Origin IGS: tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtaaagtttagaaggatttgattcctttcagctctagttttttattaatatgatggtattgaaaatgaagaaaacgaaatctatgattatcataggtggctttcaaggtcaaaacatcttttatgatgtaaaaagtaaaaaagtattttcaaataaagtaaatgagagagtttttcctaatctcaggtggttagtagtagtgattggaattttgggaaatgcttttctcgttcaagtaaacaatataaaatttgaatcccctattttaagagtaattgttttgagtgcgtgtcttattcttatatctttggtttgtcactttggatttaaagatgagtatttagggcaaaacgttgaagcatttaatcccaaattatatgaacatgtaggttggaagaattttttagaagaagagagaaaccgattatacattcttctaattacatttgcagtgagttctttcttaactgtttttcaaatgagagaatatttgaacgctcctaccatgacaaacttaatagaagttattgccttttattttatattttatatggtaacagcaaaaagcaattttatgaaaagaatggcggcaataaagcaattgataaaaaataaataaagagctttagcttataatctatgaatcaaggtaatgtatgaccaattacttactgaatggaagtgctatgattatgaaccgtcgccacttggaagaaatca Mask Tandem Repeat Region ================================================ tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Find is-nt database================================================ Query_seq: SSA_1389:SSA_1390|SSA_1389:SSA_1390:hypothetical protein:hypothetical protein:<-<-:1405003..1405722 720 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1389:SSA_1390|SSA_1389:SSA_1390:hypothetical protein:hypothetical protein:<-<-:1405003..1405722 720 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1389:SSA_1390|SSA_1389:SSA_1390:hypothetical protein:hypothetical protein:<-<-:1405003..1405722 720 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 108 End: 203 ........................................................................................................... M F Y Q L L Y C R H S F H K I A F C C Y H I K Y K I K G N N F Y ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 280 End: 402 ....................................................................................................................................................................................................................................................................................... M R R M Y N R F L S S S K K F F Q P T C S Y N L G L N A S T F C P K Y S S L N P K .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 594 End: 710 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M I K D V L T L K A T Y D N H R F R F L H F Q Y H H I N K K L E L K G I K S F .......... Protein_Len: 60 Strand: - Start: 109 End: 330 ............................................................................................................ Q K K S N G Y L I Y F L L C Y S R N L K D H Y S R E F I R E N S F C N L F F E S C I Y N S S H I I P K E R R R F F E E M ...................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 105 End: 677 ........................................................................................................ A N G L I G I V V V L W R L N P F V R E N V K N S F V K K S K V D Y F I N Q G Q F G G I I I M S K T K K M K L V M M N M ........................................... tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 634 End: 663 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAATGAAGAAAACGAAATCTATGAT......................