Origin IGS: tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaattactattttctttaatgcagaagatggtacaccaaaatctaataagacactcaaattttcatcaactccttcatgttctagttttgcaatataaattgaataatctgctgtctcatttctcaaaatataatttacaatactttgtagaatagcaagcatttttggtatttcatactttgcttgattcttaatgaaataaaaaacatttgatactgcttcattaagaagttcttccttttcattaagaagttcttccttttccttataacaattttccttcttagaattaaggtattcatactctaattgtattgcatttgaaagattattgttgacaatcagctgacatttagtcgcagtatatttatatccttctccttctattccttttaatcctttatttataattctaagcgtttctgataaaatattataatcaggcataggtgcgcgccagcttagtatttcaagcaactcgctatttgaaattaagtagttgaataacgatttctgcttttccacattatagtaattatttttaaatatctctattaaatcttcaggaattccctctaccagtttttgaaattcttcttgtttactctgttttaaatcgttctcatcaatatttaataaaatttcactttgcaaattatcatcttgatcaaccacagggatatctataaattcatcctttctttcaggaggattatcaaaataaaaaatattcccagtataatacttcatcattcggcctgctcgaccttttatattattaaaatcaaagtaagttattttacgagttcctttgaacatatcataaataactacattttttgcgattgaatttacaccttcaattaaagaagtagttgcaaaaataatttttaaatcaccactattaaagtaatccaactgactattgacgatatggcgagggtactgaccattgtgtaggccaatcccattctttaaatattttttaagaatccaatttgaagaaatattttcatcaatccaatcaaaaactggaaaagatttctctttctctaaagaaaattgttctatgtactttttagcaagatcttcggacctttttggagaacgaacataaactatcgtaggttccgaaaaatcatttagcaattgaaataatttttcttccttttcgtcttctgattcataagagatctgttttattttttgatttactaaactatattctgttctgtaaaattgaatatcatattttcttataaaatcttctgagatattttcaactataggagtaagaaatagtaattgaggtttgaatttcatgattttataaaaagcaatatttaaatgactcactctatcatcttttttactattagctattttataaaattcatcaataataaacaaatcaatatcatttatatttgggaaaatatctaaaactcgttcacttgtcagtataaacaaatttttttctccaatcttttgatgagtattaactacaatattataatagtcagaataatgattaagttttcgtcttgtttcatcgatcagtgcaagcgttggttgaattatcaatatattttcatactttctccttgctacaaattcctcaattaataagcttatcctaagactctgcaggagtcagaaactactaaatctcgcgtcttatttgatctaatcctatcaaagcttttgttcataatgaaaaagaacactatttccttgtttgttaacaaattgggatttatgatattctctacgaattaatgcagcaagatctaaatctccgccctcctttaaataagggtaaaatccaaaaccttcaattaaacttgaaaagactggctgcacttcagaatgaacatactcccaattttcaattacatcaatgagtttctttctatcattacttactgcaatctcttttgctaaattaaaacaaaagtcaaaatctctcaattcc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ggaattgagagattttgacttttgttttaatttagcaaaagagattgcagtaagtaatgatagaaagaaactcattgatgtaattgaaaattgggagtatgttcattctgaagtgcagccagtcttttcaagtttaattgaaggttttggattttacccttatttaaaggagggcggagatttagatcttgctgcattaattcgtagagaatatcataaatcccaatttgttaacaaacaaggaaatagtgttctttttcattatgaacaaaagctttgataggattagatcaaataagacgcgagatttagtagtttctgactcctgcagagtcttaggataagcttattaattgaggaatttgtagcaaggagaaagtatgaaaatatattgataattcaaccaacgcttgcactgatcgatgaaacaagacgaaaacttaatcattattctgactattataatattgtagttaatactcatcaaaagattggagaaaaaaatttgtttatactgacaagtgaacgagttttagatattttcccaaatataaatgatattgatttgtttattattgatgaattttataaaatagctaatagtaaaaaagatgatagagtgagtcatttaaatattgctttttataaaatcatgaaattcaaacctcaattactatttcttactcctatagttgaaaatatctcagaagattttataagaaaatatgatattcaattttacagaacagaatatagtttagtaaatcaaaaaataaaacagatctcttatgaatcagaagacgaaaaggaagaaaaattatttcaattgctaaatgatttttcggaacctacgatagtttatgttcgttctccaaaaaggtccgaagatcttgctaaaaagtacatagaacaattttctttagagaaagagaaatcttttccagtttttgattggattgatgaaaatatttcttcaaattggattcttaaaaaatatttaaagaatgggattggcctacacaatggtcagtaccctcgccatatcgtcaatagtcagttggattactttaatagtggtgatttaaaaattatttttgcaactacttctttaattgaaggtgtaaattcaatcgcaaaaaatgtagttatttatgatatgttcaaaggaactcgtaaaataacttactttgattttaataatataaaaggtcgagcaggccgaatgatgaagtattatactgggaatattttttattttgataatcctcctgaaagaaaggatgaatttatagatatccctgtggttgatcaagatgataatttgcaaagtgaaattttattaaatattgatgagaacgatttaaaacagagtaaacaagaagaatttcaaaaactggtagagggaattcctgaagatttaatagagatatttaaaaataattactataatgtggaaaagcagaaatcgttattcaactacttaatttcaaatagcgagttgcttgaaatactaagctggcgcgcacctatgcctgattataatattttatcagaaacgcttagaattataaataaaggattaaaaggaatagaaggagaaggatataaatatactgcgactaaatgtcagctgattgtcaacaataatctttcaaatgcaatacaattagagtatgaataccttaattctaagaaggaaaattgttataaggaaaaggaagaacttcttaatgaaaaggaagaacttcttaatgaagcagtatcaaatgttttttatttcattaagaatcaagcaaagtatgaaataccaaaaatgcttgctattctacaaagtattgtaaattatattttgagaaatgagacagcagattattcaatttatattgcaaaactagaacatgaaggagttgatgaaaatttgagtgtcttattagattttggtgtaccatcttctgcattaaagaaaatagtaattccgagagatgtcgaaacaatcaactatgtgaaagaaaacttagaacttttaagtaatagcttatcaaattatgagattgcaaaattaagtcaaatataagctaggtaagtgattttatactaaaataatttataaaatggaggataaaaa Mask Tandem Repeat Region ================================================ tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaattactattttctttaatgcagaagatggtacaccaaaatctaataagacactcaaattttcatcaactccttcatgttctagttttgcaatataaattgaataatctgctgtctcatttctcaaaatataatttacaatactttgtagaatagcaagcatttttggtatttcatactttgcttgattcttaatgaaataaaaaacatttgatactgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttataacaattttccttcttagaattaaggtattcatactctaattgtattgcatttgaaagattattgttgacaatcagctgacatttagtcgcagtatatttatatccttctccttctattccttttaatcctttatttataattctaagcgtttctgataaaatattataatcaggcataggtgcgcgccagcttagtatttcaagcaactcgctatttgaaattaagtagttgaataacgatttctgcttttccacattatagtaattatttttaaatatctctattaaatcttcaggaattccctctaccagtttttgaaattcttcttgtttactctgttttaaatcgttctcatcaatatttaataaaatttcactttgcaaattatcatcttgatcaaccacagggatatctataaattcatcctttctttcaggaggattatcaaaataaaaaatattcccagtataatacttcatcattcggcctgctcgaccttttatattattaaaatcaaagtaagttattttacgagttcctttgaacatatcataaataactacattttttgcgattgaatttacaccttcaattaaagaagtagttgcaaaaataatttttaaatcaccactattaaagtaatccaactgactattgacgatatggcgagggtactgaccattgtgtaggccaatcccattctttaaatattttttaagaatccaatttgaagaaatattttcatcaatccaatcaaaaactggaaaagatttctctttctctaaagaaaattgttctatgtactttttagcaagatcttcggacctttttggagaacgaacataaactatcgtaggttccgaaaaatcatttagcaattgaaataatttttcttccttttcgtcttctgattcataagagatctgttttattttttgatttactaaactatattctgttctgtaaaattgaatatcatattttcttataaaatcttctgagatattttcaactataggagtaagaaatagtaattgaggtttgaatttcatgattttataaaaagcaatatttaaatgactcactctatcatcttttttactattagctattttataaaattcatcaataataaacaaatcaatatcatttatatttgggaaaatatctaaaactcgttcacttgtcagtataaacaaatttttttctccaatcttttgatgagtattaactacaatattataatagtcagaataatgattaagttttcgtcttgtttcatcgatcagtgcaagcgttggttgaattatcaatatattttcatactttctccttgctacaaattcctcaattaataagcttatcctaagactctgcaggagtcagaaactactaaatctcgcgtcttatttgatctaatcctatcaaagcttttgttcataatgaaaaagaacactatttccttgtttgttaacaaattgggatttatgatattctctacgaattaatgcagcaagatctaaatctccgccctcctttaaataagggtaaaatccaaaaccttcaattaaacttgaaaagactggctgcacttcagaatgaacatactcccaattttcaattacatcaatgagtttctttctatcattacttactgcaatctcttttgctaaattaaaacaaaagtcaaaatctctcaattcc Find is-nt database================================================ Query_seq: SSA_1884:SSA_1888|SSA_1884:SSA_1888:Conserved uncharacterized protein:hypothetical protein:<-<-:1883055..1885179 2125 