Origin IGS: atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttcttccctcgccatcgaatcaccaactctgacgtcaggtgggtcaggataatcgtcagaaggaaggcccaacggccattttcccacttggtcagctgctgggatttgagcagaaagaaagataactcaataaagataggatggaggaagaaataaaggatacttagatcttttaaatgtcgccagtttttttcacgcttccactgagtttttaacagccaattgaataagaagagtgtaaagggaatgagagcaaagaaaaaatttttatccagtccctgcctcatgtaaaccagcactccttcgcctactaggaaaagacttgccaacagaagagacagccagcgtttcttctgaaataaggctatctgcccgtaatcagctagaaagtagcctaaatagataaaaatgggcgtatagaagaggccattcctgctagtgaaaaagagcttggcatagacatcgtaccagtccgtcagcagactaggcgacaggtaggcgtgatatgtctcaatagcacctaaggtgtagagaattaacaaaagggcaaatgttttcttgggacccaacttcctatacaaaaaatggaccagcagcaagcctaagagaaaggcggggatataccaagagctggtaactcattccgatgtagaagagcgctgctagaatagccagcggagctaggtagagaggccagtgcagagattggaagtaagtcaaagcatagggaagatagaccaaactccaaaagccataggcctttaaaatacctttgatatacagagtcagtttcacgtcttgaggctcttgcttccagcgtactcggaaaaaataggctgaagaaattaaaaagaaaggaaccgccatgcgaccaaacatactcttttgaacaaaatgcagggcttcatgttcaaaaagcctctgacagtgaaccagaattaccaaaacggaagcgatatattgaaaaaggctgagcagggcagaattgactggctgctttggctctatgacttctctcttttgcatcaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtcaagggaaaaaagtgatcatttacatcttaaacaacccccgtaaggagaaagcttgatgcaaaagagagaagtcatagagccaaagcagccagtcaattctgccctgctcagcctttttcaatatatcgcttccgttttggtaattctggttcactgtcagaggctttttgaacatgaagccctgcattttgttcaaaagagtatgtttggtcgcatggcggttcctttctttttaatttcttcagcctattttttccgagtacgctggaagcaagagcctcaagacgtgaaactgactctgtatatcaaaggtattttaaaggcctatggcttttggagtttggtctatcttccctatgctttgacttacttccaatctctgcactggcctctctacctagctccgctggctattctagcagcgctcttctacatcggaatgagttaccagctcttggtatatccccgcctttctcttaggcttgctgctggtccattttttgtataggaagttgggtcccaagaaaacatttgcccttttgttaattctctacaccttaggtgctattgagacatatcacgcctacctgtcgcctagtctgctgacggactggtacgatgtctatgccaagctctttttcactagcaggaatggcctcttctatacgcccatttttatctatttaggctactttctagctgattacgggcagatagccttatttcagaagaaacgctggctgtctcttctgttggcaagtcttttcctagtaggcgaaggagtgctggtttacatgaggcagggactggataaaaattttttctttgctctcattccctttacactcttcttattcaattggctgttaaaaactcagtggaagcgtgaaaaaaactggcgacatttaaaagatctaagtatcctttatttcttcctccatcctatctttattgagttatctttctttctgctcaaatcccagcagctgaccaagtgggaaaatggccgttgggccttccttctgacgattatcctgacccacctgacgtcagagttggtgattcgatggcgagggaagaaaatcatatagagcgttaagagcaactatcaattttgaatagaattaactataaaacatttcaaaggagttccat Mask Tandem Repeat Region ================================================ atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttcttccctcgccatcgaatcaccaactctgacgtcaggtgggtcaggataatcgtcagaaggaaggcccaacggccattttcccacttggtcagctgctgggatttgagcagaaagaaagataactcaataaagataggatggaggaagaaataaaggatacttagatcttttaaatgtcgccagtttttttcacgcttccactgagtttttaacagccaattgaataagaagagtgtaaagggaatgagagcaaagaaaaaatttttatccagtccctgcctcatgtaaaccagcactccttcgcctactaggaaaagacttgccaacagaagagacagccagcgtttcttctgaaataaggctatctgcccgtaatcagctagaaagtagcctaaatagataaaaatgggcgtatagaagaggccattcctgctagtgaaaaagagcttggcatagacatcgtaccagtccgtcagcagactaggcgacaggtaggcgtgatatgtctcaatagcacctaaggtgtagagaattaacaaaagggcaaatgttttcttgggacccaacttcctatacaaaaaatggaccagcagcaagcctaagagaaaggcggggatataccaagagctggtaactcattccgatgtagaagagcgctgctagaatagccagcggagctaggtagagaggccagtgcagagattggaagtaagtcaaagcatagggaagatagaccaaactccaaaagccataggcctttaaaatacctttgatatacagagtcagtttcacgtcttgaggctcttgcttccagcgtactcggaaaaaataggctgaagaaattaaaaagaaaggaaccgccatgcgaccaaacatactcttttgaacaaaatgcagggcttcatgttcaaaaagcctctgacagtgaaccagaattaccaaaacggaagcgatatattgaaaaaggctgagcagggcagaattgactggctgctttggctctatgacttctctcttttgcatcaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Find is-nt database================================================ Query_seq: SSA_1424:SSA_1428|SSA_1424:SSA_1428:Hydrolase, putative:hypothetical protein:<-<-:1434570..1435727 1158 atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttcttccctcgccatcgaatcaccaactctgacgtcaggtgggtcaggataatcgtcagaaggaaggcccaacggccattttcccacttggtcagctgctgggatttgagcagaaagaaagataactcaataaagataggatggaggaagaaataaaggatacttagatcttttaaatgtcgccagtttttttcacgcttccactgagtttttaacagccaattgaataagaagagtgtaaagggaatgagagcaaagaaaaaatttttatccagtccctgcctcatgtaaaccagcactccttcgcctactaggaaaagacttgccaacagaagagacagccagcgtttcttctgaaataaggctatctgcccgtaatcagctagaaagtagcctaaatagataaaaatgggcgtatagaagaggccattcctgctagtgaaaaagagcttggcatagacatcgtaccagtccgtcagcagactaggcgacaggtaggcgtgatatgtctcaatagcacctaaggtgtagagaattaacaaaagggcaaatgttttcttgggacccaacttcctatacaaaaaatggaccagcagcaagcctaagagaaaggcggggatataccaagagctggtaactcattccgatgtagaagagcgctgctagaatagccagcggagctaggtagagaggccagtgcagagattggaagtaagtcaaagcatagggaagatagaccaaactccaaaagccataggcctttaaaatacctttgatatacagagtcagtttcacgtcttgaggctcttgcttccagcgtactcggaaaaaataggctgaagaaattaaaaagaaaggaaccgccatgcgaccaaacatactcttttgaacaaaatgcagggcttcatgttcaaaaagcctctgacagtgaaccagaattaccaaaacggaagcgatatattgaaaaaggctgagcagggcagaattgactggctgctttggctctatgacttctctcttttgcatcaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1424:SSA_1428|SSA_1424:SSA_1428:Hydrolase, putative:hypothetical