Origin IGS: gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gcatgtagaaaagtcaccgaacggtggctttttcagtaaccaataacttctacaatgctttatcgtattatttgtaagttttcttgccaagtggtaaaataaagccgaaataaaatatgttctcctagagcaatctaatcgattaggaacaattaatttgactgttcttcgtagtcatataaaggagttgattttatgactaatactaggcgagcagtggtagcgctgagcttgggtgttttgttattgctagcggtgggaattctactgcaggttcatttttggagaatgatcattttgctaggtttattcttttttgcggaagcatttatcatctggtactcgggaagcaagtctaagtcgcagatcaatggcaggcaaagccttgaattcttctggctttatatcaaacgcttgaaaatcttttatgtcacaattgtgtgtctcgcaattcctttcgtttctctgtcttccaatcctgctttcgatttgttttttgtgcttgagttgttagtattcttgctcttaagcaattatatctttagctctcagggcattcaaccgcccaagaaagagagggctcttagagtataatagctttgtttgcagcagtcaatttgattgctgttttttcaaaaaaagcctggatttttccaggctttttagtgaaatgtgcaggc Mask Tandem Repeat Region ================================================ gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Find is-nt database================================================ Query_seq: SSA_1434:SSA_1435|SSA_1434:SSA_1435:Conserved uncharacterized Firmicutes protein:hypothetical protein:-><-:1441161..1441840 680 gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1434:SSA_1435|SSA_1434:SSA_1435:Conserved uncharacterized Firmicutes protein:hypothetical protein:-><-:1441161..1441840 680 gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1434:SSA_1435|SSA_1434:SSA_1435:Conserved uncharacterized Firmicutes protein:hypothetical protein:-><-:1441161..1441840 680 gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 148 End: 252 ................................................................................................................................................... M L K S K N T N N S S T K N K S K A G L E D R E T K G I A R H T I V T ............................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 192 End: 371 ............................................................................................................................................................................................... M E S R I G R Q R N E R N C E T H N C D I K D F Q A F D I K P E E F K A L P A I D L R L R L A S R V P D D K C F R K K E ..................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 304 End: 402 ............................................................................................................................................................................................................................................................................................................... M P L I C D L D L L P E Y Q M I N A S A K K N K P S K M I I L Q K ...................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 418 End: 525 ................................................................................................................................................................................................................................................................................................................................................................................................................................. M P T A S N N K T P K L S A T T A R L V L V I K S T P L Y D Y E E Q S N ........................................................................................................................................................... Protein_Len: 51 Strand: + Start: 528 End: 680 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V P N R L D C S R R T Y F I S A L F Y H L A R K L T N N T I K H C R S Y W L L K K P P F G D F S T C Protein_Len: 37 Strand: - Start: 325 End: 435 .................................................................................................................................................................................................................................................................................................................................... V Q K G L V L H Y I S G C F L I F R A F H D N E L F S G A T S N G G S A M ..................