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaattactattttctttaatgcagaagatggtacaccaaaatctaataagacactcaaattttcatcaactccttcatgttctagttttgcaatataaattgaataatctgctgtctcatttctcaaaatataatttacaatactttgtagaatagcaagcatttttggtatttcatactttgcttgattcttaatgaaataaaaaacatttgatactgcttcattaagaagttcttccttttcattaagaagttcttccttttccttataacaattttccttcttagaattaaggtattcatactctaattgtattgcatttgaaagattattgttgacaatcagctgacatttagtcgcagtatatttatatccttctccttctattccttttaatcctttatttataattctaagcgtttctgataaaatattataatcaggcataggtgcgcgccagcttagtatttcaagcaactcgctatttgaaattaagtagttgaataacgatttctgcttttccacattatagtaattatttttaaatatctctattaaatcttcaggaattccctctaccagtttttgaaattcttcttgtttactctgttttaaatcgttctcatcaatatttaataaaatttcactttgcaaattatcatcttgatcaaccacagggatatctataaattcatcctttctttcaggaggattatcaaaataaaaaatattcccagtataatacttcatcattcggcctgctcgaccttttatattattaaaatcaaagtaagttattttacgagttcctttgaacatatcataaataactacattttttgcgattgaatttacaccttcaattaaagaagtagttgcaaaaataatttttaaatcaccactattaaagtaatccaactgactattgacgatatggcgagggtactgaccattgtgtaggccaatcccattctttaaatattttttaagaatccaatttgaagaaatattttcatcaatccaatcaaaaactggaaaagatttctctttctctaaagaaaattgttctatgtactttttagcaagatcttcggacctttttggagaacgaacataaactatcgtaggttccgaaaaatcatttagcaattgaaataatttttcttccttttcgtcttctgattcataagagatctgttttattttttgatttactaaactatattctgttctgtaaaattgaatatcatattttcttataaaatcttctgagatattttcaactataggagtaagaaatagtaattgaggtttgaatttcatgattttataaaaagcaatatttaaatgactcactctatcatcttttttactattagctattttataaaattcatcaataataaacaaatcaatatcatttatatttgggaaaatatctaaaactcgttcacttgtcagtataaacaaatttttttctccaatcttttgatgagtattaactacaatattataatagtcagaataatgattaagttttcgtcttgtttcatcgatcagtgcaagcgttggttgaattatcaatatattttcatactttctccttgctacaaattcctcaattaataagcttatcctaagactctgcaggagtcagaaactactaaatctcgcgtcttatttgatctaatcctatcaaagcttttgttcataatgaaaaagaacactatttccttgtttgttaacaaattgggatttatgatattctctacgaattaatgcagcaagatctaaatctccgccctcctttaaataagggtaaaatccaaaaccttcaattaaacttgaaaagactggctgcacttcagaatgaacatactcccaattttcaattacatcaatgagtttctttctatcattacttactgcaatctcttttgctaaattaaaacaaaagtcaaaatctctcaattcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1884:SSA_1888|SSA_1884:SSA_1888:Conserved uncharacterized protein:hypothetical protein:<-<-:1883055..1885179 2125 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaattactattttctttaatgcagaagatggtacaccaaaatctaataagacactcaaattttcatcaactccttcatgttctagttttgcaatataaattgaataatctgctgtctcatttctcaaaatataatttacaatactttgtagaatagcaagcatttttggtatttcatactttgcttgattcttaatgaaataaaaaacatttgatactgcttcattaagaagttcttccttttcattaagaagttcttccttttccttataacaattttccttcttagaattaaggtattcatactctaattgtattgcatttgaaagattattgttgacaatcagctgacatttagtcgcagtatatttatatccttctccttctattccttttaatcctttatttataattctaagcgtttctgataaaatattataatcaggcataggtgcgcgccagcttagtatttcaagcaactcgctatttgaaattaagtagttgaataacgatttctgcttttccacattatagtaattatttttaaatatctctattaaatcttcaggaattccctctaccagtttttgaaattcttcttgtttactctgttttaaatcgttctcatcaatatttaataaaatttcactttgcaaattatcatcttgatcaaccacagggatatctataaattcatcctttctttcaggaggattatcaaaataaaaaatattcccagtataatacttcatcattcggcctgctcgaccttttatattattaaaatcaaagtaagttattttacgagttcctttgaacatatcataaataactacattttttgcgattgaatttacaccttcaattaaagaagtagttgcaaaaataatttttaaatcaccactattaaagtaatccaactgactattgacgatatggcgagggtactgaccattgtgtaggccaatcccattctttaaatattttttaagaatccaatttgaagaaatattttcatcaatccaatcaaaaactggaaaagatttctctttctctaaagaaaattgttctatgtactttttagcaagatcttcggacctttttggagaacgaacataaactatcgtaggttccgaaaaatcatttagcaattgaaataatttttcttccttttcgtcttctgattcataagagatctgttttattttttgatttactaaactatattctgttctgtaaaattgaatatcatattttcttataaaatcttctgagatattttcaactataggagtaagaaatagtaattgaggtttgaatttcatgattttataaaaagcaatatttaaatgactcactctatcatcttttttactattagctattttataaaattcatcaataataaacaaatcaatatcatttatatttgggaaaatatctaaaactcgttcacttgtcagtataaacaaatttttttctccaatcttttgatgagtattaactacaatattataatagtcagaataatgattaagttttcgtcttgtttcatcgatcagtgcaagcgttggttgaattatcaatatattttcatactttctccttgctacaaattcctcaattaataagcttatcctaagactctgcaggagtcagaaactactaaatctcgcgtcttatttgatctaatcctatcaaagcttttgttcataatgaaaaagaacactatttccttgtttgttaacaaattgggatttatgatattctctacgaattaatgcagcaagatctaaatctccgccctcctttaaataagggtaaaatccaaaaccttcaattaaacttgaaaagactggctgcacttcagaatgaacatactcccaattttcaattacatcaatgagtttctttctatcattacttactgcaatctcttttgctaaattaaaacaaaagtcaaaatctctcaattcc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 154 Max: 2124 Len: 1971 Subject: gi|89109426|ref|AP_003206.1| hypothetical protein [Escherichia coli W3110] HSP 1 e-value: 1.0E-52 bit: 205.0 Len: 1971 Query Start:154 Query End:2124 Subject Strand: null Subject Start: 16 Subject End: 683 ......................................................................................................................................................... E L R D F D F C F N L A K E I A - - V S N D - - R K K L I D V I E N W E Y V H S E V Q P V F S S L I E G F G F Y P Y L K - E G G D L D L A A L I R R E Y H K S Q F V N K Q G N S V L F H Y E Q K L * * D * I K * D A X X X X X X X X X X X X X X X X I E E F V A R R K Y E N I L I I Q P T L A L I D E T R R K L N H - Y S D Y Y N I V V N T H Q K I - G E K N L F I L T S E R V L D I F P N I N D I D L F I I D E F Y K I A N S K - - - - - - - - K D D R V S H L N I A F Y K I M K F K P Q L L F L T P I V E N I S E D F I R K Y D I Q F Y R T E Y S L V N Q K I K Q I S Y E S E D E K E E - - K L F Q L L N D F S E P T I V Y V R S P K R S E D L A K K Y I E Q F S L E K E K S F P V F D W I D E N I S S N W I L K K Y L K N G I G L H N G Q Y P R H I V N S Q L D Y F N S G D L K I I F A T T S L I E G V N S I A K N V V I Y D M F K G T R K I T Y F D F N N I K G R A G R M M K Y Y T G N I F Y F D N P P E - R K D E F I D I P V V D Q D D N L Q S E I L L N I D E N D L K Q S K Q E E F Q K L V - - E G I P E D L I E I F K N N Y Y N V E K - - - Q K S L F N Y X X X X X X X X X X X S W R A P M P D Y N I L S E T L R I I N K G L - K G I E G E G Y K Y T A T K C Q L I V N N N L S N A I Q L E Y E Y L X X X X X X X X X X X X X X X X X X X X X X X E A V S N V F Y F I K N Q A K Y E I P K M L A I L Q S I V N Y - - I L R - - N E T A D Y S I Y I A K L E H E G V D E N L S V L L D F G V P S S A L K K I V . ......................................................................................................................................................... D F S S F N Y L F A V N K L L S N P V S Y D L G R D L I V R A L D S R E R F - S E H T T I L K N M V R K S G L F P Y L K K E F T S L T P D D L R V L E L Y R T P F - - - - S D G Y V F H S M Q F H I F D L L K - S G Q N V V L S A P T S M G K S A I V D S L L G M G T L K R L V L V V P T V A L A D E T R R R L Q E R F G D R Y Q I I H H S S Q V C H S D Q A V Y V L T Q E R V N E R - D D I V D I D L F V I D E F Y K L A F R Q L K S G D I D H Q D E R V I E L N I A L S K L L K V S R Q F Y L T G P F V N S I R G L E K L G Y P H T F V S T D F N T V A L D V K T F G I K A N D D K A K L K A L G E I A H A C V D A T I I Y C K S P T V A G L V A R E L I - R L G H G T P T E N P H V D W V S E E F D A D W D Y T V A L R N G I G L H F G A L