Origin IGS: ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agatgtctccttcgttttataacacaaaatacagccctgctttatttagcagagctgtttttagttgcacaaagcagacacaggagtgtctaagtaggattattcgttcataggcttccagcttacgctgtcataggagcgacaggattcatctaaagataagcaaatagaagctagaaagcacaaaaaatgaacatcccgcggatatgcagaaacatgacaaaatctactaaataaagtttcctttaaaaaatagacttaatttttcatgtctccgtgtacctccgaaatagttctgctttaagtctaacagaagaaagtaaattcgtcaagcgctttcaaataaataaaaatttttaaaagatttttggagcaaatttttataaactctctaagaatattgatttcaaggcttttaagctgattttgatatataattttttaattatatatcaaaatttgacatataccagaaaattatatataatcgtcttgtatataaaaattatatatataaaatgattatacaaataggcctaaaatttgtaaaagataagaagagctggaatgtgatagattccggtcgtcattttaaattgtatctaaggagtaagaaacc Mask Tandem Repeat Region ================================================ ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Find is-nt database================================================ Query_seq: SSA_1372:SSA_1373|SSA_1372:SSA_1373:hypothetical protein:ATPase components of ABC transporters with duplicated ATPase domains, multidrug transport system, putative:<-->:1389228..1389846 619 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1372:SSA_1373|SSA_1372:SSA_1373:hypothetical protein:ATPase components of ABC transporters with duplicated ATPase domains, multidrug transport system, putative:<-->:1389228..1389846 619 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1372:SSA_1373|SSA_1372:SSA_1373:hypothetical protein:ATPase components of ABC transporters with duplicated ATPase domains, multidrug transport system, putative:<-->:1389228..1389846 619 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 182 End: 310 ..................................................................................................................................................................................... M I Y Q N Q L K S L E I N I L R E F I K I C S K N L L K I F I Y L K A L D E F T F F C ..................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 295 End: 387 ...................................................................................................................................................................................................................................................................................................... M Y F L L L D L K Q N Y F G G T R R H E K L S L F F K G N F I ........................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 499 End: 600 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E A Y E R I I L L R H S C V C F V Q L K T A L L N K A G L Y F V L ................... Protein_Len: 36 Strand: - Start: 510 End: 617 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S R I I R S L C E Q T Q K T C S F V A R S F L A P S Y K T N Y F S P S M .. Protein_Len: 35 Strand: - Start: 263 End: 367 ...................................................................................................................................................................................................................................................................... F N K N I Q F R K V F K S E E T L S L A S S N R L Y V S V H F I L D M ............................................................................................................................................................................................................................................................ Protein_Len: 52 Strand: - Start: 101 End: 256 .................................................................................................... K I Y I I K I Y L V I I Y L K R T Y T L N Q Y I I L F N Y I L I L K F A K F D I N K S L K Y F N A G F M ........................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 56 Strand: - Start: 3 End: 170 .. K K S R L Y L K F H R G S D I V N W S K K D K V F K L G I Q I I M K Y I Y N K Y V L R N Y I I K Q Y I D F K S M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 91 Start: 132 End: 161 ...................................................................................................................................TTTGACATATACCAGAAAATTATATATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 89 Start: 69 End: 98 ....................................................................TTTTACAAATTTTAGGCCTATTTGTATAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 86 Start: 287 End: 316 ..............................................................................................................................................................................................................................................................................................CTTGACGAATTTACTTTCTTCTGTTAGACT............................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 114 End: 143 .................................................................................................................ATTTTTATATACAAGACGATTATATATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -12.9 Tail_Score: -3.63627 Start: 162 End: 195 Full_Region: aggcttttaagctga ttttgatatataatt tttt aattatatatcaaaa tttgacatataccag .................................................................................................................................................................ttttgatatataattttttaattatatatcaaaa........................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 70 HP_score: -4.0 Tail_Score: -4.8667 Start: 243 End: 253 Full_Region: aatttttaaaagatt tttg gag caaa tttttataaactctc ..................................................................................................................................................................................................................................................tttggagcaaa.............................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 81 HP_score: -4.7 Tail_Score: -5.43621 Start: 409 End: 429 Full_Region: ATTTTGTCATGTTTC TGCATATCC GCG GGATGTTCA TTTTTTGTGCTTTCT ........................................................................................................................................................................................................................................................................................................................................................................................................................TGCATATCCGCGGGATGTTCA.............................................................................................................................................................................................. TransTerm Strand: + Conf: 91 HP_score: -8.6 Tail_Score: -4.73682 Start: 561 End: 590 Full_Region: CTTTGTGCAACTAAA AACAGCTCTGCT AAATAA AGCAGGGCTGTA TTTTGTGTTATAAAA ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTCTGCTAAATAAAGCAGGGCTGTA............................. TransTerm Strand: + Conf: 100 HP_score: -11.2 Tail_Score: -3.98053 Start: 563 End: 588 Full_Region: TTGTGCAACTAAAAA CAGCTCTGCT AAATAA AGCAGGGCTG TATTTTGTGTTATAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTGCTAAATAAAGCAGGGCTG............................... Find igs database================================================ Query_seq: SSA_1372:SSA_1373|SSA_1372:SSA_1373:hypothetical protein:ATPase components of ABC transporters with duplicated ATPase domains, multidrug transport system, putative:<-->:1389228..1389846 619 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttcttatcttttacaaattttaggcctatttgtataatcattttatatatataatttttatatacaagacgattatatataattttctggtatatgtcaaattttgatatataattaaaaaattatatatcaaaatcagcttaaaagccttgaaatcaatattcttagagagtttataaaaatttgctccaaaaatcttttaaaaatttttatttatttgaaagcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct Intra-Species Hit: Count: 1 Min: 1 Max: 619 Len: 619 Subject: NC_009009_SSA_1372_SSA_1373|hypothetical protein:ATPase components of ABC transporters with duplicated ATPase domains, multidrug transport system, putative|NEGATIVE:POSITIVE|[1389228,1389846]|619 HSP 1 e-value: 0.0 bit: 666.0 Len: 336 Query Start:284 Query End:619 Subject Strand: POSITIVE Subject Start: 284 Subject End: 619 ...........................................................................................................................................................................................................................................................................................gcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct ...........................................................................................................................................................................................................................................................................................gcgcttgacgaatttactttcttctgttagacttaaagcagaactatttcggaggtacacggagacatgaaaaattaagtctattttttaaaggaaactttatttagtagattttgtcatgtttctgcatatccgcgggatgttcattttttgtgctttctagcttctatttgcttatctttagatgaatcctgtcgctcctatgacagcgtaagctggaagcctatgaacgaataatcctacttagacactcctgtgtctgctttgtgcaactaaaaacagctctgctaaataaagcagggctgtattttgtgttataaaacgaaggagacatct HSP 2 e-value: 2.0E-27 bit: 125.0 Len: 63 Query Start:1 Query End:63 Subject Strand: POSITIVE Subject Start: 1 Subject End: 63 ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ggtttcttactccttagatacaatttaaaatgacgaccggaatctatcacattccagctcttc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 3.0E-11 bit: 71.9 Len: 36 Query Start:197 Query End:232 Subject Strand: POSITIVE Subject Start: 197 Subject End: 232 ....................................................................................................................................................................................................cagcttaaaagccttgaaatcaatattcttagagag................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................cagcttaaaagccttgaaatcaatattcttagagag................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGUUUCUUACUCCUUAGAUACAAUUUAAAAUGACGACCGGAAUCUAUCACAUUCCAGCUCUUCUUAUCUUUUACAAAUUUUAGGCCUAUUUGUAUAAUCAUUUUAUAUAUAUAAUUUUUAUAUACAAGACGAUUAUAUAUAAUUUUCUGGUAUAUGUCAAAUUUUGAUAUAUAAUUAAAAAAUUAUAUAUCAAAAUCAGCUUAAAAGCCUUGAAAUCAAUAUUCUUAGAGAGUUUAUAAAAAUUUGCUCCAAAAAUCUUUUAAAAAUUUUUAUUUAUUUGAAAGCGCUUGACGAAUUUACUUUCUUCUGUUAGACUUAAAGCAGAACUAUUUCGGAGGUACACGGAGACAUGAAAAAUUAAGUCUAUUUUUUAAAGGAAACUUUAUUUAGUAGAUUUUGUCAUGUUUCUGCAUAUCCGCGGGAUGUUCAUUUUUUGUGCUUUCUAGCUUCUAUUUGCUUAUCUUUAGAUGAAUCCUGUCGCUCCUAUGACAGCGUAAGCUGGAAGCCUAUGAACGAAUAAUCCUACUUAGACACUCCUGUGUCUGCUUUGUGCAACUAAAAACAGCUCUGCUAAAUAAAGCAGGGCUGUAUUUUGUGUUAUAAAACGAAGGAGACAUCU .........((((((.(((((((.......((((((((((((..............((.((....................)))).....(((((((((.((((.((((((.......)))))).)))).))))))))).....)))))))...))))).((((((((((((((((....))))))))))))))))..((...(((((...........(((((...((((((((.(((((((((.......)))).))))).))))))))........((((((((..((.(((......))).))................((((.((..((..((((..(((((((((((......(((((((((...(((((....)))))...)))))))))..)))))))))))..))))..))..)))))).......))))))))..(((((((((((((((((....)))))...((((((......)))))).))))).)))))))........))))).........((((((....)))))))))))..))........(((((((((((......)))))))))))...)))))))........))))))...... (-162.55) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAUGUCUCCUUCGUUUUAUAACACAAAAUACAGCCCUGCUUUAUUUAGCAGAGCUGUUUUUAGUUGCACAAAGCAGACACAGGAGUGUCUAAGUAGGAUUAUUCGUUCAUAGGCUUCCAGCUUACGCUGUCAUAGGAGCGACAGGAUUCAUCUAAAGAUAAGCAAAUAGAAGCUAGAAAGCACAAAAAAUGAACAUCCCGCGGAUAUGCAGAAACAUGACAAAAUCUACUAAAUAAAGUUUCCUUUAAAAAAUAGACUUAAUUUUUCAUGUCUCCGUGUACCUCCGAAAUAGUUCUGCUUUAAGUCUAACAGAAGAAAGUAAAUUCGUCAAGCGCUUUCAAAUAAAUAAAAAUUUUUAAAAGAUUUUUGGAGCAAAUUUUUAUAAACUCUCUAAGAAUAUUGAUUUCAAGGCUUUUAAGCUGAUUUUGAUAUAUAAUUUUUUAAUUAUAUAUCAAAAUUUGACAUAUACCAGAAAAUUAUAUAUAAUCGUCUUGUAUAUAAAAAUUAUAUAUAUAAAAUGAUUAUACAAAUAGGCCUAAAAUUUGUAAAAGAUAAGAAGAGCUGGAAUGUGAUAGAUUCCGGUCGUCAUUUUAAAUUGUAUCUAAGGAGUAAGAAACC (((((..(((((((((((.....((.(((.(((((.(((((......))))).))))).))).)).((.....)).(((...((((.(((((.(.(.((....)).).).))))))))).((....)).)))...))))))).))))..))))).......(((........))).((((((.(.......((((......(((((((((.((.((((((.((((((((.....(((((....))))).....)))).....)))))))))).)).)))))..)))).....)))).(((((...((.....))..)))))...........).)))))).............((((((.....((((((((((((.((((((((((........(((.......))).((((((....((.(((((((((((((((((....))))))))))))))))).).)..................(((((((((.(((((((((.......))))))))).))))))))).....))))))....)))))))))).(((((.((((((((((.......))))))))..)).)))))..)))).)))))))).))))))... (-145.