Origin IGS: agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attcaaaaatctagcataccagtgattaggttaaaaaagttaacaaaagctggaaacaatcctaatgaaatgaaatagctgaattcaaccctaaatttgttttactatatcaagttgattatgtgggtttggaatccgttattgggacttaattaatttctgtacacaggtagaatatcgtttatcgtttggctatctcagacattccccaagaaatcatagcagcagttgaaaaagaagttatcggctattgataaccgctctgctgtttctcaaacccaataactagaaagaaatttatgacacaagaaacaactcaaacgtcctaggggagatcaggctctctggagctcggcgtatgtacttcgctaacagagattgtcgccaatatcaattgtaccgatagtgagattgccagcaaaacagctgaacttgtaaacatgctgggcctgctcagaggcacaacgtctgaagctcaggaagaactggagaagtttttggatgagtttgagaaataatatttaataaacatcctaccacaaaccaatcaaactggtgcattctgcgctagttctgattggttttttcttatttccggatgttaaactgtatttgttctgtatttcaaataaatagagacttgaaacttcattatatagcttttcttgactataacgttcgtcattattacgtttttgttacatttgttaggagtgtatgaattgtcagaaaatttttattataatatggtttataaataaagtaaggagacttct Mask Tandem Repeat Region ================================================ agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Find is-nt database================================================ Query_seq: SSA_1882:SSA_1883|SSA_1882:SSA_1883:Subtilisin-like serine proteases, putative:hypothetical protein:<-<-:1880888..1881663 776 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1882:SSA_1883|SSA_1882:SSA_1883:Subtilisin-like serine proteases, putative:hypothetical protein:<-<-:1880888..1881663 776 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1882:SSA_1883|SSA_1882:SSA_1883:Subtilisin-like serine proteases, putative:hypothetical protein:<-<-:1880888..1881663 776 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 216 End: 320 ....................................................................................................................................................................................................................... M H Q F D W F V V G C L L N I I S Q T H P K T S P V L P E L Q T L C L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 256 End: 405 ............................................................................................................................................................................................................................................................... M L F L K L I Q K L L Q F F L S F R R C A S E Q A Q H V Y K F S C F A G N L T I G T I D I G D N L C ................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 314 End: 448 ......................................................................................................................................................................................................................................................................................................................... M P L S R P S M F T S S A V L L A I S L S V Q L I L A T I S V S E V H T P S S R E P D L P ........................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 548 End: 643 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S S S H N R P S H R L Y G F S L R Y E V Q T C F N I L D W Y R M ..................................................................................................................................... Protein_Len: 36 Strand: - Start: 374 End: 481 ..................................................................................................................................................................................................................................................................................................................................................................................... R Y L Q Y Q R C D R N A F Y M R R A G S L R I E G L V N S N N R T D Y M ....................