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 266 End: 364 ......................................................................................................................................................................................................................................................................... A N S I F G S S N L A K G A M S R R S L S A E R T G S S L H K R M ............................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: - Start: 178 End: 291 ................................................................................................................................................................................. A C F V F R F C S Q F V S F R F S N R S V C N H C L L N E L T Q Y L A L L M ..................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 90 End: 485 ......................................................................................... G N I Q S K S K S G S Y W I I F A E A F F F L G L L I I M R W F H V Q L L I G V A L L L L V G L S L A V V A R R T N T M ................................................................................................................................................................................................... Protein_Len: 49 Strand: - Start: 2 End: 148 . R C M E S F L R S F D L S K K F F C C D F Q S S C V F S N Y E L L G R K R P R N F A R L A L S I M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 1 End: 90 G A C K V L F G P F I W A K K S F V A I L N V A A F L A I M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 119 End: 148 ......................................................................................................................GTTGAATGCCCTGAGAGCTAAAGATATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 581 End: 610 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGTTTTCTTGCCAAGTGGTAAAAT...................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 64 End: 93 ...............................................................ATTGACTGCTGCAAACAAAGCTATTATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 91 HP_score: -11.3 Tail_Score: -4.74132 Start: 22 End: 39 Full_Region: gttttttcaaaaaaa gcctgga tttt tccaggc tttttagtgaaatgt .....................gcctggatttttccaggc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -10.5 Tail_Score: -5.00616 Start: 54 End: 74 Full_Region: taatagctttgtttg cagcagtca att tgattgctg ttttttcaaaaaaag .....................................................cagcagtcaatttgattgctg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SSA_1434:SSA_1435|SSA_1434:SSA_1435:Conserved uncharacterized Firmicutes protein:hypothetical protein:-><-:1441161..1441840 680 gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Intra-Species Hit: Count: 1 Min: 1 Max: 680 Len: 680 Subject: NC_009009_SSA_1434_SSA_1435|Conserved uncharacterized Firmicutes protein:hypothetical protein|POSITIVE:NEGATIVE|[1441161,1441840]|680 HSP 1 e-value: 0.0 bit: 1306.0 Len: 680 Query Start:1 Query End:680 Subject Strand: POSITIVE Subject Start: 1 Subject End: 680 gcctgcacatttcactaaaaagcctggaaaaatccaggcnnnnnnngaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc gcctgcacatttcactaaaaagcctggaaaaatccaggctttttttgaaaaaacagcaatcaaattgactgctgcaaacaaagctattatactctaagagccctctctttcttgggcggttgaatgccctgagagctaaagatataattgcttaagagcaagaatactaacaactcaagcacaaaaaacaaatcgaaagcaggattggaagacagagaaacgaaaggaattgcgagacacacaattgtgacataaaagattttcaagcgtttgatataaagccagaagaattcaaggctttgcctgccattgatctgcgacttagacttgcttcccgagtaccagatgataaatgcttccgcaaaaaagaataaacctagcaaaatgatcattctccaaaaatgaacctgcagtagaattcccaccgctagcaataacaaaacacccaagctcagcgctaccactgctcgcctagtattagtcataaaatcaactcctttatatgactacgaagaacagtcaaattaattgttcctaatcgattagattgctctaggagaacatattttatttcggctttattttaccacttggcaagaaaacttacaaataatacgataaagcattgtagaagttattggttactgaaaaagccaccgttcggtgacttttctacatgc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCUGCACAUUUCACUAAAAAGCCUGGAAAAAUCCAGGCUUUUUUUGAAAAAACAGCAAUCAAAUUGACUGCUGCAAACAAAGCUAUUAUACUCUAAGAGCCCUCUCUUUCUUGGGCGGUUGAAUGCCCUGAGAGCUAAAGAUAUAAUUGCUUAAGAGCAAGAAUACUAACAACUCAAGCACAAAAAACAAAUCGAAAGCAGGAUUGGAAGACAGAGAAACGAAAGGAAUUGCGAGACACACAAUUGUGACAUAAAAGAUUUUCAAGCGUUUGAUAUAAAGCCAGAAGAAUUCAAGGCUUUGCCUGCCAUUGAUCUGCGACUUAGACUUGCUUCCCGAGUACCAGAUGAUAAAUGCUUCCGCAAAAAAGAAUAAACCUAGCAAAAUGAUCAUUCUCCAAAAAUGAACCUGCAGUAGAAUUCCCACCGCUAGCAAUAACAAAACACCCAAGCUCAGCGCUACCACUGCUCGCCUAGUAUUAGUCAUAAAAUCAACUCCUUUAUAUGACUACGAAGAACAGUCAAAUUAAUUGUUCCUAAUCGAUUAGAUUGCUCUAGGAGAACAUAUUUUAUUUCGGCUUUAUUUUACCACUUGGCAAGAAAACUUACAAAUAAUACGAUAAAGCAUUGUAGAAGUUAUUGGUUACUGAAAAAGCCACCGUUCGGUGACUUUUCUACAUGC .((((....(((((..((((((((((((....)))))))))))).)))))....(((((((.((((((.(((((......((((.((((((.(((...(((..((((......(((((......))))).)))))))..))))))))).))))..(((((......................................(((((.(((.......(((((.(....)...(((((...((((....))))...............(((((((((.(((.((((((((.....(((((((.......))).)))))))).).)))..(((((.....))))).....))).))))))))).)))))...........................)))))......))).))))).((((.........(((((((.................))).))))))))...)))))...))))).((((((((.((.........)).))))))))....(((((((.......)))))))....)))))).))))))).))))..................((((((((.((....(((..(((....))).)))....)).))))))))..((((((((.....((((((((((...(....).))))))))))))))))))... (-158.65) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCAUGUAGAAAAGUCACCGAACGGUGGCUUUUUCAGUAACCAAUAACUUCUACAAUGCUUUAUCGUAUUAUUUGUAAGUUUUCUUGCCAAGUGGUAAAAUAAAGCCGAAAUAAAAUAUGUUCUCCUAGAGCAAUCUAAUCGAUUAGGAACAAUUAAUUUGACUGUUCUUCGUAGUCAUAUAAAGGAGUUGAUUUUAUGACUAAUACUAGGCGAGCAGUGGUAGCGCUGAGCUUGGGUGUUUUGUUAUUGCUAGCGGUGGGAAUUCUACUGCAGGUUCAUUUUUGGAGAAUGAUCAUUUUGCUAGGUUUAUUCUUUUUUGCGGAAGCAUUUAUCAUCUGGUACUCGGGAAGCAAGUCUAAGUCGCAGAUCAAUGGCAGGCAAAGCCUUGAAUUCUUCUGGCUUUAUAUCAAACGCUUGAAAAUCUUUUAUGUCACAAUUGUGUGUCUCGCAAUUCCUUUCGUUUCUCUGUCUUCCAAUCCUGCUUUCGAUUUGUUUUUUGUGCUUGAGUUGUUAGUAUUCUUGCUCUUAAGCAAUUAUAUCUUUAGCUCUCAGGGCAUUCAACCGCCCAAGAAAGAGAGGGCUCUUAGAGUAUAAUAGCUUUGUUUGCAGCAGUCAAUUUGAUUGCUGUUUUUUCAAAAAAAGCCUGGAUUUUUCCAGGCUUUUUAGUGAAAUGUGCAGGC .......(((((((((((....))))))))))).....((.((((((((.(((((.(((((((..(((((((((((((....)))).)))))))))..))))))).(((((((....(((((.....))))).....(((((.(((((..........(((..(((((((.((((((((.(((........)))))))))))...((((((...(((((....))))).)))))).............(((.(((((((.....))))))).)))........)))))))..)))...((((((((...........(((....)))......))))))))....(((((............(((((..(((((.(((.((((((..((.....)).))))))...((((....))))................(((((((.....)))))))))).)))))..))))))))))..)))))...)))))))))))))))))...)))))))).))...(((((.(..((((.(((((((((..(((((((.((((........))))........)))))))...))).)))))).)))).....(((((((((.....)))))))))..(((((.((((((((((((....))))))))))))..))))).).))))). (-199.33) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 376 465 427 43 6 NC_009009:SSA_2023|5end_Fructan_beta-fructosidase_precursor,_putative_2028826..2029056_NEGATIVE 369 460 411 73 23 NC_009009:SSA_0069|5end_Hypothetical_protein,_possibly_membrane-associated_73037..73267_POSITIVE 352 469 430 193 160 NC_009009:SSA_0334|5end_Diphosphomevalonate_decarboxylase,_putative_327855..328085_POSITIVE 351 137 92 226 183 NC_009009:SSA_0841|5end_hypothetical_protein_826935..827165_POSITIVE 343 338 291 217 164 NC_009009:SSA_2122|5end_hypothetical_protein_2127607..2127837_NEGATIVE 338 334 294 195 148 NC_009009:SSA_1897|5end_Ribosomal_protein_HS6-type_(S12/L30/L7a),_putative_1894450..1894680_NEGATIVE 