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 141 End: 170 ............................................................................................................................................TTTCATAAAATTGCTTTTTGCTGTTACCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SSA_1389:SSA_1390|SSA_1389:SSA_1390:hypothetical protein:hypothetical protein:<-<-:1405003..1405722 720 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatacttttttactttttacatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Intra-Species Hit: Count: 1 Min: 1 Max: 720 Len: 720 Subject: NC_009009_SSA_1389_SSA_1390|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1405003,1405722]|720 HSP 1 e-value: 0.0 bit: 1146.0 Len: 578 Query Start:1 Query End:578 Subject Strand: POSITIVE Subject Start: 1 Subject End: 578 tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatac.............................................................................................................................................. tgatttcttccaagtggcgacggttcataatcatagcacttccattcagtaagtaattggtcatacattaccttgattcatagattataagctaaagctctttatttattttttatcaattgctttattgccgccattcttttcataaaattgctttttgctgttaccatataaaatataaaataaaaggcaataacttctattaagtttgtcatggtaggagcgttcaaatattctctcatttgaaaaacagttaagaaagaactcactgcaaatgtaattagaagaatgtataatcggtttctctcttcttctaaaaaattcttccaacctacatgttcatataatttgggattaaatgcttcaacgttttgccctaaatactcatctttaaatccaaagtgacaaaccaaagatataagaataagacacgcactcaaaacaattactcttaaaataggggattcaaattttatattgtttacttgaacgagaaaagcatttcccaaaattccaatcactactactaaccacctgagattaggaaaaactctctcatttactttatttgaaaatac.............................................................................................................................................. HSP 2 e-value: 1.0E-66 bit: 256.0 Len: 129 Query Start:592 Query End:720 Subject Strand: POSITIVE Subject Start: 592 Subject End: 720 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acatcataaaagatgttttgaccttgaaagccacctatgataatcatagatttcgttttcttcattttcaataccatcatattaataaaaaactagagctgaaaggaatcaaatccttctaaactttac Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUUCUUCCAAGUGGCGACGGUUCAUAAUCAUAGCACUUCCAUUCAGUAAGUAAUUGGUCAUACAUUACCUUGAUUCAUAGAUUAUAAGCUAAAGCUCUUUAUUUAUUUUUUAUCAAUUGCUUUAUUGCCGCCAUUCUUUUCAUAAAAUUGCUUUUUGCUGUUACCAUAUAAAAUAUAAAAUAAAAGGCAAUAACUUCUAUUAAGUUUGUCAUGGUAGGAGCGUUCAAAUAUUCUCUCAUUUGAAAAACAGUUAAGAAAGAACUCACUGCAAAUGUAAUUAGAAGAAUGUAUAAUCGGUUUCUCUCUUCUUCUAAAAAAUUCUUCCAACCUACAUGUUCAUAUAAUUUGGGAUUAAAUGCUUCAACGUUUUGCCCUAAAUACUCAUCUUUAAAUCCAAAGUGACAAACCAAAGAUAUAAGAAUAAGACACGCACUCAAAACAAUUACUCUUAAAAUAGGGGAUUCAAAUUUUAUAUUGUUUACUUGAACGAGAAAAGCAUUUCCCAAAAUUCCAAUCACUACUACUAACCACCUGAGAUUAGGAAAAACUCUCUCAUUUACUUUAUUUGAAAAUACUUUUUUACUUUUUACAUCAUAAAAGAUGUUUUGACCUUGAAAGCCACCUAUGAUAAUCAUAGAUUUCGUUUUCUUCAUUUUCAAUACCAUCAUAUUAAUAAAAAACUAGAGCUGAAAGGAAUCAAAUCCUUCUAAACUUUAC (((((((((.((.((((((..((..................))...(((((((((((((((....((......))....((((((.(..(((....)))..).)))))).....))))))))).)))))).))))))((((((.....(((((......(((.((((((((((((......((((.(((.......))).))))...))))).))))))).))).(((((((........)))))))...)))))..)))))).(((.......((((((..(((((((.((((....((((..........................))))......((((.