protein:<-<-:1434570..1435727 1158 atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttcttccctcgccatcgaatcaccaactctgacgtcaggtgggtcaggataatcgtcagaaggaaggcccaacggccattttcccacttggtcagctgctgggatttgagcagaaagaaagataactcaataaagataggatggaggaagaaataaaggatacttagatcttttaaatgtcgccagtttttttcacgcttccactgagtttttaacagccaattgaataagaagagtgtaaagggaatgagagcaaagaaaaaatttttatccagtccctgcctcatgtaaaccagcactccttcgcctactaggaaaagacttgccaacagaagagacagccagcgtttcttctgaaataaggctatctgcccgtaatcagctagaaagtagcctaaatagataaaaatgggcgtatagaagaggccattcctgctagtgaaaaagagcttggcatagacatcgtaccagtccgtcagcagactaggcgacaggtaggcgtgatatgtctcaatagcacctaaggtgtagagaattaacaaaagggcaaatgttttcttgggacccaacttcctatacaaaaaatggaccagcagcaagcctaagagaaaggcggggatataccaagagctggtaactcattccgatgtagaagagcgctgctagaatagccagcggagctaggtagagaggccagtgcagagattggaagtaagtcaaagcatagggaagatagaccaaactccaaaagccataggcctttaaaatacctttgatatacagagtcagtttcacgtcttgaggctcttgcttccagcgtactcggaaaaaataggctgaagaaattaaaaagaaaggaaccgccatgcgaccaaacatactcttttgaacaaaatgcagggcttcatgttcaaaaagcctctgacagtgaaccagaattaccaaaacggaagcgatatattgaaaaaggctgagcagggcagaattgactggctgctttggctctatgacttctctcttttgcatcaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1424:SSA_1428|SSA_1424:SSA_1428:Hydrolase, putative:hypothetical protein:<-<-:1434570..1435727 1158 atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttcttccctcgccatcgaatcaccaactctgacgtcaggtgggtcaggataatcgtcagaaggaaggcccaacggccattttcccacttggtcagctgctgggatttgagcagaaagaaagataactcaataaagataggatggaggaagaaataaaggatacttagatcttttaaatgtcgccagtttttttcacgcttccactgagtttttaacagccaattgaataagaagagtgtaaagggaatgagagcaaagaaaaaatttttatccagtccctgcctcatgtaaaccagcactccttcgcctactaggaaaagacttgccaacagaagagacagccagcgtttcttctgaaataaggctatctgcccgtaatcagctagaaagtagcctaaatagataaaaatgggcgtatagaagaggccattcctgctagtgaaaaagagcttggcatagacatcgtaccagtccgtcagcagactaggcgacaggtaggcgtgatatgtctcaatagcacctaaggtgtagagaattaacaaaagggcaaatgttttcttgggacccaacttcctatacaaaaaatggaccagcagcaagcctaagagaaaggcggggatataccaagagctggtaactcattccgatgtagaagagcgctgctagaatagccagcggagctaggtagagaggccagtgcagagattggaagtaagtcaaagcatagggaagatagaccaaactccaaaagccataggcctttaaaatacctttgatatacagagtcagtttcacgtcttgaggctcttgcttccagcgtactcggaaaaaataggctgaagaaattaaaaagaaaggaaccgccatgcgaccaaacatactcttttgaacaaaatgcagggcttcatgttcaaaaagcctctgacagtgaaccagaattaccaaaacggaagcgatatattgaaaaaggctgagcagggcagaattgactggctgctttggctctatgacttctctcttttgcatcaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 10 Min: 77 Max: 1100 Len: 1024 Subject: UniRef90_Q8DXA0 Cluster: Membrane protein, putative; n=8; Streptococcus agalactiae|Rep: Membrane protein, putative - Streptococcus agalactiae serotype V HSP 1 e-value: 6.0E-59 bit: 154.0 Len: 612 Query Start:89 Query End:700 Subject Strand: null Subject Start: 133 Subject End: 336 ........................................................................................ W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T H L T S E L V I R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................ W Y I P A V I L G W V I I Q G L L K Y V G T R G T F I T V V V L Y C I G A V E T Y S V F I Q S T K F Y P L M S T Y M S I F Q T T R N G L F Y T P V Y L L A G Y L L Y D Y F N T D L F T K S R G L K Y I L F L L L L A L E N V L I Y F N Q G L D K N F F L L A P L C A V F L F N W S I R T S L F K E Y R L S P L K Q L S V Y Y F F L P P L F I G I V S Y C L K S T S L V A H H Q G K V I F V V T L A L T H A C A L L I I K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-59 bit: 98.6 Len: 423 Query Start:678 Query End:1100 Subject Strand: null Subject Start: 4 Subject End: 140 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q K R E V I E P K Q P V N S A L L S L F Q Y I A S V L V I L V H C Q R L F E H E A L H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P Y A L T Y F Q S L H W X X X X X X X X X X X X X X X I G M S Y Q L L V Y P R L S L .......................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K R S Q C V D N K Q H - N T S M I S L L Q Y L F S I L V I L V H S G R L F S Q D V I H F T F K S F L G R M A V P Y F L I C T A F F L R G R I Q - - - Q G L C N H S Y F R K L I K K Y S M W T I I Y L P Y G Y F F F E S L N I A K I Y L L P G F I V A F L Y L G M S H T L W Y I P A V I L .......................................................... Subject: UniRef90_Q301P8 Cluster: Similar to other proteins, putative transmembrane protein; n=1; Streptococcus suis 89/1591|Rep: Similar to other proteins, putative transmembrane protein - Streptococcus suis 89/1591 HSP 1 e-value: 8.0E-41 bit: 170.0 Len: 609 Query Start:92 Query End:700 Subject Strand: null Subject Start: 124 Subject End: 326 ........................................................................................... W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T H L T S E L V I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................... W Y M P A F F L G L I L V H L S L E K W G W R I T A C L A C L L Y L L G S V E T Y S A Y L A E S I F L T A F D N Y K T F F F T S R N G L F Y A P I F V L I G F Y L A N K L N H P I F Q H R Q K T K L L V C T A L L A F E A T V I Y L N Q G Y D K N F L F S L I P F T A Y L V A W T L T T D L F R K K K F Q F L K E Y A S Y Y Y F I H V I P V E I S F F F L E T S S L T K I Q Q G W L V F L I T I I T C Q L L S W L I I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-16 bit: 89.7 Len: 393 Query Start:672 Query End:1064 Subject Strand: null Subject Start: 8 Subject End: 133 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V N S A L L S L F Q Y I A S V L V I L V H C Q R L F E H E A L H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P Y A L T Y F Q S L H W X X X X X X X X X X X X X X X I G M S Y Q L L V Y P R L S L R L .............................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L N T S L L S L I Q F I G A I L V V A L H C R R L F E A D Q L H F I Q K S I F S R M V V P Y F M V T A S F F L R R N Y L S L S K Q - - - - - Y L I R Y S K Q Y L T W S I L Y L P F Y L I Y L T L Q E I P F L Y Y P L A L L V G L T Y T G T S Y Q L W Y M P A F F L G L .............................................................................................. Subject: UniRef90_Q3D562 Cluster: Membrane protein, putative; n=1; Streptococcus agalactiae COH1|Rep: Membrane protein, putative - Streptococcus agalactiae COH1 HSP 1 e-value: 3.0E-36 bit: 155.0 Len: 612 Query Start:89 Query End:700 Subject Strand: null Subject Start: 19 Subject End: 222 ........................................................................................ W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T H L T S E L V I R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................ W Y I P A V I L G W F I I Q G L L K Y V G T R G T F I T V V V L Y C I G A V E T Y S V F V Q S T K F Y P L M S T Y M S I F Q T T R N G L F Y T P V Y L L A G Y L L Y D Y F N T D L F T K S R G L K Y I L F L L L L A L E N V L I Y F N Q G L D K N F F L L A P L C A V F L F N W S I R T S L F K G Y R L S P L K Q L S V Y Y F F L H P L F V G I V S Y C L K S T S L V A H H Q G K V I F V V T L A L T H A C A L L I I R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q186I3 Cluster: Serine/alanine racemase; n=3; Clostridium difficile|Rep: Serine/alanine racemase - Clostridium difficile (strain 630) HSP 1 e-value: 1.0E-16 bit: 62.4 Len: 609 Query Start:92 Query End:700 Subject Strand: null Subject Start: 122 Subject End: 325 ........................................................................................... W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I - E T Y H A Y L S P - S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K - - N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L - - S F F L L K S Q Q L T K W E N G R W A F L L T I I L T H L T S E L V I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................... W Y L P A S I I G A S I A Y F L V K K L G L K Y S L V I T I V I Y V I G M F G D S Y Y G F L E K I P L L K N L Y G Y I F E V S D Y T R N G I F F A P V F F I L G G I I S N K S N Y - M S T K N S L I G F L I S F L L M L C E G M F L H - K L G V Q R H D S M Y I M L L P C M Y F L F T A L T F L K G S R A - - - R L L R T S S L I I Y I I H P M M I V V I R M F S K I F G I Q T V L V D N S L I H Y I V V S I A S F I A S I I I I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-16 bit: 48.5 Len: 249 Query Start:801 Query End:1049 Subject Strand: null Subject Start: 10 Subject End: 91 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L S L F Q Y I A S V L V I L V H C Q R L F E H E A L - H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P ............................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L D Y F R I I A A L L I I A I H T S P L L S Y S K M A D F V L T S I I A R I A V P F F F M L S G F F L I S T Y N Y N C N - - K L K S F L K N V L F I Y G I A I V I Y I P ............................................................................................................. Subject: UniRef90_Q9KHL7 Cluster: Amino acid racemase; n=2; Enterococcus faecalis|Rep: Amino acid racemase - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-14 bit: 57.8 Len: 447 Query Start:254 Query End:700 Subject Strand: null Subject Start: 122 Subject End: 271 ............................................................................................................................................................................................................................................................. W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I - E T Y H A Y L - S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K - - N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................. W Y L P A S I I G A A I A W Y L V K K V H Y R K A F L I A S I L Y I I G L F G D S Y Y G I V K S V S C L N V F Y N L I F Q L T D Y T R N G I F F A P I F F V L G G Y I S D S P N - - R Y R K K N Y I R I Y S L F C L M F G K - T L T L Q H F D I Q K H D S M Y V L L L P S V W C L F N L L L H F R G K R R T G L R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-14 bit: 45.8 Len: 249 Query Start:801 Query End:1049 Subject Strand: null Subject Start: 10 Subject End: 91 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L S L F Q Y I A S V L V I L V H C Q R L F E H - E A L H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P ............................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I D Y F R F I A A L L I V A I H T S P L F S F S E T G N F I F T R I V A P V A V P F F F M T S G F F L I S R Y T C N A E - - K L G A F I K K T T L I Y G V A I L L Y I P ............................................................................................................. Subject: UniRef90_Q8VPT3 Cluster: VanTc-2; n=2; Enterococcus casseliflavus|Rep: VanTc-2 - Enterococcus casseliflavus (Enterococcus flavescens) HSP 1 e-value: 2.0E-14 bit: 69.3 Len: 585 Query Start:116 Query End:700 Subject Strand: null Subject Start: 124 Subject End: 321 ................................................................................................................... W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G - A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K - - - - - R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................... W Y F P A I I T G S L L V M G L L T R L S F K Q V F F I A V G L Y V V G L G G D S W S G L A A Q T P I T P L Y S L I F Q L L D G T R N G I F F A P L F L I L G V L A S Q G Y Q P G R F A K K P A S P H R Y S Y L L I S L I C L L L E S Y L L H H F T T P K H D S M Y V F L P F V L - L F L F P I I Q Q W Q A P I I W K Q A G R L S L W L Y L L H P Y T I A V T H F L - - S Q K L P L L Q N N L I N F L V V L G L T .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-14 bit: 33.9 Len: 246 Query Start:795 Query End:1040 Subject Strand: null Subject Start: 10 Subject End: 95 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Q Y I A S V L V I L V H C - - - Q R L F E H E A L H F V Q K S M F G R M A V P F F L I S S A Y F F - - - R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P Y A ...................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R V I L A M M V V A I H C L P L H R L W P D G D I - L I T L T L F - R I A V P F F F M I S G Y Y V F S D L A T Q N S Y P A R Q R V W Q F I K K Q L Q V Y L I A T L L F L P L A ...................................................................................................................... Subject: UniRef90_Q9X3P3 Cluster: Serine/alanine racemase; n=2; Enterococcus gallinarum|Rep: Serine/alanine racemase - Enterococcus gallinarum HSP 1 e-value: 8.0E-14 bit: 62.4 Len: 585 Query Start:116 Query End:700 Subject Strand: null Subject Start: 123 Subject End: 314 ................................................................................................................... W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G - A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................... W Y F P A L I T G S L L L T S L L I H V S F K K V F W L A A G L Y L I G L G G D S W F G L I Q Q T P I E P F Y T A V F H L L D G T R N G I F F T P L F L C L G V L V R K Q S E K R S L S K T A L F F L I S L I G L L I E S A Y L H G F S I P K H D S M Y L F L P V V L F F L F P L I L R - - W H P H R T W K H P G Q L S L W L Y L L H P Y T I A G T H F L - - S Q K I S I L Q N N L I N Y L V V L I L T .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-14 bit: 38.9 Len: 267 Query Start:774 Query End:1040 Subject Strand: null Subject Start: 9 Subject End: 100 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Q Y I A S V L V I L V H C Q R L F E - - H E A L H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W - - - K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P Y A L T Y F Q S L ...................