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 262 End: 432 ..................................................................................................................................................................................................................................................................... K E F E D L F K E L E E Q A E S T T G R L L G L M N V L E A T K S A I E S D T C N I N A V I E T L S T C V G L E M ........................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 47 Strand: - Start: 59 End: 199 .......................................................... V S R V F T V F V Y Y H R V N Y D L F A I Y H L K L D R N I Q F V S C I C N L M R F Y S F V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: - Start: 19 End: 111 .................. K Y V M N Y Y F N E S L E Y V G L L H L L F T I I V F T I T M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 31 End: 60 ..............................TATGAATTGTCAGAAAATTTTTATTATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 26 End: 55 .........................ATTGTCAGAAAATTTTTATTATAATATGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 83 End: 112 ..................................................................................CTTGACTATAACGTTCGTCATTATTACGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 83 HP_score: -9.3 Tail_Score: -3.97388 Start: 196 End: 233 Full_Region: GGAAATAAGAAAAAA CCAATCAGAACTAGCGCA GAA TGCACCAGTTTGATTGG TTTGTGGTAGGATGT ...................................................................................................................................................................................................CCAATCAGAACTAGCGCAGAATGCACCAGTTTGATTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.7 Tail_Score: -5.72254 Start: 196 End: 233 Full_Region: acatcctaccacaaa ccaatcaaactggtgca ttc tgcgctagttctgattgg ttttttcttatttcc ...................................................................................................................................................................................................ccaatcaaactggtgcattctgcgctagttctgattgg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_1882:SSA_1883|SSA_1882:SSA_1883:Subtilisin-like serine proteases, putative:hypothetical protein:<-<-:1880888..1881663 776 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Intra-Species Hit: Count: 1 Min: 1 Max: 776 Len: 776 Subject: NC_009009_SSA_1882_SSA_1883|Subtilisin-like serine proteases, putative:hypothetical protein|NEGATIVE:NEGATIVE|[1880888,1881663]|776 HSP 1 e-value: 0.0 bit: 1538.0 Len: 776 Query Start:1 Query End:776 Subject Strand: POSITIVE Subject Start: 1 Subject End: 776 agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat agaagtctccttactttatttataaaccatattataataaaaattttctgacaattcatacactcctaacaaatgtaacaaaaacgtaataatgacgaacgttatagtcaagaaaagctatataatgaagtttcaagtctctatttatttgaaatacagaacaaatacagtttaacatccggaaataagaaaaaaccaatcagaactagcgcagaatgcaccagtttgattggtttgtggtaggatgtttattaaatattatttctcaaactcatccaaaaacttctccagttcttcctgagcttcagacgttgtgcctctgagcaggcccagcatgtttacaagttcagctgttttgctggcaatctcactatcggtacaattgatattggcgacaatctctgttagcgaagtacatacgccgagctccagagagcctgatctcccctaggacgtttgagttgtttcttgtgtcataaatttctttctagttattgggtttgagaaacagcagagcggttatcaatagccgataacttctttttcaactgctgctatgatttcttggggaatgtctgagatagccaaacgataaacgatattctacctgtgtacagaaattaattaagtcccaataacggattccaaacccacataatcaacttgatatagtaaaacaaatttagggttgaattcagctatttcatttcattaggattgtttccagcttttgttaacttttttaacctaatcactggtatgctagatttttgaat Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAAGUCUCCUUACUUUAUUUAUAAACCAUAUUAUAAUAAAAAUUUUCUGACAAUUCAUACACUCCUAACAAAUGUAACAAAAACGUAAUAAUGACGAACGUUAUAGUCAAGAAAAGCUAUAUAAUGAAGUUUCAAGUCUCUAUUUAUUUGAAAUACAGAACAAAUACAGUUUAACAUCCGGAAAUAAGAAAAAACCAAUCAGAACUAGCGCAGAAUGCACCAGUUUGAUUGGUUUGUGGUAGGAUGUUUAUUAAAUAUUAUUUCUCAAACUCAUCCAAAAACUUCUCCAGUUCUUCCUGAGCUUCAGACGUUGUGCCUCUGAGCAGGCCCAGCAUGUUUACAAGUUCAGCUGUUUUGCUGGCAAUCUCACUAUCGGUACAAUUGAUAUUGGCGACAAUCUCUGUUAGCGAAGUACAUACGCCGAGCUCCAGAGAGCCUGAUCUCCCCUAGGACGUUUGAGUUGUUUCUUGUGUCAUAAAUUUCUUUCUAGUUAUUGGGUUUGAGAAACAGCAGAGCGGUUAUCAAUAGCCGAUAACUUCUUUUUCAACUGCUGCUAUGAUUUCUUGGGGAAUGUCUGAGAUAGCCAAACGAUAAACGAUAUUCUACCUGUGUACAGAAAUUAAUUAAGUCCCAAUAACGGAUUCCAAACCCACAUAAUCAACUUGAUAUAGUAAAACAAAUUUAGGGUUGAAUUCAGCUAUUUCAUUUCAUUAGGAUUGUUUCCAGCUUUUGUUAACUUUUUUAACCUAAUCACUGGUAUGCUAGAUUUUUGAAU ((((((((....