337 350 306 77 27 NC_009009:SSA_0086|5end_V-type_sodium_ATPase,_subunit_K,_putative_87839..88069_POSITIVE 335 432 395 43 5 NC_009009:SSA_1866|5end_hypothetical_protein_1862182..1862412_NEGATIVE 335 349 302 138 94 NC_009009:SSA_0051|5end_Dihydroxyacetone_kinase_phosphotransfer_protein,_putative_55190..55420_POSITIVE 332 330 282 39 1 NC_009009:SSA_2237|5end_Dihydrofolate:folylpolyglutamate_synthetase,_putative_2236740..2236970_NEGATIVE 330 349 301 47 2 NC_009009:SSA_0997|5end_DNA-directed_DNA_polymerase_III_chain,_putative_996779..997009_POSITIVE 324 486 445 225 186 NC_009009:SSA_0336|5end_Isopentenyl-diphosphate_delta-isomerase,_putative_329792..330022_POSITIVE 323 317 275 191 152 NC_009009:SSA_1973|5end_Histidine_kinase,_putative_1969507..1969737_NEGATIVE 323 80 36 225 173 NC_009009:SSA_1468|5end_3-dehydroquinate_synthase,_putative_1475452..1475682_NEGATIVE 323 335 296 89 36 NC_009009:SSA_1449|5end_Histidinol-phosphate/aromatic_aminotransferase_and_cobyric_acid_decarboxylase,_putative_1451931..1452161_NEGATIVE 321 670 623 210 156 NC_009009:SSA_1640|5end_hypothetical_protein_1642530..1642760_NEGATIVE 321 127 83 166 125 NC_009009:SSA_1307|5end_Trk_transporter_membrane-spanning_protein-K+_transport,_putative_1326270..1326500_NEGATIVE 318 142 104 43 1 NC_009009:SSA_1466|5end_Prephenate_dehydrogenase,_putative_1473111..1473341_NEGATIVE 318 469 427 65 24 NC_009009:SSA_1298|5end_Maltose/maltodextrin_ABC_transporter,_sugar-binding_protein_MalX,_putative_1315291..1315521_POSITIVE 318 138 92 48 12 NC_009009:SSA_0746|5end_Glucosamine-6-phosphate_deaminase,_putative_727078..727308_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 372 50 3 81 35 NC_009009:SSA_1434|3end_Conserved_uncharacterized_Firmicutes_protein_1441100..1441250_POSITIVE 335 349 302 138 94 NC_009009:SSA_0050|3end_Dihydroxyacetone_kinase,_phosphatase_domain_(Dak2),_putative_55270..55420_POSITIVE 330 349 301 47 2 NC_009009:SSA_0996|3end_cGMP-specific_phosphodiesterase,_putative_996859..997009_POSITIVE 314 138 91 146 99 NC_009009:SSA_2052|3end_Thioredoxin,_putative_2057193..2057343_NEGATIVE 307 136 100 133 96 NC_009009:SSA_1049|3end_ABC_transporter_membrane-spanning_permease-spermidine/putrescine_transport,_putative_1064971..1065121_POSITIVE 306 337 296 67 25 NC_009009:SSA_1909|3end_Transcriptional_attenuator_LytR,_putative_1900904..1901054_NEGATIVE 302 344 304 151 117 NC_009009:SSA_1184|3end_DNA_topoisomerase_I,_putative_1211512..1211662_NEGATIVE 300 345 304 52 14 NC_009009:SSA_1593|3end_Dipeptidase,_putative_1596390..1596540_NEGATIVE 299 306 261 151 109 NC_009009:SSA_1112|3end_Cell_wall_surface_anchor_family_protein,_putative_1139738..1139888_POSITIVE 299 329 284 87 45 NC_009009:SSA_0849|3end_Signal_peptidase_I,_putative_836764..836914_POSITIVE 299 137 95 137 97 NC_009009:SSA_0621|3end_SOS_responce_UmuC_protein,_putative_612322..612472_NEGATIVE 297 141 101 65 16 NC_009009:SSA_1148|3end_Beta-glucosides_PTS,_EIIC,_putative_1178473..1178623_POSITIVE 297 141 105 136 97 NC_009009:SSA_0956|3end_surface_protein_D_965418..965568_POSITIVE 296 476 431 47 1 NC_009009:SSA_0676|3end_Farnesyl_diphosphate_synthase,_putative_659553..659703_POSITIVE 292 333 291 145 106 NC_009009:SSA_2388|3end_hypothetical_protein_2031667..2031817_NEGATIVE 291 128 100 151 119 NC_009009:SSA_0333|3end_Mevalonate_kinase,_putative_327953..328103_POSITIVE 289 470 422 59 1 NC_009009:SSA_0494|3end_ABC-type_dipeptide/oligopeptide/nickel_transport_system,_ATPase_component,_putative_495269..495419_POSITIVE 286 137 100 40 7 NC_009009:SSA_0838|3end_GtfB,_putative_826829..826979_POSITIVE 286 483 445 54 6 NC_009009:SSA_0836|3end_SecA-like_protein,_putative_823969..824119_POSITIVE 285 357 316 138 94 NC_009009:SSA_1370|3end_CAAX_amino_terminal_protease_family,_putative_1386033..1386183_NEGATIVE