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R V I A A M M V V A I H C L P L H Y L W P E G D I L I T L T I F - R V A V P F F F M I S G Y Y V F A E L A V A N S Y P S R Q R V F N F I K K Q L K V Y L L A T L M F L P L A L - Y S Q T I ...................................................................................................................... Subject: UniRef90_Q30BE9 Cluster: VanTG2; n=1; Enterococcus faecalis|Rep: VanTG2 - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-13 bit: 53.9 Len: 498 Query Start:203 Query End:700 Subject Strand: null Subject Start: 122 Subject End: 286 .......................................................................................................................................................................................................... W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I - E T Y H A Y L S P - S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V - - Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................... W Y L P A S I I G A A I A W Y L V K K L N Y P K A L M V A S V L Y L I G L F G D S Y Y G I T E K I S C L N S L Y T Y I F Q V T D Y T R N G I F F A P P F F I L G G F I A D N R P Q I T F G K S - F L G F A I S L A L M L G E A M I L H H F D L Q R H D S M Y V F - L L P C M Y F L F I V I L H F K G K R L V S - - - L R T A S L I I Y I I Y P M M I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-13 bit: 45.8 Len: 249 Query Start:801 Query End:1049 Subject Strand: null Subject Start: 10 Subject End: 91 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L S L F Q Y I A S V L V I L V H C Q R L F E H - E A L H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P ............................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I D Y F R F I A A L L I V A I H T S P L S S F S E T G N F I F T R I V S R V A V P F F F M T S G F F L I S R Y T C N A E - - K L E A F I K K T T L I Y G V A I L L Y I P ............................................................................................................. Subject: UniRef90_Q93A44 Cluster: Amino acid racemase; n=1; Enterococcus faecalis|Rep: Amino acid racemase - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-11 bit: 60.8 Len: 624 Query Start:77 Query End:700 Subject Strand: null Subject Start: 125 Subject End: 331 ............................................................................ W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T - - L G A I E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y G Q I A L F Q K K R W X X X X X X X X X L V G E G V L V Y M R Q G L D K N F F F A L I P F T L F L F N W L L K T Q W K R E K N W R H L K D L S I L Y F F L H P I F I E L S F F L L K S Q Q L T K W E N G R W A F L L T I I L T H L T S E L V I R W R G K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................ W Y F P A S I I G T I L V T L L L R S I G F K L T V A F S T C L Y L V G L G G D S W Y G I T N Q V P L L N K L Y T F I F S W S D Y T R S G V F F T P V F L C L G I F A Y R V S K K L T A S K I L N L L F Y V F I I G M T F E S I F L H R F T N V K H D S M Y L L L P - S C A L I L F L M L L N W Q P K L K V K E S A D L T L L V Y I L H P L V I V I V H S I S K Y I P I L K - - N S L L N F L L V V V C S F I L A Q L L L N L K R K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 32.0 Len: 258 Query Start:792 Query End:1049 Subject Strand: null Subject Start: 8 Subject End: 97 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L S L F Q Y I A S V L V I L V H C Q R L F E H E A L - - - - - H F V Q K S M F G R M A V P F F L I S S A Y F F R V R W K - - - - - Q E P Q D V K L T L Y I K G I L K A Y G F W S L V Y L P Y A L ............................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I D L F R I F A A T M V V A I H T - - - F P F Q S I A P F L D E V I T L T V F - R V A V P F F F M I T G Y F L L G R L S L N F S Y N N N Q R V K K Y L Y K I G M I Y L Y S I - - L L Y F P L S L ............................................................................................................. Subject: UniRef90_Q832N5 Cluster: Racemase domain protein; n=1; Enterococcus faecalis|Rep: Racemase domain protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 3.0E-8 bit: 52.8 Len: 264 Query Start:798 Query End:1061 Subject Strand: null Subject Start: 4 Subject End: 91 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N S A L L S L F Q Y I A S V L V I L V H C Q R L F E H E A L H F V Q K S M F G R M A V P F F L I S S A Y F F - - R V R W K Q E P Q D V K L T L - Y I K G I L K A Y G F W S L V Y L P Y ................