(((.(((((........(((((((.......(((((((((....................((((.......))))....(((((....))))).))).))))))....)))))))..(((((((((........))))))))).......))))).)))....(((((((...((((...((((((((((((.((.(.((.....)).).))))))))))))))((((.((((.((((((...(((..((..(((((((...(((...(((.(((..(((((.....)))))..))).)))..((((((((((.(((.((((.((..........)))))).((((((((((.......(((((((...)))))))(((....)))....))))))))))........)))..))).))))).)).............))).)))))))..))....)))...)))))).))))(((.((((((((((((((....((((((((.(((((((.......))))))).)).......))))))...((((((((.((((((((((.....................)))))))).)).......)))))))).))))).))))))))))))........))))........)))).........((((((.....(((((....)))))..............(((.....)))....))))))...................)))).)))..)))))))).... (-169.51) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUCAAAAAUCUAGCAUACCAGUGAUUAGGUUAAAAAAGUUAACAAAAGCUGGAAACAAUCCUAAUGAAAUGAAAUAGCUGAAUUCAACCCUAAAUUUGUUUUACUAUAUCAAGUUGAUUAUGUGGGUUUGGAAUCCGUUAUUGGGACUUAAUUAAUUUCUGUACACAGGUAGAAUAUCGUUUAUCGUUUGGCUAUCUCAGACAUUCCCCAAGAAAUCAUAGCAGCAGUUGAAAAAGAAGUUAUCGGCUAUUGAUAACCGCUCUGCUGUUUCUCAAACCCAAUAACUAGAAAGAAAUUUAUGACACAAGAAACAACUCAAACGUCCUAGGGGAGAUCAGGCUCUCUGGAGCUCGGCGUAUGUACUUCGCUAACAGAGAUUGUCGCCAAUAUCAAUUGUACCGAUAGUGAGAUUGCCAGCAAAACAGCUGAACUUGUAAACAUGCUGGGCCUGCUCAGAGGCACAACGUCUGAAGCUCAGGAAGAACUGGAGAAGUUUUUGGAUGAGUUUGAGAAAUAAUAUUUAAUAAACAUCCUACCACAAACCAAUCAAACUGGUGCAUUCUGCGCUAGUUCUGAUUGGUUUUUUCUUAUUUCCGGAUGUUAAACUGUAUUUGUUCUGUAUUUCAAAUAAAUAGAGACUUGAAACUUCAUUAUAUAGCUUUUCUUGACUAUAACGUUCGUCAUUAUUACGUUUUUGUUACAUUUGUUAGGAGUGUAUGAAUUGUCAGAAAAUUUUUAUUAUAAUAUGGUUUAUAAAUAAAGUAAGGAGACUUCU .........(((..((..(((((......(((((.....)))))....)))))..(((.((((((..((..((((.(((((........(.(((((((.((((.....(((.....)))....(((((((((((.......(((((............((((....))))................((((((.....))))))....))))).........(((((((.......((..(((((((.....)))))))..)))))))))))).)))))))).......)))).))))))).)...((((..........(((((((...((((......((.((((((.(((((((((...(((.((((((.(.(.(((((..........)))))...).).))))))......((((......)))).....)))...)))))))))...).)))))))......(((.(((((((..(((((((.....)))))))...))))))).)))..................)))).....(((((((((((((((((((.....))))))))).))))))))))............)))))))...((.((((((((.((.....)))))))))).)).)))).............))))))))).((((...(((((...........)))))...))))..))..)))))).)))......))..))).........((((((......))))))....((.(((....))))) (-192.41) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 772 110 61 201 152 NC_009009:SSA_1882|5end_Subtilisin-like_serine_proteases,_putative_1880797..1881027_NEGATIVE 467 327 282 172 124 NC_009009:SSA_1700|5end_hypothetical_protein_1691288..1691518_NEGATIVE 391 320 273 72 22 NC_009009:SSA_2141|5end_Argininosuccinate_lyase,_putative_2142201..2142431_NEGATIVE 384 347 301 78 18 NC_009009:SSA_1897|5end_Ribosomal_protein_HS6-type_(S12/L30/L7a),_putative_1894450..1894680_NEGATIVE 374 335 296 172 127 NC_009009:SSA_0088|5end_V-type_sodium_ATPase,_subunit_C,_putative_88930..89160_POSITIVE 369 359 315 60 6 NC_009009:SSA_2252|5end_hypothetical_protein_2248649..2248879_NEGATIVE 369 357 311 218 169 NC_009009:SSA_1600|5end_hypothetical_protein_1606595..1606825_NEGATIVE 368 448 401 158 106 