P R A L Q Q Y T A D Q F N A G K L R F L L C T S T I I E G V N T I A K N V V I Y D N R D G T R S I D K F T H G N I K G R A G R M G V H F V G K I F C L E E I P E D N L N Q E V D I P L G I Q G I D T P I N L L A S V Q P D H L S E F S Q D R F D E V F I N D R V S I D L V K - - K H S Y F R V E Q F E M L Q S M F E M M D D N E F S S L V F H W - - - T P A T N F L K T F A K I I A R L V P H T F S R N G V P V K P T D V M I A - - - K L A G Y L S A E - S Y S E Y L K N Q I D Y A R Q W I S E G E K R T L S I A L N N D L K L I T N T F G Y T L P K V L S L M E D V V K H H A V K R G I R S K V D Y T H V K L A F E S F H L P P G V N A L E E I G I P I Q T L H R L V . Find nr database================================================ Query_seq: SSA_1884:SSA_1888|SSA_1884:SSA_1888:Conserved uncharacterized protein:hypothetical protein:<-<-:1883055..1885179 2125 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 128 End: 244 ............................................................................................................................... M I V S T S L G I T I F F N A E D G T P K S N K T L K F S S T P S C S S F A I ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 132 End: 302 ................................................................................................................................... M F R H L S E L L F S L M Q K M V H Q N L I R H S N F H Q L L H V L V L Q Y K L N N L L S H F S K Y N L Q Y F V E ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 696 End: 836 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L L N L Q E F P L P V F E I L L V Y S V L N R S H Q Y L I K F H F A N Y H L D Q P Q G Y L ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 840 End: 929 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H P F F Q E D Y Q N K K Y S Q Y N T S S F G L L D L L Y Y ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 799 End: 996 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q I I I L I N H R D I Y K F I L S F R R I I K I K N I P S I I L H H S A C S T F Y I I K I K V S Y F T S S F E H I I N ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: + Start: 1103 End: 1264 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M C R P I P F F K Y F L R I Q F E E I F S S I Q S K T G K D F S F S K E N C S M Y F L A R S S D L F G E R T ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 1299 End: 1409 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E I I F L P F R L L I H K R S V L F F D L L N Y I L F C K I E Y H I F L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 1498 End: 1590 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T H S I I F F T I S Y F I K F I N N K Q I N I I Y I W E N I ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 1550 End: 1639 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M I N K S I S F I F G K I S K T R S L V S I N K F F S P I F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 1621 End: 1773 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F F S N L L M S I N Y N I I I V R I M I K F S S C F I D Q C K R W L N Y Q Y I F I L S P C Y K F L N ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 1695 End: 1787 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M F H R S V Q A L V E L S I Y F H T F S L L Q I P Q L I S L S .................