVE 251 147 105 226 185 NC_009009:SSA_1662|5end_NADH-dependent_oxidoreductase,_putative_1659422..1659652_NEGATIVE 248 135 92 139 97 NC_009009:SSA_0088|5end_V-type_sodium_ATPase,_subunit_C,_putative_88930..89160_POSITIVE 247 113 72 62 21 NC_009009:SSA_1551|5end_Transcriptional_accessory_ribonuclease_(YqgFc,_S1),_putative_1554784..1555014_NEGATIVE 247 97 51 176 131 NC_009009:SSA_1016|5end_Phosphoenolpyruvate_synthase,_putative_1019602..1019832_POSITIVE 247 129 83 138 93 NC_009009:SSA_0495|5end_ABC-type_oligopeptide/nickel_transport_system,_ATPase_component,_putative_495186..495416_POSITIVE 246 111 73 159 129 NC_009009:SSA_1521|5end_Phosphoenolpyruvate_carboxylase,_putative_1530683..1530913_NEGATIVE 246 112 76 56 13 NC_009009:SSA_0776|5end_Glucose-1-phosphate_adenylyltransferase,_putative_758298..758528_POSITIVE 245 129 83 200 154 NC_009009:SSA_1572|5end_hypothetical_protein_1575908..1576138_NEGATIVE 243 134 93 183 132 NC_009009:SSA_0938|5end_hypothetical_protein_946587..946817_POSITIVE 240 111 71 84 38 NC_009009:SSA_0089|5end_V-type_sodium_ATPase,_subunit_F,_putative_89930..90160_POSITIVE 239 136 92 145 95 NC_009009:SSA_1581|5end_Metal-binding_ABC_transporter_(probably_hemin),_putative_1583662..1583892_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 825 110 61 140 91 NC_009009:SSA_2033|3end_30S_ribosomal_protein_S9,_putative_2038387..2038537_NEGATIVE 302 127 81 83 21 NC_009009:SSA_1062|3end_50S_ribosomal_protein_L27,_putative_1078657..1078807_POSITIVE 286 118 73 116 65 NC_009009:SSA_0944|3end_Phosphate_import_ATP-binding_protein_pstB_2,_putative_952624..952774_POSITIVE 281 148 110 40 4 NC_009009:SSA_0924|3end_ABC-type_antimicrobial_peptide_transport_system,_permease_component,_putative_934828..934978_POSITIVE 262 116 73 49 10 NC_009009:SSA_1689|3end_hypothetical_protein_1681945..1682095_NEGATIVE 256 146 104 127 86 NC_009009:SSA_0874|3end_hypothetical_protein_868995..869145_POSITIVE 254 109 64 104 56 NC_009009:SSA_1342|3end_Carbamoyl-phosphate_synthase_small_chain,_putative_1359851..1360001_NEGATIVE 251 147 105 62 21 NC_009009:SSA_1663|3end_Collagen-binding_protein_A_1659586..1659736_NEGATIVE 248 135 92 128 86 NC_009009:SSA_0087|3end_V-type_sodium_ATPase,_subunit_E,_putative_88999..89149_POSITIVE 247 129 83 141 96 NC_009009:SSA_0494|3end_ABC-type_dipeptide/oligopeptide/nickel_transport_system,_ATPase_component,_putative_495269..495419_POSITIVE 246 111 73 112 82 NC_009009:SSA_1522|3end_Cell_division_protein_FtsW,_putative_1530730..1530880_NEGATIVE 246 133 91 118 88 NC_009009:SSA_1339|3end_Pneumococcal_histidine_triad_protein_D_precursor,_putative_1351879..1352029_NEGATIVE 246 112 76 49 6 NC_009009:SSA_0775|3end_1,4-alpha-glucan_branching_enzyme,_putative_758371..758521_POSITIVE 245 129 83 54 8 NC_009009:SSA_1573|3end_hypothetical_protein_1576054..1576204_NEGATIVE 245 145 104 53 9 NC_009009:SSA_0868|3end_hypothetical_protein_860675..860825_NEGATIVE 241 47 6 39 2 NC_009009:SSA_2025|3end_Conserved_hypothetical_GTPase_protein_2031012..2031162_POSITIVE 240 111 71 97 51 NC_009009:SSA_0088|3end_V-type_sodium_ATPase,_subunit_C,_putative_90023..90173_POSITIVE 239 136 92 89 39 NC_009009:SSA_1579|3end_ABC-type_Fe3+-siderophore_transport_system,_ATPase_component,_putative_1583686..1583836_POSITIVE 236 117 72 75 17 NC_009009:SSA_0132|3end_DNA-directed_RNA_polymerase,_alpha_chain,_putative_122164..122314_POSITIVE 234 127 81 144 93 NC_009009:SSA_1375|3end_Multidrug_ABC_transporter,_ATPase_and_permease_components,_putative_1393085..1393235_NEGATIVE