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N N D V L D A F K F I A A L S V V G I H T - - - F P S K S I L G S D L K I L A R F S V P F F F I V S G Y F L F K K I S F R E K E K D K K I L F N Y I K R I L K V Y L S W L I F Y I P F ................................................................................................. HSP 2 e-value: 3.0E-8 bit: 29.6 Len: 255 Query Start:449 Query End:703 Subject Strand: null Subject Start: 127 Subject End: 208 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S W Y I P A F X X X X X L V H F L Y R K L G P K K T F A L L L I L Y T L G A I - E T Y H A Y L S P S L L T D W Y D V Y A K L F F T S R N G L F Y T P I F I Y L G Y F L A D Y ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S W Y L I A L V M S V F I I Y Y I R S Y F G E K V L L T I G I V S F L I G V F T S T Y G K W Y F D I E W I K Q V P F Y G S I S F S - - - - M I S T I C Y V I I G Y F L A N Y ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Predict ORF larger than 30AA ================================================ Protein_Len: 59 Strand: + Start: 51 End: 227 .................................................. M L L T L Y M I F F P R H R I T N S D V R W V R I I V R R K A Q R P F S H L V S C W D L S R K K D N S I K I G W R K K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 473 End: 595 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M D K N G R I E E A I P A S E K E L G I D I V P V R Q Q T R R Q V G V I C L N S T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 609 End: 737 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M N K R A N V F L G P N F L Y K K W T S S K P K R K A G I Y Q E L V T H S D V E E R C ..................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 911 End: 1045 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K K L K R K E P P C D Q T Y S F E Q N A G L H V Q K A S D S E P E L P K R K R Y I E K G ................................................................................................................. Protein_Len: 58 Strand: + Start: 960 End: 1133 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N K M Q G F M F K K P L T V N Q N Y Q N G S D I L K K A E Q G R I D W L L W L Y D F S L L H Q A F S L R G L F K M ......................... Protein_Len: 31 Strand: + Start: 1045 End: 1137 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S R A E L T G C F G S M T S L F C I K L S P Y G G C L R C K ..................... Protein_Len: 60 Strand: - Start: 679 End: 891 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E N R H L L A S S S Y G A S S P L S A L A S I P L L D F C L S S L G F E L L W L G K F Y R Q Y V S D T E R R S A R A E M ........................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 651 End: 1103 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F F P V A M R G F M S K Q V F H L A E H E F L R Q C H V L I V L V S A I Y Q F L S L L A S N V P Q K P E I V E R K Q M M ....................................................... Protein_Len: 30 Strand: - Start: 345 End: 434 ........................................................................................................................................................................................................................................................................................................................................................ G T G A E H L G A S R R R S P F S K G V S S V A L T E E S M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 68 End: 694 ................................................................... F F L K A Y V D Y W D T L L S P S L Y A H Y T E I A G L T Y L I L L L A F T K K P G L K R Y L F H V L L L G L L F A P M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 46 Strand: - Start: 60 End: 197 ........................................................... R E I H N E E R A M S D G V R V D P P D P Y D D S P L G L P W K G V Q D A A P I Q A S L F M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 81 Start: 387 End: 403 ..................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAAGTCTTTTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -2.7 Tail_Score: -3.04515 Start: 406 End: 428 Full_Region: gatagccttatttca gaagaaacg ctggc tgtctcttc tgttggcaagtcttt .....................................................................................................................................................................................................................................................................................................................................................................................................................gaagaaacgctggctgtctcttc.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_1424:SSA_1428|SSA_1424:SSA_1428:Hydrolase, putative:hypothetical protein:<-<-:1434570..1435727 1158 atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Intra-Species Hit: Count: 1 Min: 1 Max: 1158 Len: 1158 Subject: NC_009009_SSA_1424_SSA_1428|Hydrolase, putative:hypothetical protein|NEGATIVE:NEGATIVE|[1434570,1435727]|1158 HSP 1 e-value: 7.0E-35 bit: 151.0 Len: 76 Query Start:1 Query End:76 Subject Strand: POSITIVE Subject Start: 1 Subject End: 76 atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgatttt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... atggaactcctttgaaatgttttatagttaattctattcaaaattgatagttgctcttaacgctctatatgatttt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-24 