NC_009009:SSA_1650|5end_3-Ketoacyl-ACP_reductase,_putative_1649594..1649824_NEGATIVE 366 469 421 62 4 NC_009009:SSA_2106|5end_Flavin_monoxygenase,_putative_2109064..2109294_NEGATIVE 356 470 421 69 20 NC_009009:SSA_0481|5end_Cobyric_acid_synthase,_putative_481962..482192_POSITIVE 353 246 201 186 135 NC_009009:SSA_1706|5end_Exodeoxyribonuclease,_putative_1696802..1697032_POSITIVE 353 360 315 139 75 NC_009009:SSA_0939|5end_Inositol_monophosphatase_(Mg++_dependent),_putative_946810..947040_POSITIVE 351 330 282 144 98 NC_009009:SSA_2042|5end_hypothetical_protein_2047073..2047303_NEGATIVE 351 349 302 56 13 NC_009009:SSA_0636|5end_N-(5'-phosphoribosyl)anthranilate_isomerase,_putative_625184..625414_POSITIVE 347 440 395 68 21 NC_009009:SSA_0374|5end_Peptide_methionine_sulfoxide_reductase_msrA/msrB,_putative_363163..363393_POSITIVE 345 555 511 231 191 NC_009009:SSA_0189|5end_Competence_protein_ComGF,_putative_191015..191245_POSITIVE 340 329 284 149 97 NC_009009:SSA_2014|5end_D-alanyl-D-alanine_carboxypeptidase,_putative_2014807..2015037_NEGATIVE 339 438 401 50 10 NC_009009:SSA_1454|5end_hypothetical_protein_1461100..1461330_NEGATIVE 339 449 407 143 110 NC_009009:SSA_0269|5end_Phosphotransferase_system_(PTS)_cellobiose-specific_component_IIA,_putative_262550..262780_POSITIVE 337 337 291 165 119 NC_009009:SSA_0964|5end_DEAD_RNA_helicase,_putative_974114..974344_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 419 576 533 142 93 NC_009009:SSA_2260|3end_DNA_mismatch_repair_protein_hexA,_putative_2255601..2255751_NEGATIVE 404 312 282 144 113 NC_009009:SSA_1701|3end_Transcriptional_repressor_of_sugar_metabolism,_GlpR/DeoR_family,_putative_1691299..1691449_NEGATIVE 391 320 273 57 7 NC_009009:SSA_2142|3end_Argininosuccinate_synthase,_putative_2142216..2142366_NEGATIVE 384 347 301 85 25 NC_009009:SSA_1899|3end_hypothetical_protein_1894443..1894593_NEGATIVE 356 470 421 84 35 NC_009009:SSA_0480|3end_Cobalt_ABC_transporter,_ATP-binding_protein,_putative_482057..482207_POSITIVE 351 330 282 151 105 NC_009009:SSA_2044|3end_Cysteinyl-tRNA_synthetase,_putative_2047066..2047216_NEGATIVE 347 470 421 104 43 NC_009009:SSA_1651|3end_hypothetical_protein_1649587..1649737_NEGATIVE 339 449 407 134 101 NC_009009:SSA_0268|3end_Phosphotransferase_system_(PTS)_cellobiose-specific_component_IIB,_putative_262621..262771_POSITIVE 332 360 314 78 25 NC_009009:SSA_0567|3end_Isochorismitase_family_protein,_putative_561442..561592_POSITIVE 332 461 422 57 16 NC_009009:SSA_0407|3end_ABC-type_multidrug_transport_system_(3-component_subtilin_immunity_exporter),_ATPase_component,_putative_402911..403061_NEGATIVE 331 340 292 68 11 NC_009009:SSA_1973|3end_Histidine_kinase,_putative_1968407..1968557_NEGATIVE 329 349 301 56 8 NC_009009:SSA_0469|3end_Precorrin-6B_methylase_2,putative_472959..473109_POSITIVE 328 579 533 135 93 NC_009009:SSA_0756|3end_Alanyl-tRNA_synthetase,_putative_739434..739584_POSITIVE 326 443 402 141 98 NC_009009:SSA_0999|3end_Biotin--[acetyl-CoA-carboxylase]_ligase,_putative_998781..998931_NEGATIVE 325 474 431 115 61 NC_009009:SSA_2156|3end_Conserved_uncharacterized_protein_2156216..2156366_NEGATIVE 325 438 391 85 27 NC_009009:SSA_1794|3end_Two-component_response_transcriptional_regulator_(CheY-like_receiver_and_winged-helix_DNA-binding_domains),_putative_1776345..1776495_NEGATIVE 324 329 283 150 112 NC_009009:SSA_2261|3end_Transcriptional_repressor_(arginine_synthesis),_putative_2258229..2258379_NEGATIVE 323 340 297 55 6 NC_009009:SSA_0836|3end_SecA-like_protein,_putative_823969..824119_POSITIVE 323 334 294 140 102 NC_009009:SSA_0576|3end_Conserved_GTPase,_putative_571225..571375_POSITIVE 318 449 407 148 94 NC_009009:SSA_1124|3end_Oxidoreductase,_putative_1148547..1148697_NEGATIVE