(((((((((((...(((((((..........(((((.....(((.((((......))))))).............(((((.(((..................))).)))))...)))))...............((((((....))))))...)))))))))))))).........................(((((..((......)).)))))......)))).)))).)))).))))).))..)))))).......((((..((((....((((((...(((((.....))))).....)))))).......))))...)))).................))).)).))))))))).................. (-118.71) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUAAAGUUUAGAAGGAUUUGAUUCCUUUCAGCUCUAGUUUUUUAUUAAUAUGAUGGUAUUGAAAAUGAAGAAAACGAAAUCUAUGAUUAUCAUAGGUGGCUUUCAAGGUCAAAACAUCUUUUAUGAUGUAAAAAGUAAAAAAGUAUUUUCAAAUAAAGUAAAUGAGAGAGUUUUUCCUAAUCUCAGGUGGUUAGUAGUAGUGAUUGGAAUUUUGGGAAAUGCUUUUCUCGUUCAAGUAAACAAUAUAAAAUUUGAAUCCCCUAUUUUAAGAGUAAUUGUUUUGAGUGCGUGUCUUAUUCUUAUAUCUUUGGUUUGUCACUUUGGAUUUAAAGAUGAGUAUUUAGGGCAAAACGUUGAAGCAUUUAAUCCCAAAUUAUAUGAACAUGUAGGUUGGAAGAAUUUUUUAGAAGAAGAGAGAAACCGAUUAUACAUUCUUCUAAUUACAUUUGCAGUGAGUUCUUUCUUAACUGUUUUUCAAAUGAGAGAAUAUUUGAACGCUCCUACCAUGACAAACUUAAUAGAAGUUAUUGCCUUUUAUUUUAUAUUUUAUAUGGUAACAGCAAAAAGCAAUUUUAUGAAAAGAAUGGCGGCAAUAAAGCAAUUGAUAAAAAAUAAAUAAAGAGCUUUAGCUUAUAAUCUAUGAAUCAAGGUAAUGUAUGACCAAUUACUUACUGAAUGGAAGUGCUAUGAUUAUGAACCGUCGCCACUUGGAAGAAAUCA ....((((..((((((......)))))).))))...(((((((.(((((((....)))))))......)))))))........(((((.((.((((((((.((((..((((..(((((......)))))............((((((((((....((.((..(((((.((......))..)))))..)).))..(((((((((((((...(((((((((((((((...(((((((((............))))))....................(((((((((((((..(((((.....((.((((..(((.....)))..)))).)))))))..))))))))))))).)))..))))))))...))))))).........((((((((..((((((((((.(((((((((...................))))))))).............))))))))))..........((((((((......))))))))....)))).)))).................(((((((((....((((((..(((((.(.(((.(((.....((.(((((......))))).)).((......)).......................)))))).).)))))..))))))..))))))))).....)))))))).)))))..)))))))))).))))..)))).....))))))))...))))))) (-155.85) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 904 50 1 141 92 NC_009009:SSA_1389|5end_hypothetical_protein_1404912..1405142_NEGATIVE 342 140 91 110 63 NC_009009:SSA_1154|5end_hypothetical_protein_1182661..1182891_POSITIVE 318 377 331 147 100 NC_009009:SSA_2222|5end_Tyrosine-protein_kinase_Wze,_putative_2223997..2224227_NEGATIVE 275 670 621 103 66 NC_009009:SSA_0469|5end_Precorrin-6B_methylase_2,putative_472310..472540_POSITIVE 271 645 603 104 51 NC_009009:SSA_1775|5end_Potassium_uptake_protein,_Trk_family,_putative_1761284..1761514_POSITIVE 271 170 130 169 131 NC_009009:SSA_1254|5end_hypothetical_protein_1281484..1281714_NEGATIVE 271 136 91 121 78 NC_009009:SSA_0316|5end_hypothetical_protein_310576..310806_POSITIVE 269 137 92 170 113 NC_009009:SSA_2221|5end_Cps9E,_putative_2223257..2223487_NEGATIVE 269 631 595 125 88 NC_009009:SSA_1540|5end_hypothetical_protein_1545268..1545498_NEGATIVE 266 329 283 155 108 NC_009009:SSA_1370|5end_CAAX_amino_terminal_protease_family,_putative_1386968..1387198_NEGATIVE 263 365 324 131 96 NC_009009:SSA_0893|5end_ATP-binding_cassette_transporter-like_protein,_putative_884527..884757_POSITIVE 262 47 1 64 7 NC_009009:SSA_0139|5end_Copper_transport_operon_or_penicillinase_transcriptional_repressor,_putative_134183..134413_POSITIVE 