bit: 115.0 Len: 58 Query Start:1101 Query End:1158 Subject Strand: POSITIVE Subject Start: 1101 Subject End: 1158 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caagctttctccttacgggggttgtttaagatgtaaatgatcacttttttcccttgac Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUGGAACUCCUUUGAAAUGUUUUAUAGUUAAUUCUAUUCAAAAUUGAUAGUUGCUCUUAACGCUCUAUAUGAUUUUCUUCCCUCGCCAUCGAAUCACCAACUCUGACGUCAGGUGGGUCAGGAUAAUCGUCAGAAGGAAGGCCCAACGGCCAUUUUCCCACUUGGUCAGCUGCUGGGAUUUGAGCAGAAAGAAAGAUAACUCAAUAAAGAUAGGAUGGAGGAAGAAAUAAAGGAUACUUAGAUCUUUUAAAUGUCGCCAGUUUUUUUCACGCUUCCACUGAGUUUUUAACAGCCAAUUGAAUAAGAAGAGUGUAAAGGGAAUGAGAGCAAAGAAAAAAUUUUUAUCCAGUCCCUGCCUCAUGUAAACCAGCACUCCUUCGCCUACUAGGAAAAGACUUGCCAACAGAAGAGACAGCCAGCGUUUCUUCUGAAAUAAGGCUAUCUGCCCGUAAUCAGCUAGAAAGUAGCCUAAAUAGAUAAAAAUGGGCGUAUAGAAGAGGCCAUUCCUGCUAGUGAAAAAGAGCUUGGCAUAGACAUCGUACCAGUCCGUCAGCAGACUAGGCGACAGGUAGGCGUGAUAUGUCUCAAUAGCACCUAAGGUGUAGAGAAUUAACAAAAGGGCAAAUGUUUUCUUGGGACCCAACUUCCUAUACAAAAAAUGGACCAGCAGCAAGCCUAAGAGAAAGGCGGGGAUAUACCAAGAGCUGGUAACUCAUUCCGAUGUAGAAGAGCGCUGCUAGAAUAGCCAGCGGAGCUAGGUAGAGAGGCCAGUGCAGAGAUUGGAAGUAAGUCAAAGCAUAGGGAAGAUAGACCAAACUCCAAAAGCCAUAGGCCUUUAAAAUACCUUUGAUAUACAGAGUCAGUUUCACGUCUUGAGGCUCUUGCUUCCAGCGUACUCGGAAAAAAUAGGCUGAAGAAAUUAAAAAGAAAGGAACCGCCAUGCGACCAAACAUACUCUUUUGAACAAAAUGCAGGGCUUCAUGUUCAAAAAGCCUCUGACAGUGAACCAGAAUUACCAAAACGGAAGCGAUAUAUUGAAAAAGGCUGAGCAGGGCAGAAUUGACUGGCUGCUUUGGCUCUAUGACUUCUCUCUUUUGCAUCAAGCUUUCUCCUUACGGGGGUUGUUUAAGAUGUAAAUGAUCACUUUUUUCCCUUGAC ..((((.(((((((...((....((((......)))).))......((((..((.......)).)))).....((((((((..((((.(((((((.(((.(.(((((..((((((((....(((....)))........((((....)))).....)))))))))))))..).)))))))))).......((........))..........)).))..)))))))))))))))......((((........((((..((((((((((((((((((.((.(((((((..(((((.(((.........(((((....((((..((((((.((((...........(((((((.((((.................((((.........))))....(((.(((..((((((((((.......))))))))))........((((((((((((.....((((...((((((((...((.((...((((((.(((((((((..((((.....(((..(....)..))).)))).....((((.((((.(((.(((((....)).)))))).)))).).)))....((((((...(((((...))))).((((((................)))))).))))))....))).)))))).........((((((.....((((.......)))).((......))....))))))..))))))...)).))....)).))))))....))))..)))).)).))))))...))).))))))).))))))).(((.(((((((....((.........)).......(((.(((...))).))).......))))))).)))...............))))...))))))..))))....)))))......))).))))).)))))))....))...((...(((...))).............(((((..((...((((((((((..........))))).))).)).))...)))))...)).....)))))))......)))))))))))(((((((((((..........))))))).))))..))))........((((((((((((..(((((....)))))..))))..)))))))).))))......))))...... (-316.85) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUCAAGGGAAAAAAGUGAUCAUUUACAUCUUAAACAACCCCCGUAAGGAGAAAGCUUGAUGCAAAAGAGAGAAGUCAUAGAGCCAAAGCAGCCAGUCAAUUCUGCCCUGCUCAGCCUUUUUCAAUAUAUCGCUUCCGUUUUGGUAAUUCUGGUUCACUGUCAGAGGCUUUUUGAACAUGAAGCCCUGCAUUUUGUUCAAAAGAGUAUGUUUGGUCGCAUGGCGGUUCCUUUCUUUUUAAUUUCUUCAGCCUAUUUUUUCCGAGUACGCUGGAAGCAAGAGCCUCAAGACGUGAAACUGACUCUGUAUAUCAAAGGUAUUUUAAAGGCCUAUGGCUUUUGGAGUUUGGUCUAUCUUCCCUAUGCUUUGACUUACUUCCAAUCUCUGCACUGGCCUCUCUACCUAGCUCCGCUGGCUAUUCUAGCAGCGCUCUUCUACAUCGGAAUGAGUUACCAGCUCUUGGUAUAUCCCCGCCUUUCUCUUAGGCUUGCUGCUGGUCCAUUUUUUGUAUAGGAAGUUGGGUCCCAAGAAAACAUUUGCCCUUUUGUUAAUUCUCUACACCUUAGGUGCUAUUGAGACAUAUCACGCCUACCUGUCGCCUAGUCUGCUGACGGACUGGUACGAUGUCUAUGCCAAGCUCUUUUUCACUAGCAGGAAUGGCCUCUUCUAUACGCCCAUUUUUAUCUAUUUAGGCUACUUUCUAGCUGAUUACGGGCAGAUAGCCUUAUUUCAGAAGAAACGCUGGCUGUCUCUUCUGUUGGCAAGUCUUUUCCUAGUAGGCGAAGGAGUGCUGGUUUACAUGAGGCAGGGACUGGAUAAAAAUUUUUUCUUUGCUCUCAUUCCCUUUACACUCUUCUUAUUCAAUUGGCUGUUAAAAACUCAGUGGAAGCGUGAAAAAAACUGGCGACAUUUAAAAGAUCUAAGUAUCCUUUAUUUCUUCCUCCAUCCUAUCUUUAUUGAGUUAUCUUUCUUUCUGCUCAAAUCCCAGCAGCUGACCAAGUGGGAAAAUGGCCGUUGGGCCUUCCUUCUGACGAUUAUCCUGACCCACCUGACGUCAGAGUUGGUGAUUCGAUGGCGAGGGAAGAAAAUCAUAUAGAGCGUUAAGAGCAACUAUCAAUUUUGAAUAGAAUUAACUAUAAAACAUUUCAAAGGAGUUCCAU ....((((((......(((((...((.((((.........((....)).....((.....))..)))).(((((((((((.(((..(((((.(((......)))..)))))..((((((....((((((.(((........)))...((...(((((.(((.(((((((((....((((..(((..((((....(((....))).))))..)))..)))).......................((((((.(((((.....))))).))))))...)))))))))..))))))))...))....)))))).))))))........))))))))))))))...)).)))))....)))))).(((((.(((((..((((..((((.((((((((((..((.((((((.....(((.....((((((((.(((((((.....)))).))).((((((...)))))).......((((.......))))..)))))))).)))......)).)))).))..)))))...((((((((..........))))..))))..........)))))....)))).......(((((((..((((.((((((((....))))))))..)))).....((((((((((.(..(((((((.(((..((((((...........................))))))))).)))).)))..).)))).(((((((...((((....))))....))))))).......))))))............)))))))..)))).((..((((..((((((((((((..((((....))))..))))))).)))))........(((.(((((..........((((.........))))))))).)))