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: + Start: 1727 End: 1837 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M I N I F S Y F L L A T N S S I N K L I L R L C R S Q K L L N L A S Y L I ................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: + Start: 1795 End: 1926 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q E S E T T K S R V L F D L I L S K L L F I M K K N T I S L F V N K L G F M I F S T N ....................................................................................................................................................................................................... Protein_Len: 51 Strand: + Start: 1899 End: 2051 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G I Y D I L Y E L M Q Q D L N L R P P L N K G K I Q N L Q L N L K R L A A L Q N E H T P N F Q L H Q .......................................................................... Protein_Len: 60 Strand: - Start: 1849 End: 2121 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L D G G E K L Y P Y F G F G E I L S S F V P Q V E S H V Y E W N E I V D I L K K R D N S V A I E K A L N F C F D F D R M .... Protein_Len: 43 Strand: - Start: 1785 End: 1913 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ G L V R C S D S V V L D R T K N S R I R D F S K N M I F F F V I E K N T L L N P N I M .................................................................................................................................................................................................................... Protein_Len: 55 Strand: - Start: 288 End: 452 ............................................................................................................................................................................................................................................................................................... L V K Y F L L C K Q Y K M S Q K I R L S I F F M Q Y Q K M L F N K R K M L F N K R K R I V I K R R L I L T N M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 98 End: 196 ................................................................................................. K F T R L K R E C L Q N N R C R E S N S N E K I C F I T C W F R M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 55 End: 1800 ...................................................... N K E G I K Q H T N V V I N Y Y D S Y H N L K R R T E D I L A L T P Q I I L I N E Y K R R A V F E E I L L S I R L S Q M ..................................................................................................................................................................................................................................................................................................................................... tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 86 Start: 553 End: 582 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATAATTCTAAGCGTTTCTGATAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 1638 End: 1667 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAGTATTAACTACAATATTATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 676 End: 705 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGATATTTAAAAATAATTACTATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 1909 End: 1938 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTGCATTAATTCGTAGAGAATATCAT........................