261 229 187 156 114 NC_009009:SSA_0933|5end_Acetyltransferase,_GNAT_family,_putative_942734..942964_POSITIVE 260 49 7 117 61 NC_009009:SSA_1996|5end_DNA-directed_RNA_polymerase_delta_subunit,_putative_1994024..1994254_NEGATIVE 258 49 4 198 151 NC_009009:SSA_0567|5end_Isochorismitase_family_protein,_putative_560805..561035_POSITIVE 254 58 13 57 8 NC_009009:SSA_1776|5end_Potassium_uptake_protein,_Trk_family,_putative_1762639..1762869_POSITIVE 254 229 187 173 130 NC_009009:SSA_1179|5end_Carbamoylphosphate_synthase_large_subunit_/_biotin_carboxylase,_putative_1207806..1208036_NEGATIVE 253 537 491 62 20 NC_009009:SSA_0459|5end_hypothetical_protein_462098..462328_POSITIVE 251 163 121 53 4 NC_009009:SSA_0386|5end_Glycine-betaine_ABC_transporter,_ATPase_component,_putative_381455..381685_NEGATIVE 249 409 361 116 63 NC_009009:SSA_1759|5end_hypothetical_protein_1746969..1747199_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 342 140 91 117 70 NC_009009:SSA_1153|3end_HemK_protein,_putative_1182748..1182898_POSITIVE 318 377 331 136 89 NC_009009:SSA_2223|3end_Capsular_polysaccharide_biosynthesis_protein_Wzd_(chain_length_regulator),_putative_2224008..2224158_NEGATIVE 275 670 621 131 94 NC_009009:SSA_0468|3end_Precorrin-6y_C5,15-methyltransferase-like,_putative_472418..472568_POSITIVE 271 136 91 111 68 NC_009009:SSA_0315|3end_Transcriptional_regulator,_MarR_family,_putative_310646..310796_POSITIVE 269 137 92 128 71 NC_009009:SSA_2222|3end_Tyrosine-protein_kinase_Wze,_putative_2223299..2223449_NEGATIVE 269 631 595 82 45 NC_009009:SSA_1541|3end_Peptidase,_U32_family,_putative_1545311..1545461_NEGATIVE 266 329 283 72 25 NC_009009:SSA_1371|3end_FmtA-like_protein,_putative_1387051..1387201_NEGATIVE 263 135 97 120 81 NC_009009:SSA_2340|3end_hypothetical_protein_2341539..2341689_NEGATIVE 263 365 324 102 67 NC_009009:SSA_0892|3end_ATP-binding_cassette_lipoprotein,_putative_884578..884728_POSITIVE 261 229 187 146 104 NC_009009:SSA_0932|3end_hypothetical_protein_942804..942954_POSITIVE 257 406 363 103 60 NC_009009:SSA_1087|3end_ABC-type_transporter_(antibiotic_resistance_protein),_ATPase_component,_putative_1106472..1106622_POSITIVE 254 58 13 51 2 NC_009009:SSA_1775|3end_Potassium_uptake_protein,_Trk_family,_putative_1762713..1762863_POSITIVE 248 50 1 74 14 NC_009009:SSA_0450|3end_Elongation_factor_P,_putative_451227..451377_POSITIVE 247 163 121 135 92 NC_009009:SSA_1005|3end_Sugar_ABC_transporter,_permease_protein,_putative_1006941..1007091_POSITIVE 246 161 121 79 41 NC_009009:SSA_1055|3end_Conserved_uncharacterized_protein_1071797..1071947_POSITIVE 245 169 121 151 103 NC_009009:SSA_2121|3end_Cell_wall_surface_anchor_family_protein,_putative_2122222..2122372_NEGATIVE 245 165 122 52 14 NC_009009:SSA_0163|3end_hypothetical_protein_162542..162692_POSITIVE 244 134 97 120 79 NC_009009:SSA_0471|3end_CbiG_protein,_putative_474783..474933_POSITIVE 243 56 12 120 69 NC_009009:SSA_2354|3end_hypothetical_protein_2355605..2355755_NEGATIVE 243 659 613 84 33 NC_009009:SSA_2082|3end_Carbohydrate_kinase,_FGGY_family,_putative_2085351..2085501_NEGATIVE