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 853 60 11 151 102 NC_009009:SSA_1372|5end_hypothetical_protein_1389137..1389367_NEGATIVE 374 466 421 120 82 NC_009009:SSA_1982|5end_Transcriptional_regulator,_LytR/AlgR_family,_putative_1975873..1976103_NEGATIVE 358 570 525 69 22 NC_009009:SSA_1189|5end_GTP-binding_protein,_putative_1217657..1217887_NEGATIVE 312 513 478 68 30 NC_009009:SSA_1084|5end_Conserved_uncharacterized_protein_1101675..1101905_POSITIVE 309 512 480 45 3 NC_009009:SSA_0462|5end_ABC-type_multidrug_transport_system_(phospholipid,_LPS,_lipid_A_and_drug_exporter),_ATPase_and_permease_components,_putative_464815..465045_POSITIVE 308 447 403 191 147 NC_009009:SSA_0298|5end_Malate_permease,_putative_291336..291566_POSITIVE 306 448 403 164 127 NC_009009:SSA_2315|5end_Conserved_uncharacterized_protein_2316945..2317175_NEGATIVE 302 589 543 224 175 NC_009009:SSA_1760|5end_hypothetical_protein_1747284..1747514_NEGATIVE 300 459 412 110 57 NC_009009:SSA_1442|5end_Imidazole_glycerol-phosphate_synthase_subunit_hisF,_putative_1445941..1446171_NEGATIVE 300 503 461 141 91 NC_009009:SSA_0678|5end_Transcriptional_regulator,_ArgR_family,_putative_660274..660504_POSITIVE 299 548 501 194 152 NC_009009:SSA_0217|5end_Two-component_system_transcriptional_regulator_(CheY_domain_and_HTH-like_DNA-binding_domain),_putative_213183..213413_POSITIVE 297 515 473 181 136 NC_009009:SSA_2041|5end_Leucine-rich_protein,_putative_2046682..2046912_NEGATIVE 294 501 472 211 178 NC_009009:SSA_1445|5end_Imidazole_glycerol-phosphate_dehydratase,_putative_1447886..1448116_NEGATIVE 294 515 476 97 46 NC_009009:SSA_0089|5end_V-type_sodium_ATPase,_subunit_F,_putative_89930..90160_POSITIVE 292 520 475 228 180 NC_009009:SSA_0116|5end_30S_ribosomal_protein_S17,_putative_112632..112862_POSITIVE 291 571 532 46 2 NC_009009:SSA_0083|5end_hypothetical_protein_85437..85667_POSITIVE 289 589 541 191 131 NC_009009:SSA_0486|5end_Uroporphyrinogen-III_synthase,_putative_486637..486867_POSITIVE 288 513 480 70 30 NC_009009:SSA_0584|5end_hypothetical_protein_575806..576036_POSITIVE 287 518 473 140 93 NC_009009:SSA_1944|5end_Oligopeptide_transport_ATP-binding_protein,_putative_1936611..1936841_NEGATIVE 286 459 411 162 89 NC_009009:SSA_0317|5end_Ribosomal_protein_alanine_acetyl_transferase,_putative_311259..311489_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 315 509 474 67 22 NC_009009:SSA_0057|3end_Phosphotransferase_system_sugar-specific_EII_component,_putative_61246..61396_POSITIVE 314 596 561 98 65 NC_009009:SSA_1028|3end_Transcriptional_repressor,_XRE_family,_putative_1045290..1045440_NEGATIVE 312 513 478 65 27 NC_009009:SSA_1083|3end_Conserved_uncharacterized_protein_1101752..1101902_POSITIVE 309 512 480 55 13 NC_009009:SSA_0461|3end_ABC-type_multidrug_transport_system,_ATPase_and_permease_components,_putative_464905..465055_POSITIVE 304 599 554 103 56 NC_009009:SSA_0311|3end_hypothetical_protein_306703..306853_POSITIVE 302 589 543 71 22 NC_009009:SSA_1761|3end_Hemolysin_(containing_CBS_domains),_putative_1747437..1747587_NEGATIVE 301 440 394 80 28 NC_009009:SSA_0182|3end_Endoglucanase,_putative_187407..187557_POSITIVE 300 459 412 107 54 NC_009009:SSA_1443|3end_1-(5-phosphoribosyl)-5-[(5-_phosphoribosylamino)methylideneamino]_imidazole-4-carboxamide_isomerase,_putative_1445944..1446094_NEGATIVE 300 503 461 148 98 NC_009009:SSA_0677|3end_rRNA_methylase,_putative_660361..660511_POSITIVE 298 589 543 78 21 NC_009009:SSA_0921|3end_Zn-dependeant_threonine_dehydrogenase,_putative_932164..932314_POSITIVE 294 515 476 110 59 NC_009009:SSA_0088|3end_V-type_sodium_ATPase,_subunit_C,_putative_90023..90173_POSITIVE 287 518 473 129 82 NC_009009:SSA_1945|3end_Oligopeptide_transport_ATP-binding_protein,_putative_1936622..1936772_NEGATIVE 280 588 542 133 86 NC_009009:SSA_0685|3end_hypothetical_protein_669432..669582_POSITIVE 279 506 463 128 82 NC_009009:SSA_2146|3end_Metallo-beta-lactamase,_putative_2146732..2146882_NEGATIVE 278 433 395 58 13 NC_009009:SSA_0009|3end_Ribosome-associated_heat_shock_protein_(S4),_putative_9511..9661_POSITIVE 276 507 474 86 51 NC_009009:SSA_2239|3end_Conserved_uncharacterized_cytosolic_protein_2236922..2237072_NEGATIVE 276 92 54 113 73 NC_009009:SSA_0940|3end_NOL1/NOP2/sun_family_protein,_putative_949010..949160_POSITIVE 272 588 543 80 34 NC_009009:SSA_1252|3end_hypothetical_protein_1276771..1276921_NEGATIVE 271 465 423 138 95 NC_009009:SSA_0247|3end_hypothetical_protein_241455..241605_POSITIVE 270 446 401 46 6 NC_009009:SSA_1266|3end_crcB-like_protein_1,_putative_1290650..1290800_NEGATIVE