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1532 End: 1561 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTATTATTGATGAATTTTATAAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 2093 End: 2122 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAGATTTTGACTTTTGTTTTAATTT... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 40 HP_score: -2.4 Tail_Score: -2.52464 Start: 2078 End: 2091 Full_Region: CTATCATTACTTACT GCAA TCTCTT TTGC TAAATTAAAACAAAA .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCTCTTTTGC.................................. Find igs database================================================ Query_seq: SSA_1884:SSA_1888|SSA_1884:SSA_1888:Conserved uncharacterized protein:hypothetical protein:<-<-:1883055..1885179 2125 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnc Intra-Species Hit: Count: 1 Min: 1 Max: 153 Len: 153 Subject: NC_009009_SSA_1884_SSA_1888|Conserved uncharacterized protein:hypothetical protein|NEGATIVE:NEGATIVE|[1883055,1885179]|2125 HSP 1 e-value: 1.0E-80 bit: 303.0 Len: 153 Query Start:1 Query End:153 Subject Strand: POSITIVE Subject Start: 1 Subject End: 153 tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttttatcctccattttataaattattttagtataaaatcacttacctagcttatatttgacttaattttgcaatctcataatttgataagctattacttaaaagttctaagttttctttcacatagttgattgtttcgacatctctcggaat.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUUAUCCUCCAUUUUAUAAAUUAUUUUAGUAUAAAAUCACUUACCUAGCUUAUAUUUGACUUAAUUUUGCAAUCUCAUAAUUUGAUAAGCUAUUACUUAAAAGUUCUAAGUUUUCUUUCACAUAGUUGAUUGUUUCGACAUCUCUCGGAAU ......(((...((((((((...........)))))))).(((((..((((((((...(((...............))).......))))))))..(((....)))..))))).............(((((.....))))).......))).. (-15.26) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUCCGAGAGAUGUCGAAACAAUCAACUAUGUGAAAGAAAACUUAGAACUUUUAAGUAAUAGCUUAUCAAAUUAUGAGAUUGCAAAAUUAAGUCAAAUAUAAGCUAGGUAAGUGAUUUUAUACUAAAAUAAUUUAUAAAAUGGAGGAUAAAAA .(((((...(((((....)).))).....(((((((....(((((((...)))))))....(((((((...(((((.((((.........))))...)))))....)))))))..)))))))..................)))))........ (-18.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 727 140 91 231 182 NC_009009:SSA_1884|5end_Conserved_uncharacterized_protein_1882964..1883194_NEGATIVE 270 148 104 78 21 NC_009009:SSA_0539|5end_PduO_protein,_putative_534233..534463_POSITIVE 267 148 111 86 41 NC_009009:SSA_2370|5end_Zn-dependemt_peptidase_(insulinase),_M16_family,_putative_2372422..2372652_NEGATIVE 248 149 104 200 149 NC_009009:SSA_1448|5end_ATP_phosphoribosyltransferase_regulatory_subunit,_putative_1450817..1451047_NEGATIVE 223 149 106 77 26 NC_009009:SSA_2107|5end_Glucosamine--fructose-6-phosphate_aminotransferase_[isomerizing],_putative_2111106..2111336_NEGATIVE 221 140 96 111 64 NC_009009:SSA_1644|5end_hypothetical_protein_1645617..1645847_NEGATIVE 219 148 103 52 8 NC_009009:SSA_1855|5end_hypothetical_protein_1852051..1852281_NEGATIVE 213 150 111 48 8 NC_009009:SSA_0475|5end_CbiK_protein,_putative_477723..477953_POSITIVE 212 148 121 96 54 NC_009009:SSA_2161|5end_NTP_pyrophosphohydrolases_including_oxidative_damage_repair_enzymes,_putative_2160600..2160830_NEGATIVE 210 149 106 156 123 NC_009009:SSA_0637|5end_Tryptophan_synthase_beta_chain,_putative_625719..625949_POSITIVE 209 148 101 101 53 NC_009009:SSA_0380|5end_Enzyme_of_poly-gamma-glutamate_biosynthesis_(capsule_formation),_putative_370916..371146_POSITIVE 207 149 110 124 76 