....))))..)).........))).)).)))))((((((.((((((((((((((..(((....((((((.............))))))...(((((..(((((((.(((((.....((((....)))).....((....)).........))))).))..))))).))))).)))..)))))...)))))))))....(((((.((.......))..((((((....)).))))......))))).........))))))....... (-316.05) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1035 130 81 221 172 NC_009009:SSA_1424|5end_Hydrolase,_putative_1434479..1434709_NEGATIVE 419 570 521 230 179 NC_009009:SSA_0319|5end_Branched-chain_amino_acid_permease_(L-methionine,_L-isoleucine,_leucine_and_valine),_putative_312721..312951_POSITIVE 417 769 726 62 20 NC_009009:SSA_1084|5end_Conserved_uncharacterized_protein_1101675..1101905_POSITIVE 412 1089 1044 143 99 NC_009009:SSA_0490|5end_Cobalamin_5'-phosphate_synthase,_putative_490236..490466_POSITIVE 408 576 532 52 8 NC_009009:SSA_0421|5end_Phosphoglycerate_mutase_family_protein,_putative_419564..419794_POSITIVE 407 789 742 69 18 NC_009009:SSA_0173|5end_23S_rRNA_m1G745_methyltransferase,_putative_170535..170765_NEGATIVE 400 779 733 192 144 NC_009009:SSA_2281|5end_hypothetical_protein_2282370..2282600_NEGATIVE 400 188 141 146 105 NC_009009:SSA_0620|5end_hypothetical_protein_612325..612555_NEGATIVE 392 798 751 66 29 NC_009009:SSA_0260|5end_Manganese/Zinc_ABC_transporter_substrate-binding_lipoprotein_precursor,_putative_254585..254815_NEGATIVE 387 779 731 64 21 NC_009009:SSA_1454|5end_hypothetical_protein_1461100..1461330_NEGATIVE 385 584 543 79 32 NC_009009:SSA_2099|5end_ABC-type_arginine/histidine_transporter,_permease_protein,_putative_2104313..2104543_NEGATIVE 383 790 746 44 4 NC_009009:SSA_1374|5end_Multidrug_ABC_transporter,_ATPase_and_permease_components,_putative_1393095..1393325_NEGATIVE 381 767 721 62 15 NC_009009:SSA_0406|5end_hypothetical_protein_402918..403148_NEGATIVE 379 780 735 49 2 NC_009009:SSA_0497|5end_Nickel_ABC_transporter,_putative_496922..497152_POSITIVE 378 699 659 69 21 NC_009009:SSA_2312|5end_hypothetical_protein_2315281..2315511_NEGATIVE 378 110 69 74 18 NC_009009:SSA_0183|5end_hypothetical_protein_187646..187876_POSITIVE 377 147 104 55 12 NC_009009:SSA_0092|5end_V-type_sodium_ATPase,_subunit_B,_putative_92895..93125_POSITIVE 376 900 858 87 41 NC_009009:SSA_0470|5end_Precorrin-4_methylase,_putative_472879..473109_POSITIVE 375 777 739 173 129 NC_009009:SSA_0098|5end_Hydrolase,_haloacid_dehalogenase-like_family,_putative_99422..99652_POSITIVE 374 570 522 227 167 NC_009009:SSA_0522|5end_Ethanolamine_utilization_protein,_putative_521067..521297_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 417 769 726 59 17 NC_009009:SSA_1083|3end_Conserved_uncharacterized_protein_1101752..1101902_POSITIVE 412 1089 1044 146 102 NC_009009:SSA_0489|3end_Adenosylcobinamide_kinase_/_adenosylcobinamide_phosphate_guanyltransferase,_putative_490319..490469_POSITIVE 405 587 544 69 20 NC_009009:SSA_1323|3end_hypothetical_protein_1339788..1339938_NEGATIVE 400 188 141 149 108 NC_009009:SSA_0621|3end_SOS_responce_UmuC_protein,_putative_612322..612472_NEGATIVE 398 790 744 54 3 NC_009009:SSA_1375|3end_Multidrug_ABC_transporter,_ATPase_and_permease_components,_putative_1393085..1393235_NEGATIVE 397 780 732 56 6 NC_009009:SSA_0496|3end_Succinylglutamate_desuccinylase_/_Aspartoacylase_family,_putative_497009..497159_POSITIVE 392 798 751 46 9 NC_009009:SSA_0261|3end_ABC-type_Mn2+/Zn2+_transport_systems,_permease_component,_putative_254605..254755_NEGATIVE 381 778 731 145 112 NC_009009:SSA_0956|3end_surface_protein_D_965418..965568_POSITIVE 381 767 721 69 22 NC_009009:SSA_0407|3end_ABC-type_multidrug_transport_system_(3-component_subtilin_immunity_exporter),_ATPase_component,_putative_402911..403061_NEGATIVE 377 147 104 68 25 NC_009009:SSA_0091|3end_V-type_sodium_ATPase,_subunit_A,_putative_92988..93138_POSITIVE 376 900 858 87 41 NC_009009:SSA_0469|3end_Precorrin-6B_methylase_2,putative_472959..473109_POSITIVE 370 157 111 79 13 NC_009009:SSA_0497|3end_Nickel_ABC_transporter,_putative_497997..498147_POSITIVE 369 780 735 50 3 NC_009009:SSA_2168|3end_Glycerol-3-phosphate_dehydrogenase_[NAD(P)+],_putative_2168563..2168713_POSITIVE 363 174 135 104 60 NC_009009:SSA_1439|3end_hypothetical_protein_1443624..1443774_NEGATIVE 360 572 534 45 8 NC_009009:SSA_1117|3end_hypothetical_protein_1143386..1143536_POSITIVE 359 770 721 63 16 NC_009009:SSA_0791|3end_UDP-N-acetylglucosamine-like_protein,_putative_774705..774855_POSITIVE 357 579 531 68 16 NC_009009:SSA_2086|3end_hypothetical_protein_2090397..2090547_NEGATIVE 353 1089 1043 151 98 NC_009009:SSA_2103|3end_hypothetical_protein_2106500..2106650_NEGATIVE 351 760 722 61 18 NC_009009:SSA_0899|3end_Conserved_permease,_putative_891161..891311_POSITIVE 347 1070 1021 134 72 NC_009009:SSA_0806|3end_hypothetical_protein_789478..789628_POSITIVE