NC_009009:SSA_1492|5end_hypothetical_protein_1498954..1499184_NEGATIVE 205 140 91 187 127 NC_009009:SSA_0075|5end_ABC_sugar_transporter,_permease_protein,_putative_78963..79193_POSITIVE 205 47 7 146 99 NC_009009:SSA_0069|5end_Hypothetical_protein,_possibly_membrane-associated_73037..73267_POSITIVE 204 147 105 83 41 NC_009009:SSA_1749|5end_Pyruvate_formate-lyase-activating_enzyme,_putative_1735426..1735656_NEGATIVE 200 150 106 77 38 NC_009009:SSA_0512|5end_Nicotinate-nucleotide--dimethylbenzimidazole_phosphoribosyltransferase,_putative_510439..510669_POSITIVE 199 149 112 45 2 NC_009009:SSA_1576|5end_Catabolite_control_protein_A,_putative_1580181..1580411_NEGATIVE 198 150 106 42 3 NC_009009:SSA_0636|5end_N-(5'-phosphoribosyl)anthranilate_isomerase,_putative_625184..625414_POSITIVE 195 150 115 129 96 NC_009009:SSA_0146|5end_DNA_repair_ATPase,_putative_139686..139916_POSITIVE 193 139 91 137 87 NC_009009:SSA_1174|5end_Dihydrolipoamide_dehydrogenase,_putative_1202854..1203084_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 267 148 111 86 41 NC_009009:SSA_2371|3end_Zn-dependent_peptidase,_putative_2372422..2372572_NEGATIVE 248 149 104 144 93 NC_009009:SSA_1449|3end_Histidinol-phosphate/aromatic_aminotransferase_and_cobyric_acid_decarboxylase,_putative_1450873..1451023_NEGATIVE 241 150 104 145 98 NC_009009:SSA_0427|3end_DNA-binding_transcriptional_activator,_SARP_family,_putative_427615..427765_POSITIVE 227 150 102 66 19 NC_009009:SSA_2008|3end_Molecular_chaperone_GrpE_(HSP-70_cofactor),_putative_2009526..2009676_NEGATIVE 221 140 96 127 80 NC_009009:SSA_1645|3end_hypothetical_protein_1645601..1645751_NEGATIVE 221 93 51 82 39 NC_009009:SSA_1106|3end_IgA-specific_metalloendopeptidase_1131678..1131828_POSITIVE 213 149 113 127 97 NC_009009:SSA_0492|3end_NADH-dependent_flavin_oxidoreductase,_putative_492771..492921_POSITIVE 210 150 104 141 81 NC_009009:SSA_0739|3end_Carbamate_kinase,_putative_722114..722264_POSITIVE 207 78 38 44 3 NC_009009:SSA_2030|3end_hypothetical_protein_2036514..2036664_NEGATIVE 207 149 110 149 101 NC_009009:SSA_1493|3end_hypothetical_protein_1498929..1499079_NEGATIVE 206 77 37 64 21 NC_009009:SSA_1682|3end_hypothetical_protein_1676130..1676280_NEGATIVE 205 149 103 126 82 NC_009009:SSA_1297|3end_Nuclease_subunit_of_the_excinuclease_complex,_subunit_C,_putative_1313141..1313291_NEGATIVE 205 140 91 119 59 NC_009009:SSA_0074|3end_ABC_transporter_substrate-binding_protein-sugar_transport,_putative_78975..79125_POSITIVE 200 150 106 114 75 NC_009009:SSA_0511|3end_Propanediol_utilization_kinase,_putative_510556..510706_POSITIVE 196 77 35 91 38 NC_009009:SSA_0753|3end_Foldase_protein_prsA_precursor,_putative_736055..736205_POSITIVE 196 140 97 84 37 NC_009009:SSA_0037|3end_Phosphoribosylamine-glycine_ligase;_phosphoribosyl_glycinamide_synthetase_(GARS),_putative_45614..45764_POSITIVE 195 150 123 34 2 NC_009009:SSA_0474|3end_Uroporphyrin-III_C-methyltransferase/uroporphyrinogen-III_synthase,_putative_477789..477939_POSITIVE 194 130 86 121 82 NC_009009:SSA_1952|3end_ABC-type_Fe-S_cluster_assembly_transporter,_permease_component,_putative_1948212..1948362_NEGATIVE 193 139 91 58 8 NC_009009:SSA_1175|3end_Acetoin_dehydrogenase_complex,_E2_component,_dihydrolipoamide_acetyltransferase,_putative_1202933..1203083_NEGATIVE 192 140 92 131 85 NC_009009:SSA_1409|3end_DTDP-glucose-4,6-dehydratase,_putative_1421209..1421359_NEGATIVE